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NodeCoder

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1.0.0 NodeCoder-1.0.0-py3-none-any.whl

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Project: NodeCoder
Version: 1.0.0
Filename: NodeCoder-1.0.0-py3-none-any.whl
Download: [link]
Size: 51161
MD5: 10bfaf6576c7ababff9f9c1450c2eb3a
SHA256: 869292db1fe1c27b8bbf850890592ba4139652c9470628b7ef5546e1a77655d8
Uploaded: 2022-06-08 09:35:45 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: NodeCoder
Version: 1.0.0
Summary: A PyTorch implementation of NodeCoder pipeline, a Graph Convolutional Network (GCN) framework for protein residue characterization.
Author: Nasim Abdollahi
Author-Email: nsm.abdolahi[at]gmail.com
Home-Page: https://github.com/NasimAbdollahi/Nodecoder/
License: MIT
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: Implementation :: CPython
Classifier: Programming Language :: Python :: Implementation :: PyPy
Requires-Python: >=3.8.5
Requires-Dist: scipy (>=1.5.4)
Requires-Dist: numpy (>=1.19.2)
Requires-Dist: pandas (>=1.1.5)
Requires-Dist: matplotlib (>=3.3.3)
Requires-Dist: torch (>=0.4.1)
Requires-Dist: torchvision (==0.8.1)
Requires-Dist: torchaudio (==0.7.0)
Requires-Dist: torch-scatter (==2.0.5)
Requires-Dist: torch-sparse (==0.6.8)
Requires-Dist: torch-cluster (==1.5.8)
Requires-Dist: torch-spline-conv (==1.2.0)
Requires-Dist: torch-geometric (==1.6.3)
Requires-Dist: scikit-learn (>=0.23.2)
Requires-Dist: texttable (>=1.6.3)
Requires-Dist: biopython (>=1.77)
Requires-Dist: freesasa (==2.0.5.post2)
Requires-Dist: loguru (>=0.6.0)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 19383 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.37.1)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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NodeCoder/generate_graph_data.py sha256=7isncLoFe944UcfEcYPZksrADbD8LDfHjfp-lULaC5s 2653
NodeCoder/predict.py sha256=Wqva7PyViIGZxOHbWGfepcbRU5HRPCf3AK0kSdk8K8k 6860
NodeCoder/preprocess_raw_data.py sha256=DFvOqIJUHGBQH9QNCan-m0vWnGn6XlRHagiBw4cCbb0 2086
NodeCoder/train.py sha256=yremO-x3gr13sUgJOcwDATpDEt_3_eodiRuTdAOgrDg 7297
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NodeCoder/featurizer/protein_sequences.py sha256=Jw6Rna-tG7FtUKimGnAKAptUlMN7-x1WrWPOWZbnGmY 3654
NodeCoder/featurizer/protein_tasks.py sha256=UPQ4oCMVn0NJ0omHk3JYeU2pLX_pOchEBXHpBZbgS7s 6362
NodeCoder/gcn/NodeCoder.py sha256=c0ND7N1tVToYVPUzNVYAKD1Kf1H8lsP-g-Md7ugoI0c 4054
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NodeCoder-1.0.0.dist-info/LICENSE sha256=ANSCKZqIeVfOwJhaVU-qSrzt9VnDrkJAMRPyg2i7Tmk 1072
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NodeCoder-1.0.0.dist-info/RECORD — —

top_level.txt

NodeCoder

entry_points.txt

[console_scripts]
NodeCoder-cli = NodeCoder.main:main