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1.13.3 omicidx-1.13.3-py3-none-any.whl

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Project: omicidx
Version: 1.13.3
Filename: omicidx-1.13.3-py3-none-any.whl
Download: [link]
Size: 39867
MD5: 8455fe909457c3d85bd0837734cbc885
SHA256: 581d2f75cb2b2c0890f46ee548b17bad1ff1103a8ef0780fafd7b5e81de0eed5
Uploaded: 2024-11-15 22:40:49 +0000

dist-info

METADATA · WHEEL · RECORD · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: omicidx
Version: 1.13.3
Summary: The OmicIDX project collects, reprocesses, and then republishes metadata from multiple public genomics repositories. Included are the NCBI SRA, Biosample, and GEO databases. Publication is via the cloud data warehouse platform Bigquery, a set of performant search and retrieval APIs, and a set of json-format files for easy incorporation into other projects.
Author: Sean Davis
Author-Email: seandavi[at]gmail.com
Home-Page: https://github.com/omicidx/omicidx-parsers
Project-Url: Repository, https://github.com/omicidx/omicidx-parsers
License: MIT
Keywords: genomics,bioinformatics,open data,API
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Requires-Python: >=3.8
Requires-Dist: Click
Requires-Dist: aiohttp (<4.0.0,>=3.6.2)
Requires-Dist: biopython (<2.0,>=1.81)
Requires-Dist: httpx
Requires-Dist: orjson (<4.0.0,>=3.9.2)
Requires-Dist: pronto (<3.0.0,>=2.5.4)
Requires-Dist: pydantic (<3,>=2)
Requires-Dist: pytest (<9.0.0,>=8.3.3)
Requires-Dist: requests (<3.0,>=2.22)
Requires-Dist: tenacity (<9.0.0,>=8.0.1)
Requires-Dist: trio (<0.23.0,>=0.22.0)
Requires-Dist: universal-pathlib
Description-Content-Type: text/markdown
[No description]

WHEEL

Wheel-Version: 1.0
Generator: poetry-core 1.9.0
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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omicidx/__init__.py sha256=udDtR7F3yLDQVdEZUxXV_ro7GGZfxr7CkHDdm33I-rM 19
omicidx/biosample.py sha256=T2FuKpJyhr9I8ExfHsmDKhJ8kYvHKFKNZNRspfuXfjg 8430
omicidx/cli.py sha256=_tivZ_QXoP-bR5iQz2aqMK7D2RxP4e1XCxCEorbAGVI 1066
omicidx/geo/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
omicidx/geo/parser.py sha256=QMbdyaP1a8Tl2IlpPNl9lYXzUVNiRA6OZVwxCCKyRuM 19884
omicidx/geo/pydantic_models.py sha256=nIDb5mL_IfFM3hMGSUNHIvMHvxxvUX5sTcr4mqIfXeg 3771
omicidx/geo/webutils.py sha256=ucdpEoIc0L3PUOBeUQa-xZIlcKcYB4fdo44KpOJUAkQ 2080
omicidx/ontologies/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
omicidx/ontologies/utils.py sha256=xFxvVeVKcm-XMQ5B70N24PIZ941jdVnvaLgvFW5AFsk 1399
omicidx/schema_tools.py sha256=Plpo5jCqmsqQnjo4hShL9jQTo08pN7Wn_hnUEeAC6gE 4668
omicidx/scripts/__init__.py sha256=MsSFjiLMLJZ7QhUPpVBWKiyDnCzryquRyr329NoCACI 2
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omicidx/scripts/geo.py sha256=V1jpiWy_pYYUTeEz5QUrC5TLPJYVt2OXm4HBt5Ui1Jw 1718
omicidx/scripts/sra_entity_to_json.py sha256=pHtJx6QWFYeV3e-TlETwE8YGUKuWl4T_ALMVqGmYNx8 2001
omicidx/sra/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
omicidx/sra/ebiutils.py sha256=ZqdwLpIC9ELm-S-DPjb_-YpYaESLvjDbW7jerO-IeFk 1669
omicidx/sra/parser.py sha256=rwKuq4XCaTbTpU5a_P1C16GZ1hk8GhzAqmKfVnzNY48 21170
omicidx/sra/pydantic_models.py sha256=zOHr1xrZe3oys5H1Gt2GEewqGAkBOL2xsUicu_rY1qE 4377
omicidx/utils.py sha256=4lXvCUfOCr7rhi7UvPijdCBf8JjaV7Z--AK6kLiLdoc 2074
omicidx-1.13.3.dist-info/METADATA sha256=xa6FuHnaXiHpBdT2-yb6M0Y7g7UM_hQPNr2nnDwTjnE 1494
omicidx-1.13.3.dist-info/WHEEL sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg 88
omicidx-1.13.3.dist-info/entry_points.txt sha256=tE_GwZ_xya39EvetDx_l6JVK12ybmwyG5VRtwvL-nm4 56
omicidx-1.13.3.dist-info/RECORD — —

entry_points.txt

[console_scripts]
omicidx_tool = omicidx.scripts.geo:cli