nnunetv2-bm-custom

View on PyPIReverse Dependencies (0)

2.5.25 nnunetv2_bm_custom-2.5.25-py3-none-any.whl

Wheel Details

Project: nnunetv2-bm-custom
Version: 2.5.25
Filename: nnunetv2_bm_custom-2.5.25-py3-none-any.whl
Download: [link]
Size: 270075
MD5: 977a6eaa6802d534a6e639c189c4a9ae
SHA256: ba62d1441058f260b2164a6867d84587db20177b3df4f8d7a0c3d7016b273c5e
Uploaded: 2024-09-03 21:18:56 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: nnunetv2-bm-custom
Version: 2.5.25
Summary: nnU-Net is a framework for out-of-the box image segmentation.
Author: Helmholtz Imaging Applied Computer Vision Lab, Roman Fitzjalen BlueMind AI Inc
Author-Email: Fabian Isensee <f.isensee[at]dkfz-heidelberg.de>
Project-Url: homepage, https://github.com/MIC-DKFZ/nnUNet
Project-Url: repository, https://github.com/bluemindai/nnUNet
License: Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, and distribution as defined by Sections 1 through 9 of this document. "Licensor" shall mean the copyright owner or entity authorized by the copyright owner that is granting the License. "Legal Entity" shall mean the union of the acting entity and all other entities that control, are controlled by, or are under common control with that entity. For the purposes of this definition, "control" means (i) the power, direct or indirect, to cause the direction or management of such entity, whether by contract or otherwise, or (ii) ownership of fifty percent (50%) or more of the outstanding shares, or (iii) beneficial ownership of such entity. "You" (or "Your") shall mean an individual or Legal Entity exercising permissions granted by this License. "Source" form shall mean the preferred form for making modifications, including but not limited to software source code, documentation source, and configuration files. "Object" form shall mean any form resulting from mechanical transformation or translation of a Source form, including but not limited to compiled object code, generated documentation, and conversions to other media types. "Work" shall mean the work of authorship, whether in Source or Object form, made available under the License, as indicated by a copyright notice that is included in or attached to the work (an example is provided in the Appendix below). "Derivative Works" shall mean any work, whether in Source or Object form, that is based on (or derived from) the Work and for which the editorial revisions, annotations, elaborations, or other modifications represent, as a whole, an original work of authorship. For the purposes of this License, Derivative Works shall not include works that remain separable from, or merely link (or bind by name) to the interfaces of, the Work and Derivative Works thereof. "Contribution" shall mean any work of authorship, including the original version of the Work and any modifications or additions to that Work or Derivative Works thereof, that is intentionally submitted to Licensor for inclusion in the Work by the copyright owner or by an individual or Legal Entity authorized to submit on behalf of the copyright owner. For the purposes of this definition, "submitted" means any form of electronic, verbal, or written communication sent to the Licensor or its representatives, including but not limited to communication on electronic mailing lists, source code control systems, and issue tracking systems that are managed by, or on behalf of, the Licensor for the purpose of discussing and improving the Work, but excluding communication that is conspicuously marked or otherwise designated in writing by the copyright owner as "Not a Contribution." "Contributor" shall mean Licensor and any individual or Legal Entity on behalf of whom a Contribution has been received by Licensor and subsequently incorporated within the Work. 2. Grant of Copyright License. Subject to the terms and conditions of this License, each Contributor hereby grants to You a perpetual, worldwide, non-exclusive, no-charge, royalty-free, irrevocable copyright license to reproduce, prepare Derivative Works of, publicly display, publicly perform, sublicense, and distribute the Work and such Derivative Works in Source or Object form. 3. Grant of Patent License. Subject to the terms and conditions of this License, each Contributor hereby grants to You a perpetual, worldwide, non-exclusive, no-charge, royalty-free, irrevocable (except as stated in this section) patent license to make, have made, use, offer to sell, sell, import, and otherwise transfer the Work, where such license applies only to those patent claims licensable by such Contributor that are necessarily infringed by their Contribution(s) alone or by combination of their Contribution(s) with the Work to which such Contribution(s) was submitted. If You institute patent litigation against any entity (including a cross-claim or counterclaim in a lawsuit) alleging that the Work or a Contribution incorporated within the Work constitutes direct or contributory patent infringement, then any patent licenses granted to You under this License for that Work shall terminate as of the date such litigation is filed. 