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PacbioDataProcessing

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1.3.0 pacbiodataprocessing-1.3.0-py3-none-any.whl

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Project: PacbioDataProcessing
Version: 1.3.0
Filename: pacbiodataprocessing-1.3.0-py3-none-any.whl
Download: [link]
Size: 90479
MD5: 0c9d4ac811a644e725c0314d9c002a77
SHA256: 1571e1a820c096bcf73ebb5ccdd9e57974a2622f1114c50ade2a9ca7dcd39fa1
Uploaded: 2022-12-23 15:17:52 +0000

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METADATA · WHEEL · RECORD · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: PacbioDataProcessing
Version: 1.3.0
Summary: Tools to process PacBio sequencing data at molecule level
Author-Email: David Palao <david.palao[at]gmail.com>, David Velázquez <david.velazquez[at]protonmail.com>
Maintainer-Email: David Palao <david.palao[at]gmail.com>
Project-Url: Documentation, https://pacbio-data-processing.readthedocs.io/en/latest/
Project-Url: Source, https://gitlab.com/dvelazquez/pacbio-data-processing
Keywords: PacBio,DNA,biology,sequencing,methylations
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.8
Requires-Dist: biopython
Requires-Dist: pysam
Requires-Dist: pyfaidx
Requires-Dist: matplotlib
Requires-Dist: seaborn (~=0.12)
Requires-Dist: pandas
Requires-Dist: numpy
Requires-Dist: bump2version; extra == "dev"
Requires-Dist: flit; extra == "dev"
Requires-Dist: watchdog; extra == "dev"
Requires-Dist: Sphinx; extra == "doc"
Requires-Dist: Sphinx-Substitution-Extensions; extra == "doc"
Requires-Dist: sphinx-prompt; extra == "doc"
Requires-Dist: Gooey; extra == "gui"
Requires-Dist: psutil; extra == "test"
Requires-Dist: pytest; extra == "test"
Requires-Dist: pytest-runner; extra == "test"
Requires-Dist: pytest-cov; extra == "test"
Requires-Dist: pytest-subtests; extra == "test"
Requires-Dist: flake8; extra == "test"
Requires-Dist: tox; extra == "test"
Requires-Dist: coverage; extra == "test"
Provides-Extra: dev
Provides-Extra: doc
Provides-Extra: gui
Provides-Extra: test
Description-Content-Type: text/x-rst
[Description omitted; length: 1980 characters]

WHEEL

Wheel-Version: 1.0
Generator: flit 3.7.1
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

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pacbio_data_processing/bam_utils.py sha256=O42bqNBO6zSU1dw2TF6tfTtgyRSHXT39hHkII8gDYgM 20989
pacbio_data_processing/cigar.py sha256=Rr6WjhUzhMQk6glXGJq6tPAm4PWWE96oaeuBgz499Lo 3798
pacbio_data_processing/constants.py sha256=-MsL_UDoZd7euLRkirnkgukC0d1q7S6uGPjFaQf-F_E 4875
pacbio_data_processing/errors.py sha256=8na8mLrqPG3ZecXirui3tABun9LSjgApMeRfyodHOsw 1706
pacbio_data_processing/external.py sha256=rgevWf70fABnqsB433vXcz_meJZN-cMwP0-PaBdlHfk 8262
pacbio_data_processing/filters.py sha256=C9aoeAruTV2cSjATR0-kkIm7s1MfefRL7e63dnx36Iw 7123
pacbio_data_processing/ipd.py sha256=Avrk-3F0jULZy9-yhtgR8GpHwi7q3bXg_1TOXKmQ7EQ 6383
pacbio_data_processing/logs.py sha256=ab_SB0zXO9xdfQDHaPwhsA6RNoO56VZ7LWVKRVx0Oro 1264
pacbio_data_processing/methylation.py sha256=k5qYQK8u8hm_MPRGU8xD3l5QLxoGQuiLQVloZx-ejlY 8507
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pacbio_data_processing/sam.py sha256=3MeK3BKlj3oXfKIR3UiGqgaRKjYN7lhcDQGpgZy1FNM 1062
pacbio_data_processing/sentinel.py sha256=2YkMZv0BATKjvIoWJ-FoynULuqAQ9mj1zeIWQSjora8 4053
pacbio_data_processing/sm_analysis.py sha256=KIJWMwEQ0aMikVH8mQS1BMf8zevPD2NRyg-W0x4mfUU 47690
pacbio_data_processing/sm_analysis_gui.py sha256=f9yDWrG1W-W_EV0eQ-5-V261metoV4y-KXKB21G4XSg 1364
pacbio_data_processing/summary.py sha256=Nh_efbcDGOyVEWNLmF8vxXgZMV__IC5wrDAs4jEUBB8 32658
pacbio_data_processing/templates.py sha256=sgYrSxXNUJLw_NE1LAMW97mBRUTADNFtufzOJmZ6ulg 8504
pacbio_data_processing/types.py sha256=5x-rnput12BzqYaiRrw2gnnoxYa32pUV669_RdIlYIY 998
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pacbio_data_processing/ui/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
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pacbio_data_processing/ui/common.py sha256=c1tKy47bU387TnlCnQUnHhErpXooQqiW9pDeqMOcby8 1159
pacbio_data_processing/ui/gui.py sha256=WNZku62UGDd2Oe6_AqfdDbNls_0Kolle2mPjcCU1mss 4369
pacbio_data_processing/ui/options.py sha256=xJ36E12wT4lTWPSBC5g55J4L8acquI-s7HRiBi9nadI 11382
pacbiodataprocessing-1.3.0.dist-info/entry_points.txt sha256=nM_W9Mbq3VghoDGfLhBwnvlY_21DWTeJO_cboBZQIwM 208
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pacbiodataprocessing-1.3.0.dist-info/RECORD — —

entry_points.txt

[console_scripts]
bam-filter = pacbio_data_processing.bam_file_filter:main
sm-analysis = pacbio_data_processing.sm_analysis:main_cl
[gui_scripts]
sm-analysis-gui = pacbio_data_processing.sm_analysis_gui:main_gui