| Path |
Digest |
Size |
| probe_design/__init__.py |
sha256=pn6bviZ9rOb-_5LLM8r5k0CPhpCyM4GuKGe3pXIkY4Q
|
1439 |
| probe_design/data/exclude/excl_roi_1.bed |
sha256=p3KKA539AdiXg_L84Z2VUOmfR4mj7VAz9Ee3Cii1Lnk
|
82 |
| probe_design/data/exclude/excl_roi_10.bed |
sha256=D-qbTkmk6fkH-pqfBYJBcuVFIN3AxcWL4PCKfJjII3I
|
97 |
| probe_design/data/exclude/excl_roi_11.bed |
sha256=GGywzIdwgKbcdTRrjw5QSFPaoBGFhoNpIqLc9v3SoLY
|
96 |
| probe_design/data/exclude/excl_roi_12.bed |
sha256=G9AImMfiUYiMqP3TRPLvB8OrvRimJny4itmEWA6tSAU
|
99 |
| probe_design/data/exclude/excl_roi_2.bed |
sha256=vh6dArgtyWpRqcFiQZdY0O5Eu4eOMkSe5GYw0n509xw
|
96 |
| probe_design/data/exclude/excl_roi_3.bed |
sha256=VrA8pP6gC9y6fWBKK7V7QqwR0qxPR6araWacDfPKyXQ
|
98 |
| probe_design/data/exclude/excl_roi_4.bed |
sha256=bXaR78aEP-eR3sUl51OTCK7iDRng0Z2GKmNAs6XcwoM
|
96 |
| probe_design/data/exclude/excl_roi_5.bed |
sha256=5Gm1IABHFGFgJxmvdYD5Kv6Ikc_QEVMReWI0hotNVTo
|
96 |
| probe_design/data/exclude/excl_roi_6.bed |
sha256=DGXCqaP2narH_ax-70dZIiSHmUR2YAg4MS4GgoAIKI8
|
98 |
| probe_design/data/exclude/excl_roi_7.bed |
sha256=MtFHVSbZjV70R7AvuRT63_5cA54dNYwQe91TMv8uAPE
|
97 |
| probe_design/data/exclude/excl_roi_8.bed |
sha256=vRIaS37TEVCVreRTAIYJELSrY3IJOiLkGKHzXtdkQYk
|
97 |
| probe_design/data/exclude/excl_roi_9.bed |
sha256=N1Ce_J03RmpQF9xn8B9MRoO0msdjLcjzWxk3jDM5uoQ
|
96 |
| probe_design/data/rois/DNA_FISH_template.ods |
sha256=Zyt09Skzb6MY53Ri9fwL1R8r_2JqIdkB5afXtoHq_ek
|
21733 |
| probe_design/data/rois/DNA_RNA_FISH_template.ods |
sha256=i9U9tnlqRmnXqizzbSF4Iex0ni7OCbxrukEBUNRZxg0
|
17661 |
| probe_design/data/rois/RNA_FISH_template.ods |
sha256=JMapZSY5Owb2AzZNCseXxMX1jT6NEcWU2CG4uyWvtEI
|
30029 |
| probe_design/data/rois/all_regions.tsv |
sha256=G8Ef87RYaOFtksopsQnnOnDbxGnCH-JUEftROKNzNfo
|
515 |
| probe_design/data/rois/df_DNA_FISH.txt |
sha256=nt-184Vy7hj8OBCGT2UJRtJgbSST_sYyGpRo_ULh9-I
|
62 |
| probe_design/data/rois/df_DNA_RNA_FISH.txt |
sha256=KJ3pp6DEfZeaEhDMZCNyJTb-lkr0eQ_7wPXtKgy3m9g
|
154 |
| probe_design/data/rois/df_RNA_FISH.txt |
sha256=S4GsoVIUNtacED43cgfJANVyZQ1sKgMCoh60xZgSm6o
|
247 |
| probe_design/main.py |
sha256=wzhUiYmWgv_lFELUmXlvwJUzf2whpBYUEncR0hd41lA
|
3196 |
| probe_design/notebooks/plot_oligos.ipynb |
sha256=FkVkB2858dRnt_VcNTcLH3kQwq-BosUnVvtrFufpJpk
|
5076 |
| probe_design/notebooks/plot_probe_candidates.ipynb |
sha256=EgKt6uPJYMBTGg84KuLQMMFCaJlKlxh0tCgk7XfuVXU
|
15318 |
| probe_design/notebooks/plot_probes.ipynb |
sha256=9-duqGCIX7YTevDLHwl_-PvPaxglJ4esq6rN98-etx0
|
5086 |
| probe_design/shell/apply_blacklist.sh |
