panpipes
View on PyPI — Reverse Dependencies (0)
1.1.0 | panpipes-1.1.0-py3-none-any.whl |
Wheel Details
Project: | panpipes |
Version: | 1.1.0 |
Filename: | panpipes-1.1.0-py3-none-any.whl |
Download: | [link] |
Size: | 236190 |
MD5: | 54f96632e6c33be02f0e61af24efaabb |
SHA256: | 147d1a7d5c9f7e76c07c18b287cebbb3e85242594212f7905842927056a1bd90 |
Uploaded: | 2024-07-01 11:56:09 +0000 |
dist-info
METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt
METADATA
WHEEL
Wheel-Version: | 1.0 |
Generator: | setuptools (70.1.1) |
Root-Is-Purelib: | true |
Tag: | py3-none-any |
RECORD
Path | Digest | Size |
---|---|---|
panpipes/__init__.py | sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU | 0 |
panpipes/entry.py | sha256=xcodYeDEsT0KbqBKQOcLCjXjCRH8TqnzQwY6uAeloIg | 2504 |
panpipes/funcs.py | sha256=CkTZRZkPj0HufxIHiMZh0KUIagKtsdhKe10mqlfBhp8 | 19 |
panpipes/version.py | sha256=42STGor_9nKYXumfeV5tiyD_M8VdcddX7CEexmibPBk | 22 |
panpipes/R_scripts/__init__.py | sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU | 0 |
panpipes/R_scripts/install_R_libs.R | sha256=C5_-33sOFoPU4OOwGPuddtCuYnilIWdevg_eGQuwEbM | 553 |
panpipes/R_scripts/plotQC.R | sha256=zPCxdS3u7URr6P9cqVUFpDznU0wvOeOI6PEzcUwFUJA | 21808 |
panpipes/R_scripts/plot_cluster_metrics.R | sha256=thynbcqI5ls4b1TIC6FisjrXTddjIx8R6GlhgDFq-c4 | 8292 |
panpipes/R_scripts/plot_metrics.R | sha256=5eGMaPdYpPhcXoQNyuyHPMSs7yz1pXMdClO5FISZMXE | 8632 |
panpipes/R_scripts/plotclustree.R | sha256=vF8YA9_HL2B8Cuy8vAJN-P5tGTrWQ74OEdmOqnLMnCY | 1205 |
panpipes/R_scripts/produce_barplot_10xmetric.v3.R | sha256=WrxPlimYXO-JjI8KAk7mXQ1IJ0RmsMJRE_rI42NWWdI | 9674 |
panpipes/R_scripts/refmap_wnn.R | sha256=UkiD1fjFOzKSaSyBRpUViiiuRlsyUiM0nmZkee3927Q | 4460 |
panpipes/funcs/__init__.py | sha256=-RVm8Ben8gulhbERuzS1VBdY0G6auVZACIHbYW4QE7E | 101 |
panpipes/funcs/io.py | sha256=OuaIaJ1ki659IJ6rgI0aGUTKbIdmsUDYH328a8OAELw | 26482 |
panpipes/funcs/plotting.py | sha256=JNGLkcYt8mO7R0tBEpx9NlvwrBv1UCQ_gsBwIXmwf6g | 17673 |
panpipes/funcs/processing.py | sha256=iXQ_flX9zvQ5fiZ4SBffGC36-gxJ_pSQndRrbD14r08 | 14463 |
panpipes/funcs/scmethods.py | sha256=AYpsSgwi7H0KSOJZbw6hhdwWIPMlxUWe5Gq7lRLXFHA | 22380 |
panpipes/panpipes/__init__.py | sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU | 0 |
panpipes/panpipes/pipeline_clustering.py | sha256=z-Nh-gM4wNY2G1CpfI2EJYbg2Jf3Ffti8H6E1nTYSks | 17687 |
panpipes/panpipes/pipeline_deconvolution_spatial.py | sha256=TweeUJa0mgXshkRtMzhQKf7NrkWobd101XiLN7r6tXg | 8959 |
panpipes/panpipes/pipeline_ingest.py | sha256=hGvS-W7WIh7WJauhmh9FNpWW8Vx0Z3DAvbP1PMKpcu4 | 27113 |
