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ont-bonito

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0.3.2a0 ont_bonito-0.3.2a0-py3-none-any.whl

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Project: ont-bonito
Version: 0.3.2a0
Filename: ont_bonito-0.3.2a0-py3-none-any.whl
Download: [link]
Size: 46136
MD5: 9054ab7742915de0414e70f95e29eb47
SHA256: c622655cea50f18508ce6830f4f4775bdf1008a83ca168d6ea1cb576ccfc32a1
Uploaded: 2020-12-02 15:46:10 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: ont-bonito
Version: 0.3.2a0
Author: Oxford Nanopore Technologies, Ltd
Author-Email: support[at]nanoporetech.com
Home-Page: https://github.com/nanoporetech/bonito
Requires-Dist: mappy (==2.17)
Requires-Dist: toml (==0.10.0)
Requires-Dist: tqdm (==4.31.1)
Requires-Dist: numpy (<=1.18.5)
Requires-Dist: torch (<=1.5,>=1.1.0)
Requires-Dist: optuna (==1.1.0)
Requires-Dist: parasail (==1.2)
Requires-Dist: seqdist (==0.0.1)
Requires-Dist: pandas (>=0.24.2)
Requires-Dist: requests (==2.22.0)
Requires-Dist: crf-beam (==0.0.1a0)
Requires-Dist: ont-fast5-api (==3.1.6)
Requires-Dist: fast-ctc-decode (==0.2.5)
Description-Content-Type: text/markdown
[Description omitted; length: 5322 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.34.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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bonito/aligner.py sha256=rOntEUzCUuUICeDKaCfHCr1p0Sd2SZUSxd93c_fz1PM 1098
bonito/fast5.py sha256=Uk4vtxKQd22AXZQJGta3Y7eLajMr6X0GtYBs0d3c8ho 5074
bonito/io.py sha256=-rzKxaUS4OlIokrmozzjBuJtMA8kF8ECGme0fdUdygU 10133
bonito/multiprocessing.py sha256=wD5zfQpfv3CgA040HonJgyOmQ-mJKrrqiWwtFnKRUY4 5978
bonito/nn.py sha256=4n2E-SJig1J2g2ivdqYnIan1syKxS_zq1kgkdf5rDOk 3402
bonito/training.py sha256=jBru26L8_kMUE87dvIq5_BraEqb751m1qvzGTeFHqZY 8266
bonito/util.py sha256=x_JhnHZ04IirnsxRk0-Z_AXBgkX_p44ERDzk-h2NwgA 11748
bonito/cli/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bonito/cli/basecaller.py sha256=KWAwl3ECwhtlD7DwxiqaWN-dp3YyrxvWt7g-JcV7xbY 3250
bonito/cli/convert.py sha256=k07hlNYsUSt9C3OpxeJ8X8KCI7nZBGANHfepg4fu8PE 5016
bonito/cli/download.py sha256=2HCLUPWpo_zB4cF-kjiZm2gKrjN_4icb3CIZCBwSWIE 3840
bonito/cli/evaluate.py sha256=70dbBZMR2imFKNbo2sjz_92YV20hWmRNVTaozWNtSEI 3434
bonito/cli/pair.py sha256=kiOnH7jk1ENFQkmEwTQfK3mNLGxUCeKI06GQKqJYSiE 8909
bonito/cli/train.py sha256=NWdOMlsoTnnM0vZEm4Nzfox94eYFzx12h4Y_3wmDC3g 4974
bonito/cli/tune.py sha256=h6S3i8CKSwGuhNLxWnGWZCA7ND2-ru9Y7NDc5jbuI_8 6075
bonito/cli/view.py sha256=5u9_PcqMSzSQ2Kekd1xPFs5tW51gLhBoYlHs-ZG2DDQ 567
bonito/crf/__init__.py sha256=q6mWgMcDXKbWZsgsN2HIBezFNoF4zpi-X1IxTLiqTjI 56
bonito/crf/basecall.py sha256=yav3W4Oe_qzKbd2mVVdnqu2sKgbfMF12Bkwctwza5fc 3648
bonito/crf/model.py sha256=GiZ791XCCb-LGEB2F9uCmYTRoMzOqBTjNtxKeV_JK2s 5617
bonito/ctc/__init__.py sha256=q6mWgMcDXKbWZsgsN2HIBezFNoF4zpi-X1IxTLiqTjI 56
bonito/ctc/basecall.py sha256=fVFZYbmL4FLYQVeGpnmW25m7-YMjmogXsH1sMO0BZOQ 2126
bonito/ctc/model.py sha256=Sjx9AX3iloqh3ljQ8Ed6NKOg7HGi9VR091gaaEME_6U 6363
bonito/data/README.md sha256=qUs0GG1-znJxUvojS0Y-Am_L3iHtY4S5PoypmsFHPiM 95
bonito/models/README.md sha256=SxBh6ULnr3FWWV5Uxq8Bmgu1p1Rbk7xT3C-RQDam7qQ 115
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bonito/models/configs/dna_r9.4.1@v2.toml sha256=Wx7Mn5CkBFlCm6FMJ0-YCavzVX2RAsCQ5ZJm1qayj1I 1289
bonito/models/configs/dna_r9.4.1@v3.toml sha256=bBHAfa9hozb8HJrshIKnvFwz8CA92XNFmNz1_CChvOA 290
ont_bonito-0.3.2a0.dist-info/LICENCE.txt sha256=qTm-Ub9kSIxpYJ29TAwUB-sks0EsxXxegyUGwTd--9s 14471
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ont_bonito-0.3.2a0.dist-info/entry_points.txt sha256=CSnkas-UDDbGV12Hwm6GdeoEs8JOb6Z8OJRw1JBnrFk 40
ont_bonito-0.3.2a0.dist-info/top_level.txt sha256=8kYVfjvcqk8yq2CS3vowtIpXbZfM0dcEMYKnDryYzHk 7
ont_bonito-0.3.2a0.dist-info/RECORD — —

top_level.txt

bonito

entry_points.txt

[console_scripts]
bonito = bonito:main