Wheelodex » Projects » pbiotools

pbiotools

View on PyPI — Reverse Dependencies (1)

4.0.2 pbiotools-4.0.2-py3-none-any.whl

Wheel Details

Project: pbiotools
Version: 4.0.2
Filename: pbiotools-4.0.2-py3-none-any.whl
Download: [link]
Size: 155611
MD5: e851b52da02e4d8234f17c8cdf7aff60
SHA256: 22747cce96279c4c0623e3b093ba990a3a6a38db89b785112606374095a6e434
Uploaded: 2023-09-12 09:00:10 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: pbiotools
Version: 4.0.2
Summary: Miscellaneous bioinformatics and other supporting utilities for Python 3
Author: Brandon Malone
Maintainer-Email: Etienne Boileau <boileau[at]uni-heidelberg.de>
Project-Url: Github, https://github.com/dieterich-lab/pbiotools
Project-Url: Issues, https://github.com/dieterich-lab/pbiotools/issues
License: MIT
Keywords: bioinformatics,riboseq
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Requires-Python: <3.11,>=3.7
Requires-Dist: biopython
Requires-Dist: dask
Requires-Dist: fastparquet
Requires-Dist: joblib
Requires-Dist: matplotlib
Requires-Dist: matplotlib-venn
Requires-Dist: mygene
Requires-Dist: numpy
Requires-Dist: openpyxl
Requires-Dist: pandas
Requires-Dist: pip
Requires-Dist: pyensembl
Requires-Dist: pysam
Requires-Dist: pytest
Requires-Dist: seaborn
Requires-Dist: scikit-learn
Requires-Dist: scipy
Requires-Dist: tqdm
Requires-Dist: ipykernel; extra == "docs"
Requires-Dist: matplotlib; extra == "docs"
Requires-Dist: nbsphinx; extra == "docs"
Requires-Dist: pandoc; extra == "docs"
Requires-Dist: sphinx (>=4.5.0); extra == "docs"
Requires-Dist: sphinx-rtd-theme (>=1.0.0); extra == "docs"
Requires-Dist: pytest; extra == "tests"
Requires-Dist: pytest-cov; extra == "tests"
Provides-Extra: docs
Provides-Extra: tests
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 1558 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.41.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
pbiotools/__init__.py sha256=g2517TGzhxt71aRNOK72tEsfLbvKk5KaLECoFJt5PFs 76
pbiotools/misc/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
pbiotools/misc/dask_utils.py sha256=Md1Y3Z6s1mPo-N4UcGYVtC0ttVoWQpz0O0Yhitqn6xI 10652
pbiotools/misc/logging_utils.py sha256=rUt2Eas92FONJ0jQhIFyIeB3vP5iicvjaVjAWxAgC0E 6758
pbiotools/misc/math_utils.py sha256=n1zP42MF6SpVd7y3lz9cVPJ6A5C1jf4vQt08fU2mjUM 37493
pbiotools/misc/mpl_utils.py sha256=GV-CslHHish6Pvd1ML9dXwvpDlE1in13fXvXFKTwogA 26959
pbiotools/misc/pandas_utils.py sha256=F6JYqpOFo6hU_zztCgcT1bRLlBcRQPYB8rhFC7Lt62Q 15547
pbiotools/misc/parallel.py sha256=_DDgzTVvOwRpVV4-oxyqz0hbicGhERL0ZqPmf0jxkmU 11715
pbiotools/misc/shell_utils.py sha256=1H7sWCwj93QNyJAUTCNiTueIt1EFZcAvDil4ZCb0StU 13113
pbiotools/misc/slurm.py sha256=2aIqWjaxfHca0LBAV_IUKeW_-aGqLKpUsotLbq3b4AY 12324
pbiotools/misc/suppress_stdout_stderr.py sha256=npax2hUT01X9MK9ZbYj2ex4fLAUIZw45VOiEDKnWL5E 1378
pbiotools/misc/utils.py sha256=bnkD1qfRg3uJZY3mKFSZDtrcqAdLk-K1tG5lU_gjekg 40964
pbiotools/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
pbiotools/utils/bam_utils.py sha256=haDz6kTR-Kycwx_W4WVvJfjq9XnFvAUGzr82D-TEcFE 18815
pbiotools/utils/bed_utils.py sha256=w4epI3XEeoDr4mhmr4x1wPFf6RvMJnk4rumx5b1HzaI 100658
pbiotools/utils/bio.py sha256=3KKD5hOCTgrm10slUlTXAUTfrw8QUVfiRZy3F5F02vo 12127
pbiotools/utils/fastx_utils.py sha256=F7WtQ5OsNOTwHQa4eiQMM_-hm3c_9qPxvDyD5LSRWM8 18755
pbiotools/utils/gffread_utils.py sha256=aJaPywl8WBEp3GGE5vDS08IAmfdDVyxm6zu36qZVorQ 9471
pbiotools/utils/gtf_utils.py sha256=pArwNQGXalOsulx21YBvraOt0_ygRoXfayGxmcZ3nfw 12306
pbiotools/utils/meme_utils.py sha256=hnWh9H6YhsL-OzrM_APXxil5ololJfQNeF39U9yC1SM 11920
pbiotools/utils/metacyc_utils.py sha256=cl6zMykgpJ_lWhUAtmi0eZ4G0cUjnF5g4UzTc2s34aU 5664
pbiotools/utils/mygene_utils.py sha256=iNmii9rKr2CsnalfXjHNSQRaBV0oaqWDsnq6lrxVR7U 14647