4. Redistribution. You may reproduce and distribute copies of the Work or Derivative Works thereof in any medium, with or without modifications, and in Source or Object form, provided that You meet the following conditions: (a) You must give any other recipients of the Work or Derivative Works a copy of this License; and (b) You must cause any modified files to carry prominent notices stating that You changed the files; and (c) You must retain, in the Source form of any Derivative Works that You distribute, all copyright, patent, trademark, and attribution notices from the Source form of the Work, excluding those notices that do not pertain to any part of the Derivative Works; and (d) If the Work includes a "NOTICE" text file as part of its distribution, then any Derivative Works that You distribute must include a readable copy of the attribution notices contained within such NOTICE file, excluding those notices that do not pertain to any part of the Derivative Works, in at least one of the following places: within a NOTICE text file distributed as part of the Derivative Works; within the Source form or documentation, if provided along with the Derivative Works; or, within a display generated by the Derivative Works, if and wherever such third-party notices normally appear. The contents of the NOTICE file are for informational purposes only and do not modify the License. You may add Your own attribution notices within Derivative Works that You distribute, alongside or as an addendum to the NOTICE text from the Work, provided that such additional attribution notices cannot be construed as modifying the License. You may add Your own copyright statement to Your modifications and may provide additional or different license terms and conditions for use, reproduction, or distribution of Your modifications, or for any such Derivative Works as a whole, provided Your use, reproduction, and distribution of the Work otherwise complies with the conditions stated in this License. 5. Submission of Contributions. Unless You explicitly state otherwise, any Contribution intentionally submitted for inclusion in the Work by You to the Licensor shall be under the terms and conditions of this License, without any additional terms or conditions. Notwithstanding the above, nothing herein shall supersede or modify the terms of any separate license agreement you may have executed with Licensor regarding such Contributions. 6. Trademarks. This License does not grant permission to use the trade names, trademarks, service marks, or product names of the Licensor, except as required for reasonable and customary use in describing the origin of the Work and reproducing the content of the NOTICE file. 7. Disclaimer of Warranty. Unless required by applicable law or agreed to in writing, Licensor provides the Work (and each Contributor provides its Contributions) on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied, including, without limitation, any warranties or conditions of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A PARTICULAR PURPOSE. You are solely responsible for determining the appropriateness of using or redistributing the Work and assume any risks associated with Your exercise of permissions under this License. 8. Limitation of Liability. In no event and under no legal theory, whether in tort (including negligence), contract, or otherwise, unless required by applicable law (such as deliberate and grossly negligent acts) or agreed to in writing, shall any Contributor be liable to You for damages, including any direct, indirect, special, incidental, or consequential damages of any character arising as a result of this License or out of the use or inability to use the Work (including but not limited to damages for loss of goodwill, work stoppage, computer failure or malfunction, or any and all other commercial damages or losses), even if such Contributor has been advised of the possibility of such damages. 9. Accepting Warranty or Additional Liability. While redistributing the Work or Derivative Works thereof, You may choose to offer, and charge a fee for, acceptance of support, warranty, indemnity, or other liability obligations and/or rights consistent with this License. However, in accepting such obligations, You may act only on Your own behalf and on Your sole responsibility, not on behalf of any other Contributor, and only if You agree to indemnify, defend, and hold each Contributor harmless for any liability incurred by, or claims asserted against, such Contributor by reason of your accepting any such warranty or additional liability. END OF TERMS AND CONDITIONS APPENDIX: How to apply the Apache License to your work. To apply the Apache License to your work, attach the following boilerplate notice, with the fields enclosed by brackets "[]" replaced with your own identifying information. (Don't include the brackets!) The text should be enclosed in the appropriate comment syntax for the file format. We also recommend that a file or class name and description of purpose be included on the same "printed page" as the copyright notice for easier identification within third-party archives. Copyright [2019] [Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany] Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.
