Path |
Digest |
Size |
plants_sm/__init__.py |
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129 |
plants_sm/setup_logger.py |
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357 |
plants_sm/alignments/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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0 |
plants_sm/alignments/alignment.py |
sha256=TWefwN36G2QqpomvBO35BbtV7AylV03foD73GXO_qLI
|
2902 |
plants_sm/data_standardization/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
plants_sm/data_standardization/padding_enumerators.py |
sha256=5-AbXmty1mn8aG9ri9NbcPGf3oPj88ZNMtJHwE3yh_4
|
165 |
plants_sm/data_standardization/truncation.py |
sha256=ioa7ReybexjogJwtIqcdGHap8g_uTVLiQ_t7LIlDja0
|
2028 |
plants_sm/data_standardization/x_padder.py |
sha256=kUKEfXYFJ1W07T9KfHrGtYNYcePmg-CcdVE_DjD43oI
|
1210 |
plants_sm/data_standardization/compounds/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
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plants_sm/data_standardization/compounds/_presets.py |
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192 |
plants_sm/data_standardization/compounds/deepmol_standardizers.py |
sha256=yrHks0z4uL3e6gQNNe-nnuvbcKvCQj-Pr-O9EM92VC4
|
2565 |
plants_sm/data_standardization/compounds/padding.py |
sha256=d8hKxF-0JRhLXETycc6s9xEXW3BNLXWMPhXelHd0dZQ
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4433 |
plants_sm/data_standardization/proteins/__init__.py |
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plants_sm/data_standardization/proteins/padding.py |
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plants_sm/data_standardization/proteins/standardization.py |
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plants_sm/data_structures/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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plants_sm/data_structures/dataset/__init__.py |
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plants_sm/data_structures/dataset/_utils.py |
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plants_sm/data_structures/dataset/dataset.py |
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10519 |
plants_sm/data_structures/dataset/multi_input_dataset.py |
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15098 |
plants_sm/data_structures/dataset/single_input_dataset.py |
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plants_sm/data_structures/dataset/batch_manager/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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plants_sm/data_structures/dataset/batch_manager/batch_manager.py |
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7285 |
plants_sm/design_patterns/__init__.py |
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plants_sm/design_patterns/observer.py |
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plants_sm/estimation/__init__.py |
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plants_sm/estimation/_utils.py |
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plants_sm/estimation/estimator.py |
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plants_sm/featurization/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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plants_sm/featurization/_utils.py |
sha256=TZ9d6lBVrXv1Jt9l7ANRywkuP2OHPnzpaIOSeo68pB4
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plants_sm/featurization/featurizer.py |
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plants_sm/featurization/compounds/__init__.py |
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plants_sm/featurization/compounds/_presets.py |
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plants_sm/featurization/compounds/deepmol_descriptors.py |
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2293 |
plants_sm/featurization/compounds/map4_fingerprint.py |
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plants_sm/featurization/encoding/__init__.py |
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plants_sm/featurization/encoding/encoder.py |
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6683 |
plants_sm/featurization/encoding/label_encoder.py |
sha256=RolpTSgAetCUnUgerSO_-TPT9NBhBrwakEstP5ok7qI
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plants_sm/featurization/encoding/one_hot_encoder.py |
sha256=1nI57PR7S4IZ8NAmhnj5USHtXmGCNqIIoumQmuo2I50
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plants_sm/featurization/proteins/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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plants_sm/featurization/proteins/bio_embeddings/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
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plants_sm/featurization/proteins/bio_embeddings/_utils.py |
sha256=5IpxMASn_PNJtbLCCBCXOwB8t5IZQZLoct_ewEEersM
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4314 |
plants_sm/featurization/proteins/bio_embeddings/constants.py |
sha256=tbxNLZNivchKODkkP2_BAImUbomL4v_IbZfUUDl54vA
|
2875 |
plants_sm/featurization/proteins/bio_embeddings/esm.py |
sha256=7WOaHB3eO_AQg6lQjGHyonEImPXikD8cSPrpdw5p_-M
|
10672 |
plants_sm/featurization/proteins/bio_embeddings/esm_models.py |
sha256=xjo-7xvNPT4uKTElBKNj_L4ueIpzio-QaTlaxxpmVS0
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10129 |
plants_sm/featurization/proteins/bio_embeddings/prot_bert.py |
sha256=wMDwMuwtFdefkf7J7jG8aLR4i1dra6Ke_O6xtvZV7B8
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2795 |
plants_sm/featurization/proteins/bio_embeddings/unirep.py |
sha256=VQrHmrLO_gUbLWGQ4Sh33RlYhNxisNBoE8sjLJGs1No
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3794 |
plants_sm/featurization/proteins/bio_embeddings/word2vec.py |
sha256=NrGJAhoUXrg0EjmPqXia5q1pdTZ02xPMpLxXm5eZ4gI
|
4392 |
plants_sm/featurization/proteins/encodings/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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0 |
plants_sm/featurization/proteins/encodings/_constants.py |
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8493 |
plants_sm/featurization/proteins/encodings/blosum.py |
sha256=GSBxbdp86OeBmsECzKmza-XMp17Btb1X5zSGXJDoCMc
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2670 |
plants_sm/featurization/proteins/encodings/nlf.py |
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2240 |
plants_sm/featurization/proteins/encodings/z_scale.py |
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1575 |
plants_sm/featurization/proteins/propythia/__init__.py |
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plants_sm/featurization/proteins/propythia/propythia.py |
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plants_sm/featurization/proteins/propythia/propythia_descriptors/__init__.py |
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plants_sm/featurization/proteins/propythia/propythia_descriptors/_constants.py |
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plants_sm/featurization/proteins/propythia/propythia_descriptors/_utils.py |
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2915 |