sha256=usWVUK-_LyRv8_nVEK4KByb6Adu1zW4vukq9LPWDG4o
|
1619 |
| probe_design/shell/build-db.sh |
sha256=pUmjy8_SK08UYkmrZRExhgNyyqKWwihfU9xPSUjQY_M
|
1983 |
| probe_design/shell/build-db_BL.sh |
sha256=mViCKDcWk8Ex0x3Ay3fpE8yjHYfZUlS_RDK-iA6byWY
|
3628 |
| probe_design/shell/build-db_cc.sh |
sha256=Et6ZUDMzCfZPx9qszyTKnjLFTCudbuGUFhtoI7pbEQY
|
1612 |
| probe_design/shell/generate_blacklist.sh |
sha256=OD2Sk9faT_Hr5FtefRoXPMFaAuz-DZ5M31zuR5cpMCw
|
1201 |
| probe_design/shell/genome_upper.sh |
sha256=GKUBVNVI0VFTHfSUK0rdMK79ZvsPdo6P-itO4mVdwqM
|
212 |
| probe_design/shell/get_T2T.sh |
sha256=lF5nrv9uxVNNxqo47-UkfF42ugOo9feog7MjcOQK-Iw
|
472 |
| probe_design/shell/get_ref_genome.sh |
sha256=5ZkPuiM1ke6TNM7YT3QTfx14KEUA30HPVKYVKD5eDw8
|
857 |
| probe_design/shell/makedirs.sh |
sha256=u5NL55ksHOThvbNUc-LfOPgJJhpTYnuI138MN5AtlUs
|
79 |
| probe_design/shell/melt_secs_parallel.sh |
sha256=BvDNKqWWunuYlPHW9RmH3ZdlLN2K052EOqjnt2ajR6A
|
720 |
| probe_design/shell/pipeline.sh |
sha256=eapLtNXC-M32OIEtXV97edCujo8EGhF0GpI7O8LZlrQ
|
2192 |
| probe_design/shell/pipeline_exclude.sh |
sha256=4VyASUuzba1Ln04Wz_j15koS8p_sjmKOXAJ9ChK6g6w
|
2526 |
| probe_design/shell/probe-query.sh |
sha256=AzOmHj_sWjMnO4UsdI5S6HqnhcXxY0YYmSo-eZtZIbw
|
2832 |
| probe_design/shell/ref2upper.sh |
sha256=DU5DaRa1Yms6usv8LxBjazVVZHXoRIy7V115kN0HC5o
|
521 |
| probe_design/shell/run_nHUSH.sh |
sha256=gjT3zhL-retMufknikLPu2OiYe0fIu3-K0C6hZaVaqc
|
4585 |
| probe_design/shell/run_nHUSH_excl.sh |
sha256=s81EDnSDWcVbu2_5h_5XeMmpmbHHAi_EoT5a5hpM-bw
|
5291 |
| probe_design/shell/show.sh |
sha256=cACtOI6zy1c-NX25P7NIgBcT-j6FLtQe2NqYyiw0snw
|
338 |
| probe_design/shell/test_shell.sh |
sha256=3edhL-APFSLPyclYhJtns6xdjwJnFAyXCB_zWrh_zIQ
|
22 |
| probe_design/shell/unfinished_HUSH.sh |
sha256=c6Q5LCx0RfM46yMR9eNl3MlunoN3lMCTj83iRXV-fO8
|
735 |
| probe_design/shell/validation_oldHUSH_BLAST.sh |
sha256=9etwZwGUFQEaHt6x3cq1LNly6snm9VHKGnjQBmtHLLc
|
3603 |
| probe_design/src/HUSH_feedback.py |
sha256=wtYXFNoWdppi_C5PJhOh2ovYnTfl-EiLZh2bynxAL1U
|
3560 |
| probe_design/src/__init__.py |
sha256=-LttiFQ7bIshq8drD_u8vjpmz_LL5Nwk9Jg_g3aWOiA
|
1877 |
| probe_design/src/cycling_query.py |
sha256=R1tlmIy5ZCLfKK127ObQNpKpZsm6roFVBUNJE6ZVpR0
|
23367 |
| probe_design/src/cycling_query_new.py |
sha256=mTf-40Hb4oVexe1xcLK86yjfkbKXpv12OVtEaoHGiOg
|
24135 |
| probe_design/src/download_chromosomes.py |
sha256=FelLk386L939mcOv1d-9NDcMLkoFG_PX_GkAG2Sic3U
|
8046 |
| probe_design/src/ensemble.py |
sha256=0erD0KYmh24Qp0BmLMOBjsdVIMHx9I3dUQ2iBGzy77o
|
319 |
| probe_design/src/escafish_score.py |