Keywords: deep learning,image segmentation,semantic segmentation,medical image analysis,medical image segmentation,nnU-Net,nnunet
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Healthcare Industry
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
Classifier: Topic :: Scientific/Engineering :: Image Recognition
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Requires-Python: >=3.9
Requires-Dist: torch (>=2.1.2)
Requires-Dist: acvl-utils (<0.3,>=0.2)
Requires-Dist: dynamic-network-architectures (<0.4,>=0.3.1)
Requires-Dist: tqdm
Requires-Dist: dicom2nifti
Requires-Dist: scipy
Requires-Dist: batchgenerators (>=0.25)
Requires-Dist: numpy
Requires-Dist: scikit-learn
Requires-Dist: scikit-image (>=0.19.3)
Requires-Dist: SimpleITK (>=2.2.1)
Requires-Dist: pandas
Requires-Dist: graphviz
Requires-Dist: tifffile
Requires-Dist: requests
Requires-Dist: nibabel
Requires-Dist: matplotlib
Requires-Dist: seaborn
Requires-Dist: imagecodecs
Requires-Dist: yacs
Requires-Dist: batchgeneratorsv2 (>=0.2)
Requires-Dist: einops
Requires-Dist: black; extra == "dev"
Requires-Dist: ruff; extra == "dev"
Requires-Dist: pre-commit; extra == "dev"
Provides-Extra: dev
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 979 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (74.1.1)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
documentation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
documentation/competitions/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
documentation/competitions/Toothfairy2/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
documentation/competitions/Toothfairy2/inference_script_semseg_only_customInf2.py sha256=xUG5AzLPXMcxJfH9behWvGmOU4XSbOp_Dl9etQQT2r0 14872
nnunetv2/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/configuration.py sha256=xi9zsbwREbC8nD3-XI0aSBBHu7LBKLYBft6X2irxe-s 416
nnunetv2/paths.py sha256=uDGitS-iLo0z_svWnsR6DbFQtKpyJuZ5NnL0bpUk024 1865
nnunetv2/batch_running/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/batch_running/collect_results_custom_Decathlon.py sha256=rpK7XRMzzSZqxLxOU5uQXULR_i64XVM1AbwXEkeBO0w 5798
nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py sha256=1L8i8__shXi9AFHAS1sE0uNZl8BB1gGh6M5JNqMGD4U 708
nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py sha256=c45hoWFM6tM7rJrvoXOirKbc3Db_r1c7cxfqI3iopmk 4655
nnunetv2/batch_running/benchmarking/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py sha256=FKux606WbprJeJADrWtwVIl4Bh0QAX5gn5Ggzw64iXQ 2041
nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py sha256=JBgJ9cwO9tFsPGzBbOK2mlHJaVUctLionVtERVieuwU 3272
nnunetv2/batch_running/release_trainings/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/batch_running/release_trainings/nnunetv2_v1/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py sha256=CwQgaGOy52LoABHGsdhVfPwOTP1d58Y8MJtgLKSe27A 5662
nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py sha256=AuLIJhPkqoECleiwlAYFIxt_9se440-yvxJFiC9iJes 3833
nnunetv2/dataset_conversion/Dataset027_ACDC.py sha256=gzybu7D-M1XlUDaKivHQNABYhS6R3kTxPZ5ytYhkNrA 4545
