Reverse Dependencies of olga

The following projects have a declared dependency on olga:

• immuneML — immuneML is a software platform for machine learning analysis of immune receptor repertoires.
• ligo — LIgO is a tool for simulation of adaptive immune receptors and repertoires.
• snetcr — Pairwise distance calculation and neighborhood enrichment analysis of TCR repertoires
• sonia — SONIA is a python 3.6 software developed to infer selection pressures on features of amino acid CDR3 sequences. The model can be used to calculate the probability of observing any sequence after selection and sample from the selected repertoire.
• sonnia — SoNNia is a Python 3 software developed to infer selection pressures on features of amino acid CDR3 sequences. SoNNia takes as input TCR CDR3 amino acid sequences with V and J genes. Its output is sequence-level selection factors which indicate how more or less represented this sequence would be in the selected pool as compared to the pre-selected pool. These in turn could be used to calculate the probability of observing any sequence after selection and sample from the selected repertoire.
• tcrdist3 — flexible distance measures for comparing T cell receptors