Path |
Digest |
Size |
orthoflow/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
orthoflow/config/config.yml |
sha256=KGhj9HuSeYE4sxU8JYqgaFteTXOFp8x1j8HnXV7xrug
|
3129 |
orthoflow/main.py |
sha256=XN6RMU0cUn47XSs1wWWX3Gb9ChE3mqYeI2RdaX64rDk
|
3679 |
orthoflow/profiles/local/config.yaml |
sha256=VWRGBlvLo8AkJSOoSu_bOeJqaZSsq7aeterSo3CVfdA
|
92 |
orthoflow/profiles/slurm/config.yaml |
sha256=LYPhQK_-ckIbMfoXvkRFOgHkaWG7FwS5p-9XyuR8ZQM
|
985 |
orthoflow/profiles/slurm/slurm-cancel |
sha256=dd2CQMFSj23kdLbZTgkxThgOkZSLTVz7l6fPAG8BT4Q
|
50 |
orthoflow/workflow/Snakefile |
sha256=WxdJRQrAe7WCo7FHz0bg4ehJWfqRXEW7Is0yY9FaYvU
|
4202 |
orthoflow/workflow/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
orthoflow/workflow/bibs/TranslatorX.nbib |
sha256=Achz49unN6eFahKSszwvfbihSszCxCak1zEppXMhY7M
|
2868 |
orthoflow/workflow/bibs/astral-iii.ris |
sha256=Y17aii9VzXm_5PRvTsZRkGm8ao3oORjH1x4-azrhcFM
|
853 |
orthoflow/workflow/bibs/biokit.bib |
sha256=E4ycSQX3oyvhm2UeXi_4ojd49bX3N_ostf2g4bY9dvU
|
595 |
orthoflow/workflow/bibs/biopython.bib |
sha256=kHV-ahCyn6bCr4xgF8GZrMgEdSkFU_-a-euP-Z9p8VE
|
1560 |
orthoflow/workflow/bibs/clipkit.bib |
sha256=A_pKK7INCbwSNLwHjvHiyty_B6Ik4zp54QNURibzJJQ
|
1896 |
orthoflow/workflow/bibs/ete.ris |
sha256=1OcM9MD0S50CtwVcxThwB1HwGOhd6ZI6d-3-buyOOJ8
|
1019 |
orthoflow/workflow/bibs/gbseqextractor.bib |
sha256=p9bYLk28I3SazdvDeI_e37Kdb5JAPBXDZQX3YH_aZ6A
|
303 |
orthoflow/workflow/bibs/iqtree2.bib |
sha256=DqXy3Dno9P094Monn6tzOJKaLMh7SFpcEZk4WnyeoTA
|
1203 |
orthoflow/workflow/bibs/mafft7.bib |
sha256=T1FYq5NeGgkP9gXMcoTYjtuRDzKF862TM8TYJR0I-a4
|
1202 |
orthoflow/workflow/bibs/modelfinder.ris |
sha256=yYuzqAV1KJ_qsshxijrMF6dfEnSnYGpjPyemsbUDjP4
|
523 |
orthoflow/workflow/bibs/orthofinder.ris |
sha256=CUevRihyToMAH_5zD7uCBAufAzQH8-p37PeCz-Dm2vU
|
1115 |
orthoflow/workflow/bibs/orthofisher.nbib |
sha256=dvlps5IgK-iUjVRcqmhbp06_vmq16BE_HcNCI1eMI0U
|
3107 |
orthoflow/workflow/bibs/phykit.bib |
sha256=HfQLvUm4w_eR3QeC-uJ36P62TnOBxnUqlH5dQXbcwDo
|
2318 |
orthoflow/workflow/bibs/toytree.bib |
sha256=YH3dW9aeW0j3EC9dh6c6nfh_iMg7Rbbz0KRyHFC4WB0
|
291 |
orthoflow/workflow/bibs/ultrafast-bootstrap.bib |
sha256=1PnmNdj8BQm9kGomihiqXmWiLIHQSlMosMnn8NiLqXs
|
1510 |
orthoflow/workflow/envs/astral.yaml |
sha256=l2XcAIQYf_EQTsUp5xVkOziSTI1T0BmPlCWzU9DvWWA
|
74 |
orthoflow/workflow/envs/biokit.yaml |
sha256=ClxGsbU4__jVjxRhbD0L0tRLy0fJ7cXNLMYgOchiKU0
|
137 |
orthoflow/workflow/envs/biopython.yaml |
sha256=TAzdnBYZO3G4m0jF1zVIGJs-2zNTeMpBHYXqF9OtE60
|
64 |
orthoflow/workflow/envs/clipkit.yaml |
sha256=9fVxvr1NLOGy7QpEfQjMoE3ZB6HbEud2Ee8eOSACQI0
