popari

View on PyPIReverse Dependencies (1)

0.0.72 popari-0.0.72-py3-none-any.whl

Wheel Details

Project: popari
Version: 0.0.72
Filename: popari-0.0.72-py3-none-any.whl
Download: [link]
Size: 2167080
MD5: 0f9d77eedc1736de78fbdb483511468c
SHA256: c10b691b1cf15cb35e78f10fd07016c1491621f0abd11a00687e42d90141db36
Uploaded: 2024-01-27 05:56:41 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: popari
Version: 0.0.72
Summary: Popari: a probabilistic graphical model for integrated spatial transcriptomics analysis
Author-Email: Shahul Alam <alam.shahul[at]gmail.com>
Project-Url: Homepage, https://github.com/alam-shahul/popari
Project-Url: Bug Tracker, https://github.com/alam-shahul/popari/issues
License: MIT License Copyright (c) 2020 Ma Lab at CMU Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.8
Requires-Dist: anndata (>=0.9.1)
Requires-Dist: louvain (>=0.8.0)
Requires-Dist: matplotlib (>=3.7.0)
Requires-Dist: numpy (>=1.20.1)
Requires-Dist: ortools (>=9.7.2996)
Requires-Dist: pandas (>=1.5.2)
Requires-Dist: scanpy (>=1.9.2)
Requires-Dist: scikit-learn (>=0.24.1)
Requires-Dist: scipy (>=1.7.1)
Requires-Dist: seaborn (>=0.11.1)
Requires-Dist: squidpy (>=1.2.3)
Requires-Dist: torch (>=1.13.0)
Requires-Dist: tqdm (>=4.60.0)
Requires-Dist: umap-learn (>=0.5.1)
Requires-Dist: multiprocess (>=0.70.15); extra == "benchmark"
Requires-Dist: mlflow (>=2.5.0); extra == "mlflow"
Requires-Dist: toml (>=0.10.2); extra == "mlflow"
Requires-Dist: ipycanvas; extra == "simulation"
Requires-Dist: jupyterlab; extra == "simulation"
Provides-Extra: benchmark
Provides-Extra: mlflow
Provides-Extra: simulation
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 1445 characters]

WHEEL

Wheel-Version: 1.0
Generator: hatchling 1.12.2
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
popari/__about__.py sha256=UbKC7Q5vTxT0r5MM5XuEpPlbQ1sSUoEp2hTvvO4lTw0 24
popari/__init__.py sha256=_2R7QwgORK18FntGhGImgzYQaG0mboJ5MpQql-aokDE 7033
popari/_canvas.py sha256=shQeZaPa4GNlenW3o2RvVPTBc_T7rZ5no9gyZzDiKkw 8684
popari/_dataset_utils.py sha256=ueVGiE_pOHsGw1jnMbM1JJRr0KmT3UA6IwzwQraDZkA 70042
popari/_embedding_optimizer.py sha256=iM2NVK62W65akOXhkWTEMsBdfyM0VlNH6Pzr9a4YWNs 21018
popari/_hierarchical_view.py sha256=zEkam1m4qDr6z2juo6dtAdEKLsubOVBJRO2adOnq75c 31612
popari/_parameter_optimizer.py sha256=I_9-WEhWBQiOZAADUtxhhaxgbOnSh9yUfm9F4oePzu8 48412
popari/_popari_dataset.py sha256=hzo2DDOIv8hoB7DvkGRARmykomvF4W36KQZ2TQ4TazQ 3584
popari/_simulation_utils.py sha256=rbuyhmtMUALvkYfaCVnyW0rPYAg6jxDrwYCd0a78HYM 4277
popari/analysis.py sha256=T-63J6rd2lqQyi5ICVENIiEn8LUwXibSLT6NI9nFt2s 18268
popari/components.py sha256=yOFpmFDl0WnGOdAk0d87-kjPNsL2OsD1M_2TwXm_OGc 223
popari/genes_ncbi_mus_musculus_proteincoding.py sha256=ZjK0hC23vX5JuJFwAgd8-z75q_X9dQmEpHeynplzSdk 14469105
popari/initialization.py sha256=jerTGKp2FCsOP4TYXfjaf--YcKk38V5Eq2VmJAWfHh0 8165
popari/io.py sha256=n3pMkzirj8KHesxuaU06W6he3KjpzjWqKYqPwdcTf2o 10611
popari/main.py sha256=eeYOWNoPUlpuiIoXvLvOZmXp3Nkv2A8sxZ-qZk6buHc 5074
popari/model.py sha256=-2Ro2gZOgvmPmFTQFQqH1DE8qLZRXR5QJeW5HpaC3es 27699
popari/plotting.py sha256=dzQyjkeBX2qxqEl8K2QQm4xdxab1pUmdZCei1_5c9VQ 15186
popari/sample_for_integral.py sha256=HGihxFbUvVpACgWGlKONpoAdB-S2wJAW19NvY2_LXB0 2822
popari/simulation_framework.py sha256=Llc_VclmN_f-4-fR0RDuA557VyeNV7KF8lq-nHnGAzM 25686
popari/util.py sha256=Mw7dlJj2tkmxgBsktTB-ux6sjj-tAyRbNj7czOEMmLY 33941
popari/mlflow/grid_search.py sha256=E_Z_aqb4u7sUO98iq6_w0D2mJmyyec4GVZHjlCDaMMo 9716
popari/mlflow/train.py sha256=m_VE9YuxCqiAQR81Wdj_0NrWC20rMwjWOfJb3W6Q5ew 12573
popari/mlflow/util.py sha256=W_gaDJ6uLlDZ2ThSaNLcR0hRLwvU5QrfoBMwY-AQ6kw 5843
popari-0.0.72.dist-info/METADATA sha256=zBZdIKuzKyQ16HamUHJpFdotlOU7eK2vDeaPnm0_ZwE 4001
popari-0.0.72.dist-info/WHEEL sha256=hKi7AIIx6qfnsRbr087vpeJnrVUuDokDHZacPPMW7-Y 87
popari-0.0.72.dist-info/entry_points.txt sha256=jhU68kZlGqARaOY6cBJ-BgcJ7lYqcnVkZn2bEp0k_Sg 131
popari-0.0.72.dist-info/licenses/LICENSE sha256=0Ea2tt9VZ-PhjACdDhVPjvJBp-0tm2P_ajCuYAVcv1Q 1070
popari-0.0.72.dist-info/RECORD

entry_points.txt

popari = popari:main
popari-grid-search = popari.mlflow.grid_search:run
popari-mlflow = popari.mlflow.train:main