Reverse Dependencies of openslide-python

The following projects have a declared dependency on openslide-python:

• acutils-python — Data processing library implemented by Acuzle.
• clamlite — no summary
• compay-syntax — Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
• CytoBulk — Integrating transcriptional data to decipher the tumor microenvironment with the graph frequency domain model
• deepslide — A python toolbox to split whole slide image.
• dicom-wsi — Package for converting whole slide image files to dicom.
• DigiPathAI — Deep Learning toolbox for WSI (digital histopatology) analysis
• dlup — A package for digital pathology image analysis
• gandlf — PyTorch-based framework that handles segmentation/regression/classification using various DL architectures for medical imaging.
• glue-genes — Multidimensional data visualization for genomics
• hestcore — no summary
• HipoMap — Histopathological image analysis using Grad-CAM representation map
• histoclean — Histoclean (initial package setup)
• histolab — Python library for Digital Pathology Image Processing
• histoprep — Read and process histological slide images with python!
• hover-net — HoVer-Net implementation fork
• kaiko-eva — Evaluation Framework for oncology foundation models.
• large-image-source-openslide — An Openslide tilesource for large_image.
• liverquant — Quantitate liver histopathology in whole slide images
• monai — AI Toolkit for Healthcare Imaging
• monai-weekly — AI Toolkit for Healthcare Imaging
• napari-lazy-openslide — A plugin to lazily load multiscale whole-slide images with openslide and dask
• napari-wsi — A plugin to read whole-slide images within napari.
• ndpi-demerger — A package for extracting patches from NDPI images
• object-detection-fastai — Uses RetinaNet with FastAi
• panimg — Conversion of medical images to MHA and TIFF.
• panoptes-he — A multi-resolution CNN to predict cancer histopathologic features
• pathaia — procedures for wsi analysis
• pathml — Tools for computational pathology
• pathopatch — PathoPatch - Accelerating Artificial Intelligence Based Whole Slide Image Analysis with an Optimized Preprocessing Pipeline
• phas — PICSL Histology Annotation Server (PHAS)
• prismtoolbox — Toolbox for histopathology image analysis
• pyluna-pathology — Transformation functions and services for multi-modal oncology data
• pymana — no summary
• pyslide — Python whole slide image analysis toolkit
• qt-wsi-registration — Robust quad-tree based registration on whole slide images
• qubalab — A laboratory for exploring quantitative bioimage analysis in Python
• scematk — no summary
• SlideRunner — SlideRunner - A Tool for Massive Cell Annotations in Whole Slide Images
• SlideRunner_dataAccess — SlideRunner - data access package (slide access, database access)
• slideseg — segments whole slide images into usable image chips and masks for deep learning
• SPACEc — SPatial Analysis for CodEX data (SPACEc)
• stars-omics — A spatial transcriptomics analysis tool.
• tiatoolbox — Computational pathology toolbox developed by TIA Centre.
• tiledb-bioimg — Package supports all bio-imaging functionality provided by TileDB
• tissueloc — Localize the tissue regions in whole slide pathology images.
• TissUUmaps — TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images.
• viewmask — A Python package and CLI to view XML annotations and NumPy masks.
• WSI-handling — Convienent handling of annotated whole slide images
• wsi-tissue-tiler — It makes small patches / tiles of large whole slide images available in svs format.
• wsidata — Data structures and I/O functions for whole-slide images (WSIs).
• WSIdemerger — A package for extracting image patches from SVS files and performing color normalization
• wsidicomizer — Tool for reading WSI files from proprietary formats and optionally convert them to to DICOM
• wsinfer — Run patch-based classification on pathology whole slide images.
• wsipipe — A set of tools for processing pathology whole slide images for deep learning.
• wsiprocess — Whole Slide Image (WSI) Processing Library
• wsiPy — Python Toolkit to extract tiles from a Whole Slide Image
• wsiserver — Very simple wsi server
• zebrafishBlood — Zebrafish blood smear cell counter