|
107 |
orthoflow/workflow/envs/ete.yaml |
sha256=ZoL_1P1m_lJgRlxuJUNJsceMl3KLAZo5Ce6em7qYx_8
|
85 |
orthoflow/workflow/envs/iqtree.yaml |
sha256=ctEJLRCKuLthpHSu7ty99aPSd49r1EA19IFYjbjG9p4
|
103 |
orthoflow/workflow/envs/jinja.yaml |
sha256=bPYDwyu9d_io7xoRN8IHtlcyWjzF4TDG90d9d-udqjU
|
87 |
orthoflow/workflow/envs/joblib.yaml |
sha256=WkF6gid1msOov7vJnF4GCK4Ni6WPQBR4_zEerE3AIa8
|
115 |
orthoflow/workflow/envs/mafft.yaml |
sha256=aU-3R0gZ6qIMfOp9Of8cn0wWdfYwNYnpL_FBBRzk6HE
|
81 |
orthoflow/workflow/envs/matplotlib.yaml |
sha256=yEUEByrKNY_8GMgOLcWs9tpdMVGypYNVYUM5kRR8UdE
|
54 |
orthoflow/workflow/envs/orthofinder.yaml |
sha256=5s9g98ofcnfv0TeEVKQhiPwmi3l_2mjCTfeiY-_yM2k
|
93 |
orthoflow/workflow/envs/orthofisher.yaml |
sha256=aQONJWX9A_bvNs5hJXdY0J_tvoJ3qeFWOJ6N2ECtGUY
|
157 |
orthoflow/workflow/envs/orthosnap.yaml |
sha256=2MdNCpEic2QXH68jEszebmHS8YM2w-1K1mn78JBysiw
|
263 |
orthoflow/workflow/envs/perl.yaml |
sha256=7l_YXRwlYeZ7y2MrhzwP7TY4E9OmQxhEUYi_E_1gfDk
|
49 |
orthoflow/workflow/envs/phykit.yaml |
sha256=U8XHDtwtY2pDY59YMmxU0DqYOYjZFfYPsTkFNVZf9ps
|
107 |
orthoflow/workflow/envs/samtools.yaml |
sha256=cZN5a0uevACNb3tlgN35TYE-1h_-ivS5T-VxJZZbnnk
|
85 |
orthoflow/workflow/envs/seaborn.yaml |
sha256=tBfMlwz76rhl1hMWIDf2oKKyV-2pFWjA5eTyxjx3cQI
|
51 |
orthoflow/workflow/envs/summary.yaml |
sha256=nZoJbXqLWqTO3QD49TZ19z1_lkSyxbDqXp2cFm5ZxV4
|
255 |
orthoflow/workflow/envs/toytree.yaml |
sha256=jVgqbnSEKwcm1OVK1KmQ-VpERJbDmc6YZQkyye_rf5w
|
146 |
orthoflow/workflow/envs/typer.yaml |
sha256=XFypJ1PKXeEcPvx69DZHxijJ9-5Y0V8dwhhuvjx516o
|
97 |
orthoflow/workflow/report/alignment.html |
sha256=ZrtYJB9vT3fRbYg-5JXCvpVpuAtNFekvOajDfBxgFdA
|
993 |
orthoflow/workflow/report/alignment_summary.rst |
sha256=Cs-wN6zHsYYmnjD4ZU3_s5cKNNifL8bXMfSg2Qzxwt8
|
35 |
orthoflow/workflow/report/assets/css/bootstrap.cosmo.min.css |
sha256=1QMn0orFWnN6ZvqKlZCpabeY9PAvvIFcVndIneDMNeU
|
186259 |
orthoflow/workflow/report/assets/img/orthoflow-favicon.png |
sha256=OkWQgbNFotTmQu-JVT3OOmUgbGkQs81sQOjZ2305hPM
|
1411 |
orthoflow/workflow/report/assets/img/orthoflow-logo-black.svg |
sha256=E19KTi1Qg5qkaY2N3SkoSQQlkk0uCCxz-1_jnk1byso
|
34920 |
orthoflow/workflow/report/assets/img/orthoflow-logo-blue.svg |
sha256=39JJ6h1mIFlKuf6I5P_CafE980npVf26yAX1knzrXqs
|
34941 |
orthoflow/workflow/report/assets/img/orthoflow-logo-white-on-blue.svg |
sha256=OZJQtpTdtnWm0_d5j9JVpx4WOE7En-q3ZkRGjheZxX8
|
35359 |
orthoflow/workflow/report/assets/img/orthoflow-logo.svg |
sha256=klTyEjKuUlBIVSIoWG_9f5ohpk4sxNdzeJhxGgDjog8
|
35282 |
orthoflow/workflow/report/assets/vendor/bootstrap-5.0.2.min.js |