panpipes/panpipes/pipeline_integration.py | sha256=EVg4dW_ZGdpkaYv-n9YheTV993CSd-KaPVxe1VIht-8 | 38911 |
panpipes/panpipes/pipeline_preprocess.py | sha256=mOiZCUS1ekg40EadRqc-xnucLIYatF-89DwNj9oMh78 | 11859 |
panpipes/panpipes/pipeline_preprocess_spatial.py | sha256=IOT8HtyVC2i-xEfyqfDX4Ci16dDCwOrKOLo94nbPXBk | 6755 |
panpipes/panpipes/pipeline_qc_spatial.py | sha256=d3tIrpBoMHUGG-HoYINB_1Cg8is4CqoPFEW54jmmOiQ | 7784 |
panpipes/panpipes/pipeline_refmap.py | sha256=EVnPH_KhzraTVq_2bkEaYBmV7ZvTs3KHGF4fvBeXJmY | 6674 |
panpipes/panpipes/pipeline_vis.py | sha256=480gN_BnbVvjd7KnQIWImPrR2j2QB8XaUeRuJPqOOAo | 10317 |
panpipes/panpipes/pipeline_clustering/pipeline.yml | sha256=JVUNaDZAJgAA39rkUNStgDNeBMlyKnNaX7Cb6mJeOQM | 4135 |
panpipes/panpipes/pipeline_deconvolution_spatial/pipeline.yml | sha256=dTXvBKUtq9MvD9u-pAMdW0HHkelsbLk-__DaH22V9-U | 7733 |
panpipes/panpipes/pipeline_ingest/pipeline.yml | sha256=wFF71o7P-3L50TI6qPLfTwTXTne2YrEEpwKxLlt3L_w | 5352 |
panpipes/panpipes/pipeline_integration/pipeline.yml | sha256=lYBYUo0I90OlLdM6TsaU-1Tlg7bz85xQb1tmbW9-OOU | 5752 |
panpipes/panpipes/pipeline_preprocess/pipeline.yml | sha256=r9ycctXNV1rWPMtxQf3wzGQFovzLIMTDcCFJ8T0qdYk | 4733 |
panpipes/panpipes/pipeline_preprocess_spatial/pipeline.yml | sha256=HCYrmWPSCc1-OZjw5frUYzuDv6g4Ix4nNEWpXwmBl1I | 5870 |
panpipes/panpipes/pipeline_qc_spatial/pipeline.yml | sha256=xgl-luP-lHIqd0pwslV6JWuoCGSwAsWnsmo_lDf0N78 | 4025 |
panpipes/panpipes/pipeline_refmap/pipeline.yml | sha256=dzCTaWefl_5-M6neCOmoQBy-BlUWwYlweE6Bsiq3sCE | 4944 |
panpipes/panpipes/pipeline_vis/pipeline.yml | sha256=YDhb69zsaOxe_mGXYX6CNqs4rMGG83zu9RZAyRYpK74 | 4862 |
panpipes/python_scripts/__init__.py | sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU | 0 |
panpipes/python_scripts/aggregate_cellranger_summary_metrics.py | sha256=TBVsRcv3harAKBHxtBrKMvuASRQ0EVsK-6k-LispQq4 | 12887 |
panpipes/python_scripts/aggregate_csvs.py | sha256=ID-4GdeqH-TOdIWUyWTAX4U-9tXAD7ELeBTpRAdVF4k | 3049 |
panpipes/python_scripts/assess_background.py | sha256=iROTCa6JvPjC5D10j8P7YVr4RnBwKurmc-mz1km-mC4 | 10032 |
panpipes/python_scripts/batch_correct_bbknn.py | sha256=uq2beqekO6ykt9dUfT8ssrdvDofgV8B9oNYv_lfqRxM | 4573 |
panpipes/python_scripts/batch_correct_combat.py | sha256=YIGfRtEfIcEFzT5P7WU2MWwfgBwuQNV-rt1g1qya9bM | 3432 |
panpipes/python_scripts/batch_correct_harmony.py | sha256=oLPb-_3FqIi3LNHTngvQjZ84HMFnnX9uwMfRnGhxHdQ | 5696 |
panpipes/python_scripts/batch_correct_merge.py | sha256=cbKum21bz76arZLpTkKC3kJcBSZj1-hys7Fl-CW9Dxo | 3489 |
panpipes/python_scripts/batch_correct_mofa.py | sha256=llK04kojkjG8s9u6CbE8qqcvji74Ix6zo-yGCIwX1MA | 6699 |
