Reverse Dependencies of ome-types

The following projects have a declared dependency on ome-types:

• aicsimageio — Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python
• bfio — Simple reading and writing classes for tiled tiffs using Bio-Formats.
• bioio — Image reading, metadata management, and image writing for Microscopy images in Python
• bioio-base — Typing, base classes, and more for BioIO projects.
• bioio-bioformats — A BioIO reader for reading bioformats formatted images.
• bioio-czi — A Bioio reader plugin for reading czi images.
• bioio-ome-tiff — A BioIO reader plugin for reading tiff files in the OME format.
• bioio-ome-tiled-tiff — A BioIO reader plugin for reading tiled ome.tiff images.
• bioio-types — Typing, base classes, and more for BioIO projects.
• BZMicroStitcher — A package to stitch microscope images.
• emobject — data abstraction and libraries for spatial omics
• jinxif — A python3-based image analysis package to achieve fully-documented and reproducible visualization and analysis of bio-medical microscopy images. This is a fork from Jennifer Eng`s mplex_image software library.
• microEye — A python toolkit for fluorescence microscopy that features hardware control, data analysis and vizualization for super-resolution single-molecule localization microscopy and single-partical tracking.
• mplexable — A python3-based image analysis package to achieve fully-documented and reproducible visualization and analysis of bio-medical microscopy images. This is a fork from Jennifer Eng`s mplex_image software library.
• multiplex-imaging-pipeline — A Python library for multiplex imaging analysis
• multiscale_spatial_image — Generate a multiscale, chunked, multi-dimensional spatial image data structure that can be serialized to OME-NGFF.
• napari-bioformats — Bioformats for napari, using pims
• nd2 — Yet another nd2 (Nikon NIS Elements) file reader
• ndbioimage — Bio image reading, metadata and some affine registration.
• nellie — Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
• nis2pyr — Utility for converting Nikon ND2 files to tiled pyramidal OME TIFF files.
• omero-arc — Plugin for omero-cli-transfer to export OMERO data to ARC repositories.
• omero-cli-transfer — A set of utilities for exporting a transfer packet from an OMERO server and importing it in a different server. Developed by the Research IT team at The Jackson Laboratory.
• OmeSliCC — Ome(ro) Slide Image Conversion and Compression pipeline
• opentile — Read tiles from wsi-TIFF files
• palom — Piecewise alignment for layers of mosaics
• paquo — library for interacting with QuPath
• scipion-fluo — Base pyworkflow plugin for Fluorescence image processing
• snouty-viewer — A plugin to visualize, deskew, and combine Snouty data.
• spfluo — SPFluo package
• towbintools — All the tools used by the Towbin Lab !
• valis-wsi — no summary
• wsidicomizer — Tool for reading WSI files from proprietary formats and optionally convert them to to DICOM
• wsireg — python package for registering multimodal whole slide microscopy images