sha256=fh8VA992XMpeCZiRuU4xii75UIG6KvHrbUF8yIS_2_4
|
78743 |
orthoflow/workflow/report/assets/vendor/feather-4.28.0.min.js |
sha256=XfzdiC-S1keia-s9l07y7ye5a874sBq67zK4u7LTjvk
|
75779 |
orthoflow/workflow/report/assets/vendor/prism-1.23.0.min.js |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
orthoflow/workflow/report/assets/vendor/prism-coy-1.23.0.min.css |
sha256=gkHLZLptZZHaBY-jqrRkAVzOGfMa4HBhSCJteem8wy8
|
3061 |
orthoflow/workflow/report/assets/vendor/prismjs-bibtex-2.0.1.js |
sha256=C21978BGfyfGR6uCBoWoRGUBgraY7ukGCXhNcR6caxk
|
1412 |
orthoflow/workflow/report/bibliography-content.bib |
sha256=jdyHcXVBg1AP44dMhVwyPFnCkRA_gNJolSCLqQi-1fc
|
11819 |
orthoflow/workflow/report/bibliography-content.html |
sha256=9GMLYieloefT_zb-UCGhXfZ-Vaqil-m0Ih2hEuyeYXI
|
6088 |
orthoflow/workflow/report/bibliography.html |
sha256=UmoAGPLwbyENkH8oa3OIIn55jln4szKy41LOE7iul8A
|
831 |
orthoflow/workflow/report/genetree.html |
sha256=smMbrV2Km3A49ctxioxFWlfOb-GifWC2GlfpUJCX0XQ
|
4126 |
orthoflow/workflow/report/intake.html |
sha256=5JSNiOTAwrksrmA_dmH-6kwtJDduM2fyf75deg1tbbg
|
77 |
orthoflow/workflow/report/orthofinder.html |
sha256=j3Hf8vZC5nB1x6JpPLMS4eeXuh_b3ffRGeDmTS_5Z9Q
|
2316 |
orthoflow/workflow/report/orthofisher.html |
sha256=gvg-nwsBYwB7HVlPfRzDBYvkKONKh674jzKaUWb0VEU
|
21 |
orthoflow/workflow/report/overview.html |
sha256=hK1lMyp3M2HMd1yZawuINPWTPkLAflE0hjhZpw8q8_s
|
18 |
orthoflow/workflow/report/report-template.html |
sha256=tiPmYSf6nfkYkwX1ExlZGETcFmjKmCGl5bP2ZbpRaw4
|
12857 |
orthoflow/workflow/report/supermatrix.html |
sha256=enMqGK0SMIYk_ptnU8mWnl868VtRI708PLrIroPQbps
|
2486 |
orthoflow/workflow/report/supertree.html |
sha256=EIqlO1V0pc66-ErJMOVZuQga3XKTF5idA2wdhEMiprk
|
86 |
orthoflow/workflow/report/warnings.html |
sha256=Xm3uOcNHZakrpD-bmDJdgEKWdDoQvv5AwzrlP7m-Gjo
|
279 |
orthoflow/workflow/report/workflow.html |
sha256=-9OzbpbY40wsGzmY0Yd8A7o2qqNGsGVRqvADJbRPRXI
|
52 |
orthoflow/workflow/rules/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
orthoflow/workflow/rules/alignment.smk |
sha256=aofNIk63qun2cskdnCLdNNvrZgTjw3233STxeqrq7L0
|
9911 |
orthoflow/workflow/rules/gene_tree.smk |
sha256=uOXFWjG7nlsgXLNo_jKF2rDcpAG-VdHPWZgctTOjQpw
|
2373 |
orthoflow/workflow/rules/intake.smk |
sha256=ltQ8vfgkFWw0CgzASuXaWEecc2wzf-pSWgbqFHiBUAw
|
2988 |
orthoflow/workflow/rules/intake_utils.py |
sha256=ljV0AJTNcbR1tjwPchq3HPSCV4Uhl_phZg2WGyXOzEM
|
17099 |
orthoflow/workflow/rules/orthofinder.smk |
sha256=d0WwhJbdoSu0QvJKKR6DBhb3c9-1oR4MExl5NvaLZ28
|
7768 |
orthoflow/workflow/rules/orthofisher.smk |
sha256=AttIFAzasNEmlOgYjpnugM3qr1LW7ubnnWxCMum6o3E