panpipes/python_scripts/batch_correct_multivi.py | sha256=BS0BJCxjpZkryz2oMomqeFiqrJdlJrYzyR2Igjafrnk | 10327 |
panpipes/python_scripts/batch_correct_none.py | sha256=mk1pYFmpqVmEzo16q8sRv2HtZXM6WAvgb-em0eXpCXA | 4148 |
panpipes/python_scripts/batch_correct_scanorama.py | sha256=EmqDU2ESBQA_HA_ro9B0cYxHWvoTZy2W_egnrj16YNI | 5537 |
panpipes/python_scripts/batch_correct_scvi.py | sha256=Z5u3X9l6w3IYy8ULDlglcGx8wPo1f7Sq46m-v6cb0Mk | 7096 |
panpipes/python_scripts/batch_correct_totalvi.py | sha256=ExDjrsgsMbyYLCTBYG8YPTK1ENklOYec9hcizgIiQsU | 11306 |
panpipes/python_scripts/batch_correct_wnn.py | sha256=rTHILSnDwshl_eT4k_4naJj82xxozk0Rfbqt5_l-xKU | 8288 |
panpipes/python_scripts/collate_mdata.py | sha256=DC3OrmTZYFw0Kpzf09ZA8NvlbHBi-V_60nXJk9SXWTA | 3396 |
panpipes/python_scripts/concat_adata.py | sha256=61tbhKLmSdZ2AAJ764nWhKZ3O_3nOqPGPYH1pGoCq8I | 8790 |
panpipes/python_scripts/downsample.py | sha256=I0UiqcuUhJHonowRcc_WRW6acn8q10gif2OQno4_AhI | 2885 |
panpipes/python_scripts/generate_cellxgene.py | sha256=PgyexCiNtOpZH89gbrYPssaHkbjcVm_nXxdKVnC6wL0 | 3350 |
panpipes/python_scripts/integrate_wnn.py | sha256=4ryvhJEEF-Gg2QpXp5OIrTU8JTJhqkg9-4QLfvI1zk4 | 1841 |
panpipes/python_scripts/make_adata_from_csv.py | sha256=HQtA6KQFGU-chPc4L4PUiorWCsZ7xK50q4QSpLtj0Rs | 6948 |
panpipes/python_scripts/make_mudataspatial_from_csv.py | sha256=Cy8Wyp8XH7G69HdJEovxcXBXqTJ7h2iOqZoWh-idOTA | 6408 |
panpipes/python_scripts/plot_atac_qc.py | sha256=uaVxNudwBBzVqI6_zWDNdSgYvu1b3qwSN4SkFV8icdY | 80 |
panpipes/python_scripts/plot_cluster_umaps.py | sha256=6IWNjrnrp92X5VcQRwQw-iX4bVUOgLbSzS0rj8seTiI | 4183 |
panpipes/python_scripts/plot_custom_markers.py | sha256=AIk5PPjsJWAogdf6jDANVXMlhzH_mH7wLQD939DZxnQ | 5791 |
panpipes/python_scripts/plot_custom_markers_umap.py | sha256=Krp0E2jQu2wUDr9FmTthvB2O81FDYDg2teHkDJYBUH0 | 3939 |
panpipes/python_scripts/plot_features_scatter.py | sha256=sCp_ZhNFpdwReJATW1QCcorgVPrs9AximHsT6D0V30Y | 2325 |
panpipes/python_scripts/plot_pca.py | sha256=iQj2W080VMOmdXo2tnyCCNtpoVzcwxMWXdThhRXfICE | 1795 |
panpipes/python_scripts/plot_qc_spatial.py | sha256=HL9IQaWAVS2BYa0WBlV94uSvsR4BeI4DtifrNolTF08 | 5749 |
panpipes/python_scripts/plot_scanpy_markers.py | sha256=nrFHDwGD5nLEWtkmNjSdxGvTf9Xlv13BkXEFZTCwhZ8 | 5271 |
panpipes/python_scripts/plot_umaps_batch_correct.py | sha256=3tTM_B7ylrYyOiLHvVbTi59LOO8kv0cIJf4HbCkWTwY | 8077 |
panpipes/python_scripts/plot_variables_umaps.py | sha256=ThJ-3x5k_SuSoYLOOJYraE9gJIWOsbpchiTQ8aVO3No | 3884 |
panpipes/python_scripts/refmap_generatescanvi.py | sha256=i2Vsscszm5WmudUP4IBPvywRvikFzksOHuyKX3GmIPY | 2846 |
panpipes/python_scripts/refmap_plot_umaps.py | sha256=Fkjj1PO8OJcH8poELmMpSmCAOz-C0b7un1BVdS9EKeY | 1469 |
