Reverse Dependencies of omnipath

The following projects have a declared dependency on omnipath:

• Augusta — Python package for inference of the gene regulatory network and the boolean network using RNA-Seq data.
• bengrn — benchmarking gene regulatory networks
• graphcompass — Spatial metrics for differential analyses of cell organization across conditions
• liana — LIANA+: a one-stop-shop framework for cell-cell communication
• monkeybread — Analyze cellular niches in single-cell spatial transcriptomics data
• networkcommons — Integrated framework for network inference and evaluation using prior knowledge and omics data
• nichecompass — End-to-end analysis of spatial multi-omics data
• NORDic — Network Oriented Repurposing of Drugs (NORDic): network identification / master regulator detection / drug effect simulator / drug repurposing
• scprel — Single-cell data preprocessing for multiple samples.
• squidpy — Spatial Single Cell Analysis in Python