plants_sm/featurization/proteins/propythia/propythia_descriptors/amino_acid_composition.py |
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2742 |
plants_sm/featurization/proteins/propythia/propythia_descriptors/composition_transition_distribution.py |
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4061 |
plants_sm/featurization/proteins/propythia/propythia_descriptors/correlation.py |
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8216 |
plants_sm/featurization/proteins/propythia/propythia_descriptors/presets.py |
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plants_sm/featurization/proteins/propythia/propythia_descriptors/pseudo_amino_acid_composition.py |
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5764 |
plants_sm/featurization/proteins/propythia/propythia_descriptors/psycho_chemical.py |
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16446 |
plants_sm/featurization/proteins/propythia/propythia_descriptors/sequence_order.py |
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6541 |
plants_sm/hyperparameter_optimization/__init__.py |
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plants_sm/hyperparameter_optimization/experiment.py |
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plants_sm/hyperparameter_optimization/nni_searcher.py |
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plants_sm/hyperparameter_optimization/trial.py |
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plants_sm/io/__init__.py |
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plants_sm/io/commons.py |
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plants_sm/io/csv.py |
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plants_sm/io/excel.py |
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plants_sm/io/h5.py |
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plants_sm/io/json.py |
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plants_sm/io/pickle.py |
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plants_sm/io/reader.py |
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plants_sm/io/writer.py |
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plants_sm/io/yaml.py |
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plants_sm/mixins/__init__.py |
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plants_sm/mixins/mixins.py |
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plants_sm/models/__init__.py |
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plants_sm/models/_esm.py |
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plants_sm/models/_utils.py |
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plants_sm/models/constants.py |
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plants_sm/models/enumerators.py |
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plants_sm/models/lightning_model.py |
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plants_sm/models/model.py |
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plants_sm/models/pytorch_model.py |
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plants_sm/models/tensorflow_model.py |
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plants_sm/models/cnn/__init__.py |
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plants_sm/models/cnn/cnn.py |
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plants_sm/models/ec_number_prediction/__init__.py |
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plants_sm/models/ec_number_prediction/_clean_distance_maps.py |
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plants_sm/models/ec_number_prediction/_esm_model_architectures.py |
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plants_sm/models/ec_number_prediction/clean.py |
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plants_sm/models/ec_number_prediction/d_space.py |
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plants_sm/models/ec_number_prediction/deepec.py |
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plants_sm/models/ec_number_prediction/esm.py |
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plants_sm/models/ec_number_prediction/hdmlf.py |
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plants_sm/models/fc/__init__.py |
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plants_sm/models/fc/fc.py |
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plants_sm/models/interaction/__init__.py |
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plants_sm/models/interaction/baseline_model.py |
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plants_sm/models/interaction/deep_conv_dti.py |
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plants_sm/models/interaction/deep_dta.py |
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plants_sm/parallelisation/__init__.py |
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plants_sm/parallelisation/torch_spawner.py |
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plants_sm/pipeline/__init__.py |
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plants_sm/pipeline/pipeline.py |
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plants_sm/reports/__init__.py |
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plants_sm/tokenisation/__init__.py |
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plants_sm/tokenisation/compounds/__init__.py |
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plants_sm/tokenisation/compounds/smilespe.py |
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plants_sm/transformation/__init__.py |
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plants_sm/transformation/_utils.py |
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plants_sm/transformation/transformer.py |
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plants_sm/unsupervised/__init__.py |
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plants_sm/unsupervised/kmeans.py |
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plants_sm/unsupervised/model.py |
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plants_sm/unsupervised/pca.py |
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plants_sm/unsupervised/tsne.py |
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plants_sm/utilities/__init__.py |
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plants_sm/utilities/utils.py |
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plants_sm/validation/__init__.py |
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plants_sm-0.0.2.dist-info/LICENSE |
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1070 |
plants_sm-0.0.2.dist-info/METADATA |
sha256=ChAN4hkW4z3TiwbWCdaf2yZZbUG88OkRHD-HHwMxo6A
|
1622 |
plants_sm-0.0.2.dist-info/WHEEL |
sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM
|
92 |
plants_sm-0.0.2.dist-info/dependency_links.txt |
sha256=DyFVl4fx3cFVDvfR7By1K8zd0SSyxwVZB_LTN3xoZY0
|
108 |
plants_sm-0.0.2.dist-info/top_level.txt |
sha256=7jgPnlu3DygjsQILXP3QudCgKGJ8ji45ZGzBuyZOsUc
|
10 |
plants_sm-0.0.2.dist-info/RECORD |
— |
— |