panpipes/python_scripts/refmap_scib.py | sha256=s5CCqypr4UTuigoB4BpKkj_jEHa0vnuptd74CBNQ6H4 | 4151 |
panpipes/python_scripts/refmap_scvitools.py | sha256=GFfNlbssA7b-rNOtWWuxdavx5owJQyodKIcsEsGzf18 | 17553 |
panpipes/python_scripts/rerun_find_neighbors_for_clustering.py | sha256=J3yk_ky-fYqworjSwdtdlNnCbRcfTMchmzOqA-XuIks | 3693 |
panpipes/python_scripts/run_cell2location.py | sha256=O8B-2Nmvm0RuoQ0fGEJeoIbtxzNZDDAmHq6dyVWq8Hw | 13963 |
panpipes/python_scripts/run_clustering.py | sha256=lYpSRS2_POpGE-r04MY9myTAwkGk-fxdm6ckuTrXJPs | 3270 |
panpipes/python_scripts/run_collate_mtd_files.py | sha256=IxpeFRmH-7EB9Pwy7I_FW0U7bL6RATfyZzOGk8zZNlQ | 5289 |
panpipes/python_scripts/run_differential_peaks_ATAC.py | sha256=pzIRCxFOKSVM_RQhZ_37E9bZPJjgYBThOGsDZQKGGWg | 69 |
panpipes/python_scripts/run_dsb_clr.py | sha256=ZNrP9pV20SszVjpfDkj3my2DVaxjSlXTQnWvcHejBvY | 8791 |
panpipes/python_scripts/run_filter.py | sha256=vjXWU7O8bYmHeI7zz_1mvoDVy2r6uWo-ZXLq0dkpmBc | 8344 |
panpipes/python_scripts/run_filter_spatial.py | sha256=GZd2LB0uZlZEbg9ljfyp4D0ck4CHrLbCGJ9cRDwF9MI | 7140 |
panpipes/python_scripts/run_find_markers.py | sha256=ij2A-gbdaT5dxQ37gXnM4qcHYZeh8MYDtxNCkOQo_kY | 6716 |
panpipes/python_scripts/run_find_markers_multi.py | sha256=jZbZDj7IK3bKDLFyeuUero9PVC5Lad6CTilcLetWfSM | 9685 |
panpipes/python_scripts/run_find_neighbors.py | sha256=W382ByAF62L5Ge1WbJBGXEme801ldb8eEonmu7uiXy4 | 2763 |
panpipes/python_scripts/run_lisi.py | sha256=q3Kv9sV6lw9va1l0t8JkIKYsQeiEMPLA94GETnWM_7k | 4422 |
panpipes/python_scripts/run_preprocess_atac.py | sha256=9qcutY2Vovl_4U__NcHjfiOXBCR3zJt4EJ5wG5L30EQ | 9889 |
panpipes/python_scripts/run_preprocess_prot.py | sha256=aae1UfSHboE1EuGRyAPMjutcKj681xhhWk_XLygbtyI | 13809 |
panpipes/python_scripts/run_preprocess_rna.py | sha256=ZvhESr1i0E_xwOJfyvUArF3HFk9TgSQ3J3ebWvWZ1BE | 9004 |
panpipes/python_scripts/run_preprocess_spatial.py | sha256=hDdYJ6sgJRUyYe0STVo2XpNKWL30UiYi6jj0rrSxy3M | 6820 |
panpipes/python_scripts/run_scanpyQC_atac.py | sha256=N-iT_dgz5aCK42CpE71bKZjtpVZi_hl3gwACeZNAopY | 7210 |
panpipes/python_scripts/run_scanpyQC_prot.py | sha256=qFPIK3rXs8ZQmTHtG0RvKMxQBOi9uyoCjtDfdoCStiE | 6924 |
panpipes/python_scripts/run_scanpyQC_rep.py | sha256=SbNAy9zQEhSPMSCt9r3Woq5az-45__ze9y5K20Bxk3o | 4969 |
panpipes/python_scripts/run_scanpyQC_rna.py | sha256=uHYBkbQDEC4yougS5B5OF5sFgOeyi7mGhV8jFDUsuxY | 6937 |
panpipes/python_scripts/run_scanpyQC_spatial.py | sha256=TwN8vkmiCiOkb2F-nF0dOx1EGYnZhUAjxXCn7c7QqC0 | 6441 |
panpipes/python_scripts/run_scib.py | sha256=EoHFyHetA0mmeFgu7hiT32yWwvND54WSSvBSEnU9_Zw | 5165 |