sha256=Lt1hO0tXsTaIfkRt5JEg1-4EeVuMwJO4rEZ1kPEkEl8
|
8497 |
| probe_design/src/escafish_score_new.py |
sha256=D23SzT8x5VP1KDze6gL77IVhGEPM-2aUrcARUXIVTlA
|
9275 |
| probe_design/src/exclude_region.py |
sha256=7tXj1K5CjpgZicLsZ186xif7A4D3uoUvGo8dSSUcMGw
|
3163 |
| probe_design/src/generate_exclude.py |
sha256=5ac6rptcanW9YMPcJplH2PcyonrZc5-dHNIhcgIkXAE
|
1446 |
| probe_design/src/get_GRC.py |
sha256=3JQWbjznXEmHtkPejkIKS_-zYMEpdxNBgsWVLtR117g
|
10965 |
| probe_design/src/get_oligos.py |
sha256=J47YS2aEuVKNdtZGy6s8nLdHIutjMm_6XRraxhC8T4E
|
4314 |
| probe_design/src/prepare_input.r |
sha256=qI3zVs-HqIWgNXbFfcHHDuZVcFvWGAznYiPSzKpIAHo
|
3331 |
| probe_design/src/reform_hush.py |
sha256=gudV-atHDRMQA8N3_CsCbUaxbwZ-HM_8aAAVOSmZdSQ
|
4177 |
| probe_design/src/reform_hush_combined.py |
sha256=UJWgvCYRmDTE3EHif5Q2dZ2xV75O1FkxWbU0ERKsKPc
|
5134 |
| probe_design/src/reform_hush_combined_new.py |
sha256=L7yTANGCPocDvqjUhZ4q4J9Gb-z648-6kS5yYVtNwG4
|
5598 |
| probe_design/src/reform_hush_consec.py |
sha256=SyHxN7oxSWNiKxxflFhim7mPuE7b1t2AEDcKDXyHeEA
|
6620 |
| probe_design/src/select_probe.py |
sha256=IKYTdvcI1BnAuOi_k7mlCe9jcBXtMmrxCVhpSZa-aSI
|
5167 |
| probe_design/src/split_GRC.py |
sha256=WnkbuuZW4r0C4FjS1bRHbU3O0i15pZAABDGUllW11xU
|
2328 |
| probe_design/src/split_T2T.py |
sha256=46S_q8QLGN_sCUWmIzcRP3xgfMAS9WUlnmO_uF4JgMo
|
2407 |
| probe_design/src/split_T2T_old.py |
sha256=aPqhNSXFmFdUwKLoGwkYBk58MF6gIjLImJQbWJAUOEY
|
1699 |
| probe_design/src/split_fasta.py |
sha256=3XiFzTP9Miyafg3ZnsUNEqNoBdU4qgCRdY6ciIlIoZc
|
785 |
| probe_design/src/summarize_probes.py |
sha256=QSSt4HnqoIRWDPCMKNoAVl4B4vEi3DBcd1bt2Zf-0tU
|
3546 |
| probe_design/src/summarize_probes_cumul.py |
sha256=ysaqyIN7zZ4iP-94hwzFPm2qAtnjBkNukpC912FH0vQ
|
4050 |
| probe_design/src/summarize_probes_final.py |
sha256=r7mMBTVBcgFxEMNg5QS4y7KK0G8wXVozfgu90QFbT3k
|
4081 |
| probe_design/src/test.py |
sha256=jCDvt1YGNmynqSoFnJ2zLBs49vLdRclIXKknNYuQ2MU
|
796 |
| probe_design/src/visual_report.py |
sha256=r7eCIiH1ZKsSa7o3-XWVU_yQjPh6fAAE2JCCKSDkPuo
|
7354 |
| probe_design-0.2.45.dist-info/LICENSE |
sha256=LFxvmzEUeFuFAI8YJyJY29-93W7ftLh3gt8X2VstYkk
|
1027 |
| probe_design-0.2.45.dist-info/METADATA |
sha256=YDZ7G9WQwsAS0uv_fTBF3ZXa6CP5763I523JB1nJqQM
|
13804 |
| probe_design-0.2.45.dist-info/WHEEL |
sha256=FMvqSimYX_P7y0a7UY-_Mc83r5zkBZsCYPm7Lr0Bsq4
|
88 |
| probe_design-0.2.45.dist-info/entry_points.txt |
sha256=WCt5Ev0aVjX7qb7-gsUtHeR4JUUCvt_Lomd6-vgi0rE
|
46 |
| probe_design-0.2.45.dist-info/RECORD |
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