pbiotools/utils/pgrm_utils.py sha256=YaqPkFB81s38zx2ToCp8JUPGmffcaLZuTJH-cCg2Vv8 10519
pbiotools/utils/pyensembl_utils.py sha256=rI165P_0qiUPGLVb7ocE7fLiX0yz3ED4DPvdQ1TCOcI 7457
pbiotools/utils/pgrms/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
pbiotools/utils/pgrms/add_mygene_info_to_orfs.py sha256=ulknMv-le3UokpsRy1JF17m9-WMSdj6O7thQUwlbxv0 4791
pbiotools/utils/pgrms/bam_to_wiggle.py sha256=NHn1HZgQ0-fbEG70MpSKCEciszX2dx4oANuRt0rzYJo 6489
pbiotools/utils/pgrms/bed12_to_gtf.py sha256=WNdWS7NYb4P0lmOU8DuT9tFwM0nbEVuxSWHLOanN0Qs 2656
pbiotools/utils/pgrms/bedx_to_bedy.py sha256=ZWGoYdUcTvWuyVaV3Jum7wr7BHf9oKxrhlFZBsqg6kg 2501
pbiotools/utils/pgrms/convert_ccds_to_bed.py sha256=oF6-g7zzgMjcMU940Tgz0Oe_wsBUYvQ1LJDmtmkpC7I 3288
pbiotools/utils/pgrms/count_aligned_reads.py sha256=v_boacTp_wkIcJSRvlFhPbf5O6xw3uGuEwlPZ487NdA 1765
pbiotools/utils/pgrms/count_reads.py sha256=KG_IMl_2D5-fUj62ILcEND6BRtzqe8HU7wb99vjXYQo 1372
pbiotools/utils/pgrms/create_mygene_report.py sha256=pEVlOkWt5iYdVt0YhS1k4Tefkhod7j93a8ctq6SdReo 3484
pbiotools/utils/pgrms/dna_to_aa.py sha256=7H7l9KoJ0bD4cDd_5HMaBxtQdTV_qH1qNsUiJiX81R8 1057
pbiotools/utils/pgrms/download_srr_files.py sha256=fLxMxMxOowjhgUBpHngFY3goaz8YJgpyIIaUoQpEPxc 9157
pbiotools/utils/pgrms/extract_bed_sequences.py sha256=zFy_7aosJWALlecxPbBaJk3rHSlpRRIU816Hta_uXtI 1689
pbiotools/utils/pgrms/extract_cds_coordinates.py sha256=wjsjU8F1RQJWb14raKymuHvsb_gOSBOfPuyefyI_Zow 1443
pbiotools/utils/pgrms/fasta_to_fastq.py sha256=WMilrqwzGlZvm6I2z4dFB4CKNOeq0LLzZj5eKOZotl0 2158
pbiotools/utils/pgrms/fastq_pe_dedupe.py sha256=Xc9wrOl-oUc5ok_KDPtxR3nQViO_-1JNP0jdiJpz78g 3702
pbiotools/utils/pgrms/filter_bam_by_ids.py sha256=aDI26fO9RsZMn61m4toFMOuwTbev50BMF-Y6toAiHYg 1450
pbiotools/utils/pgrms/fix_all_bed_files.py sha256=rfNcfk1LXouF7Z65S7DeC5vkS1cRqCxB1stYtNWG_84 1776
pbiotools/utils/pgrms/get_all_utrs.py sha256=29HSxZnVjOdU5dQX98_WCsIphwXYJhZR5hlwesn2kCA 963
pbiotools/utils/pgrms/get_read_length_distribution.py sha256=tdh-Bx1DLQYq6kgTCgQ4uQx100BCT_uoyQJEm4TE0WE 4312
pbiotools/utils/pgrms/gtf_to_bed12.py sha256=zMOvTgweqDrmZx4bUNuLPsNql5WD00NLEcy0lpxXkWc 7768
pbiotools/utils/pgrms/join_long_chromosomes.py sha256=ciClQIobYWIfHI9sGDIetJ5ScmrLy4PS0RSkN9_p-pg 2808
pbiotools/utils/pgrms/merge_isoforms.py sha256=vPOdJc0iIpNRKk1VdixkSF3K6P93vZ10TvYePqi6Fnk 6662
pbiotools/utils/pgrms/remove_duplicate_bed_entries.py sha256=jDPqeJmMymGSL2tMYn4NQJ5eK76_natiWk-8WixmQEk 2128
pbiotools/utils/pgrms/remove_duplicate_sequences.py sha256=En41emuyuuZQK8l0AuZeLyFlQ4YOMebdcuszXUJqVhc 2409
pbiotools/utils/pgrms/remove_multimapping_reads.py sha256=ZmBj88Y6v7k1LFz_BeierLd82OU-zetrha3hn_5VeH0 1256
pbiotools/utils/pgrms/reorder_fasta.py sha256=h52TMyMWKUtChpRpXTQtXytRk34N8ZVX6tUC0ZGC3fs 2169
pbiotools/utils/pgrms/run_bowtie.py sha256=eA01XM46Ad2ArFO-hn0Hp5JW7WbDxI4CJK7KMSXYJbI 3052
pbiotools/utils/pgrms/run_signalp.py sha256=xjQcWD7cXskFXzCaibgITqS-PzHS4g_TQ1vRnWn7lBM 7790
pbiotools/utils/pgrms/run_tmhmm.py sha256=n1Sixcfh7rMCy8I97zKKp0u3KYATEf5xvreBkfdhpNo 4670
pbiotools/utils/pgrms/split_bed12_blocks.py sha256=q07Yer1WGWXaGxKIG3sdyX32zDCN-yefWq4Uv7mDXic 2523
pbiotools/utils/pgrms/split_long_chromosomes.py sha256=8Ap7IOEwshyzIVm1gHUfQ-yfQjVfnW8QN_ZXp9P8ncw 3832
pbiotools/utils/pgrms/subtract_bed.py sha256=_YzraOCKdtRLfR06_yFfpWHRWH0QCeB3EQcTXAyOBh0 6251
pbiotools-4.0.2.dist-info/LICENSE sha256=bkSaWnnQxwPq7W_JHLcFcex26bG6UeYaYxPLB4L7DdI 1071
pbiotools-4.0.2.dist-info/METADATA sha256=at0c8TuZwIc_zZb_54Abi6oK-e-ffBcQ9vHPFaXvAmA 3434
pbiotools-4.0.2.dist-info/WHEEL sha256=yQN5g4mg4AybRjkgi-9yy4iQEFibGQmlz78Pik5Or-A 92
pbiotools-4.0.2.dist-info/entry_points.txt sha256=t56okyRMJ-bmBzt91vHpuAAL7PWsaHxzE1Q_yfX3unk 2027
pbiotools-4.0.2.dist-info/top_level.txt sha256=gXxQwinh4x5q1dEnwFamIRNkFleZa9M5_RviJ3K9hLA 10
pbiotools-4.0.2.dist-info/RECORD — —