panpipes/python_scripts/run_scib_metrics.py | sha256=pK57_iTmfwI0HIQavNJqCMOJD2Y20X5-rGYo4ae9UTM | 3754 |
panpipes/python_scripts/run_scrublet_scores.py | sha256=xWTXD1pLBQHt7g_pNItclcD6aWiFm1aZ7QJdAhyBPtI | 5891 |
panpipes/python_scripts/run_tangram.py | sha256=6OFelw49IsvYr-nshfzSdnb4KuAo-lOlUNCrcypwWEE | 6324 |
panpipes/python_scripts/run_umap.py | sha256=USEWTBCRU1O_teKkZVXu35kBf_KNPwZ9a8ps5VjX2Dk | 2912 |
panpipes/python_scripts/subtract_scrublet.py | sha256=S9eP-vG0_Rkt1fsW-4UP9VMm3-pxMxuXeg85cfRUVUM | 2872 |
panpipes/python_scripts/write_metadata.py | sha256=3pAmdNKHmEL2GSy9EqnqnzCMQPaZCMK5PD5Qu7ihD_o | 893 |
panpipes/resources/__init__.py | sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU | 0 |
panpipes/resources/cell_cycle_genes.tsv | sha256=qgkGooYbMpfCTCUBXPYR2cx0aQlTZgWZ3_ZhJeqpOYM | 877 |
panpipes/resources/metrics_summary_col_conversion.tsv | sha256=z8jqHehLiwsGUsaOl7PxTUYS_pMLEveXbHccK9IIyZk | 9169 |
panpipes/resources/mouse_cell_cycle_genes.tsv | sha256=zxCkt7zzlelApA1HBwU5j0WGU6Kyg9-bYQ0BHbGOVtk | 1159 |
panpipes/resources/qc_gene_list_mouse.csv | sha256=8c-xiAmNrQpEhRQ8uvPgBhsq9IrLtVDZ-HPIbkuDuWk | 4280 |
panpipes/resources/qc_genelist_1.0.csv | sha256=vo8Geb6FnwHLpmibcfWwiTx44-Q_yAbeGbRpbIpN51k | 22859 |
panpipes/resources/sample_file_inc_demultiplexing.txt | sha256=3LyGqUnR7PKsfPysV2JAP1BHStSvE9GFMfub1h8hdYw | 438 |
panpipes/resources/sample_file_qc_atac.txt | sha256=VNTENu6B3kvcK_E_FHHqhmR7rLVQ6MKZDgH6gUbax7M | 367 |
panpipes/resources/sample_file_qc_mm.txt | sha256=U-PSDNgbhQjFv05UPwiuP4FpaIL70t5nWWWpIAkrkRM | 264 |
panpipes/resources/sample_file_qc_mm_gex_only.txt | sha256=U-PSDNgbhQjFv05UPwiuP4FpaIL70t5nWWWpIAkrkRM | 264 |
panpipes/resources/sample_file_qc_multiome.txt | sha256=YVgajhPa26UZWa8DYO9jJIlVXMfDyKmJ4gDzdtUmNyM | 391 |
panpipes/resources/sample_file_qc_multiome_cellranger.txt | sha256=iPiCs8ihwS6IAgmUojP5HlBYb1SDt4Q5z1J4FPK2XIM | 341 |
panpipes/resources/sample_file_qc_spatial.txt | sha256=XFE_U0tYMIsRfX3o0daTPpsfJLYButHZUSikmL7N3ZU | 530 |
panpipes-1.1.0.dist-info/LICENSE | sha256=pRZXesBzp0QxB1FCar3YC3t1Tnb7nScM0AV3fv7_nvo | 1518 |
panpipes-1.1.0.dist-info/METADATA | sha256=LDTxxlFbG3_Icr0VJ0EO3z9bLNGSzB3ICMSRg99o_fY | 5352 |
panpipes-1.1.0.dist-info/WHEEL | sha256=mguMlWGMX-VHnMpKOjjQidIo1ssRlCFu4a4mBpz1s2M | 91 |
panpipes-1.1.0.dist-info/entry_points.txt | sha256=403hA1hurr9sA7vphqIMtL-U1tb1R5YDdpONcBzgRes | 49 |
panpipes-1.1.0.dist-info/top_level.txt | sha256=m0S-HJ-24G2lSB0CnbYQ2kK9lNgDnSMLd-CD2G-9d7c | 9 |
panpipes-1.1.0.dist-info/RECORD | — | — |
top_level.txt
panpipes
entry_points.txt
panpipes = panpipes:entry.main