nnunetv2/dataset_conversion/Dataset042_BraTS18.py sha256=pp3YwKVzfKP2En9cYINz2YVehssYYGr41-SCL47k3Fk 4820
nnunetv2/dataset_conversion/Dataset043_BraTS19.py sha256=rbMw6aqgec8P8j45j0tZtxKxWLlyWs-k8vLydR9qVYc 4820
nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py sha256=g0F5Kf64fvSDSIpAI7rDQ_CX9gv3azpiXq50AsrDnJE 4162
nnunetv2/dataset_conversion/Dataset114_MNMs.py sha256=0axA4VgydMrfG4jWiZxALwGwjGH-whTVCDR8sr0oB6U 9018
nnunetv2/dataset_conversion/Dataset115_EMIDEC.py sha256=QSCbRc4uwFduFyApxaQyh68xR11A7-S4yxSeDLd7AIk 2406
nnunetv2/dataset_conversion/Dataset119_ToothFairy2_All.py sha256=Tx9_fS9yRcKyW8tVb82UnDAPwKOm55C7DvB1-k0T5ww 6742
nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py sha256=o2nNvmzcuVw1BkuFxEbBzV3cfmiRsJZUjSy1Ul_DXQc 3430
nnunetv2/dataset_conversion/Dataset137_BraTS21.py sha256=zQeiEWTkWF2XSvtWQsYKCqM63to6ldEgqmboAMRA23M 3994
nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py sha256=EF9X9HgIpnxXfQOj0qG-Wg_YXzbWdl7ZZzVovEl2nc8 3742
nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py sha256=EHS2JC34HdY8ogfwiOCjdS4i7rJaUqv2rgn4CLZ-jlo 3555
nnunetv2/dataset_conversion/Dataset220_KiTS2023.py sha256=nrLZeVSJhzQ9p19G_2DUFQvoOHUULbJNiN1kCG7M4Gw 2080
nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py sha256=rbJGViM6SsAcCnOYB2wsjfQwgraeH6yxwczpI0dq_-U 3167
nnunetv2/dataset_conversion/Dataset223_AMOS2022postChallenge.py sha256=bBtUGmK1vkuUjg9IdCRWEOalt2ZZ32BViJDvsznBDRw 2653
nnunetv2/dataset_conversion/Dataset224_AbdomenAtlas1.0.py sha256=o33BqrNv1v8ckpypVeCuitrO0xGRIda5J9xz-jO-a4M 2382
nnunetv2/dataset_conversion/Dataset988_dummyDataset4.py sha256=tqL75R2QB9CRfKxM5tqH3QhQeYBSqUeY2MgjNci-_hE 1369
nnunetv2/dataset_conversion/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/dataset_conversion/convert_MSD_dataset.py sha256=RJu-3HT7GEAQ9Ua6hYe859Tol1fiKgACHhbHivHTfS8 6074
nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py sha256=oAfcDPbT44Pp-8CtMA56C0XOlXEayWnsBvhHaZuxzaY 2930
nnunetv2/dataset_conversion/generate_dataset_json.py sha256=ok_aPol_1uAQ2hdYw6ELvXCuV-Gh-bsIqOmx664d0ec 4045
nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py sha256=u9RgWyTZe6Sa_qw3ZHF4Mwu-1SRQvMUC-iaTJrjJ5-o 3250
nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py sha256=D9wumdg1sz2NsfiZKhPWBhmlh80vGzIw8f6i0OR48No 1468
nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py sha256=r496AYmuBpoRsKk_3I4Gz_cJEcxHiWgYwEPWPDuUhEk 1364
nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py sha256=QlrTV31YplkmDJu-9VWorhmmOLWQXe2x1vhjKirmVOU 1085
nnunetv2/dataset_conversion/datasets_for_integration_tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/ensembling/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/ensembling/ensemble.py sha256=Km6oJYenw5_7TCnUpnZZMYcaS5vHLS02S7HoNYAlExc 10027
nnunetv2/evaluation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/evaluation/accumulate_cv_results.py sha256=uvomryk1Zz4XQqpQrPg3H9nggkD8f_azZvy1fxYOXng 3273
nnunetv2/evaluation/evaluate_predictions.py sha256=feo61lhtxRsiS0NpLE9kyFPAwEDfWeqtjDS8dW5AIXk 12516
nnunetv2/evaluation/find_best_configuration.py sha256=-DLrEwULBJoE-1xWMdQJp9IQq8TzKCU7qUD2I8NsH5w 18962