|
2888 |
orthoflow/workflow/rules/report.smk |
sha256=FNwEVD_2Ec7riKIVXg-IRm8TVquahyjb0uXPVOlMti8
|
5753 |
orthoflow/workflow/rules/summary.smk |
sha256=56gYjHpel5jC8cuTsh2IJ4BE90XIAgswQbH7s1XXNO4
|
1362 |
orthoflow/workflow/rules/supermatrix.smk |
sha256=t0TRguuY8PHHT6PrWAmZCoBB-6-8W02uJ-QSkblDa4s
|
4250 |
orthoflow/workflow/rules/supertree.smk |
sha256=IRkSpgCFPU6ikxtpM7FLcrkS9gCn0gugT6x8_tcSfwk
|
2591 |
orthoflow/workflow/scripts/add_taxon.py |
sha256=Rqodliq0TZa2z8hwJRxTp6zwpW0Pg38G0vVxRauC9Ic
|
1286 |
orthoflow/workflow/scripts/check_config.py |
sha256=GhDuHDDDZD8omr9vbGUzPfNXwRUZ-jAuAl4eN9H7DTY
|
3437 |
orthoflow/workflow/scripts/filter_SCOG.pl |
sha256=d2AWfya9pAAWetx8B_8mZ4j8dyWuCTSxTdWE-9wcUvE
|
538 |
orthoflow/workflow/scripts/filter_alignments.py |
sha256=xLF8pqYCPGMUrZEUJZzWwl3swIZypB9KoHzgZB77Egg
|
4495 |
orthoflow/workflow/scripts/filter_separate_ogs.pl |
sha256=JtbBvz8OAs9d8yqsWr4m3jykNDz5lhn0WEsHfpl2nb0
|
1203 |
orthoflow/workflow/scripts/generate_orthosnap_input.py |
sha256=sUP6aVKb8cf0C50saG7aiRv-oc6lxM4vIvWnruG11r4
|
1044 |
orthoflow/workflow/scripts/get_cds_seq.py |
sha256=hPIcpc3pco85xoz_HQFTOJyKzQmxNdj8VQPziIm4F1w
|
2596 |
orthoflow/workflow/scripts/matching_cds.py |
sha256=tFqLzrIJggVQateKsDvLXRFemfxKPPuYRxPWwSaQCT8
|
3157 |
orthoflow/workflow/scripts/orthofinder_report_components.py |
sha256=Wu5e-61hyazkhoI-7Q6dQyYYbOwvVp8c82PmBNqfJeU
|
2248 |
orthoflow/workflow/scripts/orthogroup_classification.py |
sha256=OoXKAyw6g1CMMIFEMh0W8FX2pKLAyhP56gcHSVa4TbE
|
2909 |
orthoflow/workflow/scripts/prepare_input.py |
sha256=xo8ZL4DNkmM9yMnYR6JOCGc6NsDYzYUBJUiyUnTWYWk
|
1159 |
orthoflow/workflow/scripts/rename_sequences.py |
sha256=UFB0BPYBCU-9qy2upAjmCiurg6Rz0I5htUIQ_vJP5BU
|
3294 |
orthoflow/workflow/scripts/render_tree.py |
sha256=SinNAp79aeC7_57g1BniUpke-QLO0_VVSlg2gstrRlQ
|
1251 |
orthoflow/workflow/scripts/report.py |
sha256=b8bzf2Tn5EJ5vfiVP1uIHMVfhP95ktEDQ7ss_Aoj42o
|
1082 |
orthoflow/workflow/scripts/summarize_information_content.py |
sha256=rOa8-P4NjzPD5nG_rMLv3o52GVRdVdpl5WZW6z16eyA
|
6445 |
orthoflow/workflow/scripts/taxon_only.py |
sha256=EXcKCqx9L8-6UxnVnmpw1yF1K4m9jxf28rUaRrVd5pI
|
1131 |
orthoflow-0.3.4.dist-info/LICENSE |
sha256=4CI1yMpZgWXkKlVev0M2vgvkDRaGOyKd-_FsKAoe8T0
|
11334 |
orthoflow-0.3.4.dist-info/METADATA |
sha256=5vE5PXPv-iTOrHb32b0_ds77oQMfkgV0SB0LMdiXzlE
|
10069 |
orthoflow-0.3.4.dist-info/WHEEL |
sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg
|
88 |
orthoflow-0.3.4.dist-info/entry_points.txt |
sha256=ncxzFWj7XTEpDhSxeUZ8_GtdZmYk3KwE94s5vjXomAE
|
48 |
orthoflow-0.3.4.dist-info/RECORD |
— |
— |