top_level.txt

pbiotools

entry_points.txt

[console_scripts]
add-mygene-info-to-orfs = pbiotools.utils.pgrms.add_mygene_info_to_orfs:main
bam-to-wiggle = pbiotools.utils.pgrms.bam_to_wiggle:main
bed12-to-gtf = pbiotools.utils.pgrms.bed12_to_gtf:main
bedx-to-bedy = pbiotools.utils.pgrms.bedx_to_bedy:main
convert-ccds-to-bed = pbiotools.utils.pgrms.convert_ccds_to_bed:main
count-aligned-reads = pbiotools.utils.pgrms.count_aligned_reads:main
count-reads = pbiotools.utils.pgrms.count_reads:main
create-mygene-report = pbiotools.utils.pgrms.create_mygene_report:main
dna-to-aa = pbiotools.utils.pgrms.dna_to_aa:main
download-srr-files = pbiotools.utils.pgrms.download_srr_files:main
extract-bed-sequences = pbiotools.utils.pgrms.extract_bed_sequences:main
extract-cds-coordinates = pbiotools.utils.pgrms.extract_cds_coordinates:main
fasta-to-fastq = pbiotools.utils.pgrms.fasta_to_fastq:main
fastq-pe-dedupe = pbiotools.utils.pgrms.fastq_pe_dedupe:main
filter-bam-by-ids = pbiotools.utils.pgrms.filter_bam_by_ids:main
fix-all-bed-files = pbiotools.utils.pgrms.fix_all_bed_files:main
get-all-utrs = pbiotools.utils.pgrms.get_all_utrs:main
get-read-length-distribution = pbiotools.utils.pgrms.get_read_length_distribution:main
gtf-to-bed12 = pbiotools.utils.pgrms.gtf_to_bed12:main
join-long-chromosomes = pbiotools.utils.pgrms.join_long_chromosomes:main
merge-isoforms = pbiotools.utils.pgrms.merge_isoforms:main
remove-duplicate-bed-entries = pbiotools.utils.pgrms.remove_duplicate_bed_entries:main
remove-duplicate-sequences = pbiotools.utils.pgrms.remove_duplicate_sequences:main
remove-multimapping-reads = pbiotools.utils.pgrms.remove_multimapping_reads:main
reorder-fasta = pbiotools.utils.pgrms.reorder_fasta:main
run-bowtie = pbiotools.utils.pgrms.run_bowtie:main
run-signalp = pbiotools.utils.pgrms.run_signalp:main
run-tmhmm = pbiotools.utils.pgrms.run_tmhmm:main
split-bed12-blocks = pbiotools.utils.pgrms.split_bed12_blocks:main
split-long-chromosomes = pbiotools.utils.pgrms.split_long_chromosomes:main
subtract-bed = pbiotools.utils.pgrms.subtract_bed:main