Path |
Digest |
Size |
ontogpt/__init__.py |
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ontogpt/cli.py |
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65358 |
ontogpt/clients/__init__.py |
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ontogpt/clients/llm_client.py |
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4939 |
ontogpt/clients/pubmed_client.py |
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21074 |
ontogpt/clients/soup_client.py |
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ontogpt/clients/wikipedia_client.py |
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1156 |
ontogpt/conf/synonymizer-conf.yaml |
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ontogpt/converters/__init__.py |
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ontogpt/converters/ontology_converter.py |
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5340 |
ontogpt/engines/__init__.py |
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ontogpt/engines/embedding_similarity_engine.py |
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4542 |
ontogpt/engines/generic_engine.py |
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ontogpt/engines/halo_engine.py |
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ontogpt/engines/knowledge_engine.py |
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ontogpt/engines/mapping_engine.py |
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ontogpt/engines/pheno_engine.py |
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ontogpt/engines/reasoner_engine.py |
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ontogpt/engines/resolver.py |
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ontogpt/engines/spires_engine.py |
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31798 |
ontogpt/engines/synonym_engine.py |
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ontogpt/engines/topic_classifier_engine.py |
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ontogpt/evaluation/__init__.py |
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ontogpt/evaluation/ctd/__init__.py |
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ontogpt/evaluation/ctd/database/CDR_TestSet.BioC.xml.gz |
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425228 |
ontogpt/evaluation/ctd/database/CDR_TrainSet.BioC.xml.gz |
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409439 |
ontogpt/evaluation/ctd/database/synonyms.yaml |
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413985 |
ontogpt/evaluation/ctd/eval_ctd.py |
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11931 |
ontogpt/evaluation/ctd/eval_ctd_ner.py |
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15519 |
ontogpt/evaluation/drugmechdb/__init__.py |
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ontogpt/evaluation/drugmechdb/datamodel/drugmechdb.py |
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2121 |
ontogpt/evaluation/drugmechdb/datamodel/drugmechdb.yaml |
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2027 |
ontogpt/evaluation/drugmechdb/eval_drugmechdb.py |
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ontogpt/evaluation/evaluation_engine.py |
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3468 |
ontogpt/evaluation/go/eval_go.py |
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ontogpt/evaluation/hpoa/__init__.py |
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ontogpt/evaluation/hpoa/eval_hpoa.py |
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ontogpt/evaluation/ibd/10338374_nicotine.txt |
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1685 |
ontogpt/evaluation/ibd/Abstracts/10338374.txt |
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ontogpt/evaluation/ibd/Abstracts/17653185.txt |
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811 |
ontogpt/evaluation/ibd/Abstracts/18253950.txt |
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1516 |
ontogpt/evaluation/ibd/Abstracts/24104886.txt |
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1617 |
ontogpt/evaluation/ibd/Abstracts/28846760.txt |
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1968 |
ontogpt/evaluation/ibd/Abstracts/29285689.txt |
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1324 |
ontogpt/evaluation/ibd/Abstracts/29441064.txt |
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990 |
ontogpt/evaluation/ibd/Abstracts/31767987.txt |
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1539 |
ontogpt/evaluation/ibd/Abstracts/PMC4961083.txt |
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744 |
ontogpt/evaluation/ibd/Abstracts/PMC6386158.txt |
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1439 |
ontogpt/evaluation/ibd/Abstracts/PMC7003169.txt |
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1001 |
ontogpt/evaluation/ibd/PMC6386158_fig2_legend.txt~ |
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ontogpt/evaluation/ibd/run.sh |
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ontogpt/evaluation/ibd/run.sh~ |
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ontogpt/evaluation/ibd/text_data/10338374_smoking.txt |
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ontogpt/evaluation/ibd/text_data/PMC6386158_review.txt |
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ontogpt/evaluation/ibd/text_data/PMC6386158_review_fig2_legend.txt |
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ontogpt/evaluation/ibd/text_data/PMC6386158_review_fig2_legend.yaml |
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ontogpt/evaluation/kidney/test.txt |
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1529 |
ontogpt/evaluation/kidney/test2.txt |
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913 |
ontogpt/evaluation/kidney/test3.txt |
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3584 |
ontogpt/evaluation/maxo/__init__.py |
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ontogpt/evaluation/maxo/eval_maxo.py |
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13007 |
ontogpt/evaluation/maxo/test_cases/maxo_case_12958596.yaml |
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ontogpt/evaluation/maxo/test_cases/maxo_case_20301368.yaml |
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ontogpt/evaluation/maxo/test_cases/maxo_case_20301450.yaml |
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ontogpt/evaluation/maxo/test_cases/maxo_case_20301519.yaml |
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ontogpt/evaluation/maxo/test_cases/maxo_case_20301527.yaml |
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ontogpt/evaluation/maxo/test_cases/maxo_case_20301572.yaml |
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ontogpt/evaluation/maxo/test_cases/maxo_case_20301644.yaml |
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ontogpt/evaluation/maxo/test_cases/maxo_case_20301675.yaml |
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ontogpt/evaluation/maxo/test_cases/maxo_case_20301765.yaml |
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ontogpt/evaluation/maxo/test_cases/maxo_case_2063868.yaml |
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ontogpt/evaluation/maxo/test_cases/maxo_case_29478819.yaml |
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ontogpt/evaluation/maxo/test_cases/maxo_case_30488337.yaml |
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ontogpt/evaluation/maxo/test_cases/maxo_case_9543069.yaml |
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ontogpt/evaluation/resolver.py |
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ontogpt/io/__init__.py |
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ontogpt/io/csv_exporter.py |
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ontogpt/io/csv_wrapper.py |
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ontogpt/io/exporter.py |
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ontogpt/io/html_exporter.py |
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ontogpt/io/json_wrapper.py |
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ontogpt/io/markdown_exporter.py |
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ontogpt/io/owl_exporter.py |
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ontogpt/io/rdf_exporter.py |
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ontogpt/io/template_loader.py |
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ontogpt/io/utils.py |
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ontogpt/io/yaml_wrapper.py |
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ontogpt/ontex/__init__.py |
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ontogpt/ontex/extractor.py |
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ontogpt/prompts/__init__.py |
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— |
— |