Reverse Dependencies of parasail

The following projects have a declared dependency on parasail:

• abutils — Utilities for analysis of adaptive immune receptor repertoire (AIRR) data
• capfinder — A package for decoding RNA cap types
• comptg2 — Telomeric allele scoring tool for output from Telogator2.
• decoil — EcDNA reconstruction from long-read nanopore data
• fixalign — find and fix missed small exons
• genofunc — no summary
• IsoCon — Pipeline for obtaining non-redundant haplotype specific transcript isoforms using PacBio IsoSeq reads.
• isONclust — De novo clustering of long-read transcriptome reads.
• isONcorrect — De novo error-correction of long-read transcriptome reads
• isONform — De novo construction of isoforms from long-read data
• Liftoff — A gene annotation mapping tool
• lifton — Combining DNA and protein alignments to improve genome annotation with LiftOn
• MisER — Find and fix missed small exons.
• MisSER — Find and fix missed small exons.
• nuclease-off-target — Analyzing Nuclease Off-Target Sites and Activity
• oligopool — Oligopool Calculator - Automated design and analysis of oligopool libraries
• ont-bonito — no summary
• ont-guppy-duplex-pipeline — Oxford Nanopore Technologies duplex pipeline scripts for guppy
• ont-remora — Nanopore methylation/modified base calling detached from basecalling
• opfi — A package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics datasets.
• palmotif — Python package for computing and plotting sequence logos, with output as SVG or matplotlib
• pdm-utils — MySQL phage genomics database management utilities
• phamclust — Cluster genomes based on gene phamily data
• porechopx — no summary
• primalscheme — primalscheme is a tool for designing primer panels for multiplex PCR
• ProtCHOIR — A Modeller-based pipeline to generate homo-oligomers.
• pwseqdist — Efficiently computes distances between protein sequences
• savemoney — Simple Algorithm for Very Efficient Multiplexing of Oxford Nanopore Experiments for You!
• scikit-bio-parasail — no summary
• scirpy — Python library for single-cell adaptive immune receptor repertoire (AIRR) analysis
• strkit — A toolkit for analyzing variation in short(ish) tandem repeats.
• Structuralia — A toolset to work with proteins
• tcrdist3 — flexible distance measures for comparing T cell receptors
• yabul — Yet Another Bioinformatics Utilities Library