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phylo-treetime

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0.11.4 phylo_treetime-0.11.4-py3-none-any.whl

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Project: phylo-treetime
Version: 0.11.4
Filename: phylo_treetime-0.11.4-py3-none-any.whl
Download: [link]
Size: 148448
MD5: 9364dbd4a936e660be8ace2cfb109546
SHA256: 8a4c62ed5887a2a9995b9300804471533390bbbabb5b43741be5c8f2a486f64d
Uploaded: 2024-08-19 12:36:53 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: phylo-treetime
Version: 0.11.4
Summary: Maximum-likelihood phylodynamic inference
Author: Pavel Sagulenko, Emma Hodcroft, and Richard Neher
Author-Email: richard.neher[at]unibas.ch
Home-Page: https://github.com/neherlab/treetime
License: MIT
Keywords: Time-stamped phylogenies,phylogeography,virus evolution
Classifier: Development Status :: 5 - Production/Stable
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Requires-Dist: biopython (!=1.77,!=1.78,>=1.67)
Requires-Dist: numpy (>=1.10.4)
Requires-Dist: pandas (>=0.17.1)
Requires-Dist: scipy (>=0.16.1)
Requires-Dist: matplotlib (>=2.0); python_version >= "3.6"
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 12505 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.42.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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treetime/__init__.py sha256=pcjhaF6xyAs14yyapFdUyKdh8HjDTSuC4Sj6K-uknZs 1951
treetime/__main__.py sha256=en4S-0N8wTLMtzdyDm5AzoLKoC5K_HdvY5QHxPvZS7w 649
treetime/aa_models.py sha256=ZOYdsr_uaLkwDsLdmt-UGkAqff6RCvp9rIzpTBKyXgc 4591
treetime/arg.py sha256=_elagsI3OEtwFVElAeowOVrgSzu9IM6sUTXIBUFM0qQ 5674
treetime/argument_parser.py sha256=eNmLNOQDwERpTfHVxgOk9xK2xJp-eJo82wac0IzxACM 22032
treetime/branch_len_interpolator.py sha256=8qfuWzT6j-M_9w54tLW7kzS3o9LhFXiUTfwoqCR3MzY 6196
treetime/clock_filter_methods.py sha256=4uCsFJjgiJTLvGAoHeFWuvbtku46rk0j0o602X_teJs 8824
treetime/clock_tree.py sha256=AbnhfaFaqSiPXLIcYDFQiloIsfkSjLRs74cxbX7QuMk 56422
treetime/config.py sha256=_AXAkyHeM-MEPzbiXUrBgM9Ihy28shik4ZMB3ToaURk 1035
treetime/distribution.py sha256=L9qskZrPcABvCY2hrt8O2uRdTsuHCe9tTGXAcSShkDM 16881
treetime/gtr.py sha256=M3GOsSzOSyqMXAORsbv5GwiewybKkx0lGTTUolfggyQ 39412
treetime/gtr_site_specific.py sha256=8S4s73i33y-wGkqDB61eF8oEyALPi5PHuKkg3yrALi0 16033
treetime/merger_models.py sha256=M_yq6ZlE8vHW2q-T8AmpCm9JUEP49oWSxbwBEl4d8FE 18545
treetime/node_interpolator.py sha256=0bKEcKPn5A0HXlAJnqljwJ8pFfEviRWz3G6gKofx0a0 15509
treetime/nuc_models.py sha256=pkkfJ9p3lBz83Ieq2SMEQTYDkKvk8y7eq3_Z4OspEA0 7263
treetime/seq_utils.py sha256=ui56arW9bkT0-wG57GtwZMlmG3F-E9BtNZtgoBO8LaA 14081
treetime/seqgen.py sha256=z4XwGGgrsTQsQUxtOD1iFkFUb04PZtcEKEiPLqSH0PI 3177
treetime/sequence_data.py sha256=PUr7vlBlID501unXFgHVan9HBCdmK9a7lI9rCsvh9lU 22576
treetime/treeanc.py sha256=CyN0O2yKW3efCoAsaerAik7Bye5ayi3xyeLQtqM7sv0 72897
treetime/treeregression.py sha256=Z8jnPG42JnXZV4kVKM19dX1X9D2tXGMbR0tBvgvI3Bg 22803
treetime/treetime.py sha256=sv9la71cvR-xyh3gRRwST4eWP2bVloKLWmKjb5E5Rqk 55252
treetime/utils.py sha256=C23JI4i_Zgat06CXcwcJWU9k5rliJ4XlcxQ-Txwuxio 18329
treetime/vcf_utils.py sha256=Q3watFnCTTirqPo3RgtS5Ahr8dLVwgO19FWd5z9A_fI 30847
treetime/wrappers.py sha256=asPM-Rr3QMEWpSbaM0_LF3G1X5nUDIWFsmK9wpxE-EM 41132
phylo_treetime-0.11.4.dist-info/LICENSE sha256=7AsWCYDyOKF1mkueZmEInvRA_vOJN_rNGZTIoPQJnaE 1100
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phylo_treetime-0.11.4.dist-info/WHEEL sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM 92
phylo_treetime-0.11.4.dist-info/entry_points.txt sha256=OVRJE_0fBtZSqeuoaNPkI7k4KOVHOq8J5kOO_o6VH3c 52
phylo_treetime-0.11.4.dist-info/top_level.txt sha256=rEVy09DwrIKuqD2-InfHkZIhLEbetwjQiJCFcXEHQm0 9
phylo_treetime-0.11.4.dist-info/RECORD — —

top_level.txt

treetime

entry_points.txt

[console_scripts]
treetime = treetime.__main__:main