nnunetv2/experiment_planning/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/experiment_planning/plan_and_preprocess_api.py sha256=nIcg_dSBnARGNce_I2d8klrVUXZ_tdIhiqSBr--BIZU 8566
nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py sha256=SV5ScuFPElxgjOj1NVk0c3iL3fdMUHVTx5qQHBVR42U 16599
nnunetv2/experiment_planning/verify_dataset_integrity.py sha256=GVsX-Am371-gXT407J13Y2HlsCRGYjZ37tmuzOnDBB0 12179
nnunetv2/experiment_planning/dataset_fingerprint/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py sha256=Il5qNjTuY-Y1bfE6CteVVZt1iPiJaT6DXfZSLMnZ4zI 11935
nnunetv2/experiment_planning/experiment_planners/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py sha256=-_T8Z63wJkPdRkRUvncVE90vMYUgJ-Ss1RK3la4-2c0 34746
nnunetv2/experiment_planning/experiment_planners/network_topology.py sha256=IUDJxrICc7vzBSpyRZlUVD2TeQzFJp4Nj7rdz70wqo8 3928
nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py sha256=rBGP98pkQ3Ui2wcuFrY2-w8wubWHAErQr_fb_Lk7R5s 14293
nnunetv2/experiment_planning/experiment_planners/resampling/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/experiment_planning/experiment_planners/resampling/resample_with_torch.py sha256=JdNg2vLaVsedU1qax-ul8Oj9UU3YSA4A-t-QKEb4FPM 8747
nnunetv2/experiment_planning/experiment_planners/residual_unets/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/experiment_planning/experiment_planners/residual_unets/residual_encoder_unet_planners.py sha256=xhN8n2CcPviYJSwicviDd1mhlr3JtlBQ_ig_qmloI_8 18395
nnunetv2/experiment_planning/plans_for_pretraining/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py sha256=TJKUJJRFqwVOBnDS8ohWpxWLR7U4c9sIg4LM1w_vkZE 4469
nnunetv2/imageio/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/imageio/base_reader_writer.py sha256=p4DaNukWAkXXI5fhzpH5jbyd8zvuxF3Ho-9JQaSfGMs 5646
nnunetv2/imageio/natural_image_reader_writer.py sha256=YfkUchRif4ilCNJBryiHRv248MpsM-TQ2r24rRn-XLY 3373
nnunetv2/imageio/nibabel_reader_writer.py sha256=legtPXVoKZoK9CziNTYtdVZvoq33nUVKhwQV5QBXF24 8780
nnunetv2/imageio/reader_writer_registry.py sha256=OyHhql0g1zqSaR9O8RH8o9xbDZW8j2Ue6R1iVP_etoI 3865
nnunetv2/imageio/simpleitk_reader_writer.py sha256=YtMfIGKU9o_jaADLif0QlqgsLULOqDVEn_kWnnFQw6o 5671
nnunetv2/imageio/tif_reader_writer.py sha256=YSOGL-Jh2syMoEV6yqGhBKVWD4q8l-FPjmR2tPN-KJ0 4773
nnunetv2/inference/JHU_inference.py sha256=Qu1e6xeURZwbD9iDkyd7eCC6uriuSNCa_2GQeayoj3s 8609
nnunetv2/inference/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/inference/data_iterators.py sha256=ZNCMfWPz9UN_pwTpTfmAck8_7fDf8emAKkjBy26cL1o 16214
nnunetv2/inference/examples.py sha256=rTCzhQNE6W1u4tfWoLfh1Nzq-td36FVWcgOLrPbvBRo 6488
nnunetv2/inference/export_prediction.py sha256=QG5wJrUt-InaKWzwaRDH4C0SD9SrkfKDvIHlpdGNkuw 8477
nnunetv2/inference/predict_from_raw_data.py sha256=bQnmZ6L2-Y7wLMsE9OWy36gL_r1Se02SM-Dv0Yj_KMQ 56789
nnunetv2/inference/sliding_window_prediction.py sha256=w2-gnMS48h0zft2TS14ZMQcu2B7Ad2avec_S19s0PrM 2895
nnunetv2/model_sharing/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/model_sharing/entry_points.py sha256=8gi8ftR7aj2uRXiKgVPIoI0VB5d9fc_tFSABQskxruA 3528
nnunetv2/model_sharing/model_download.py sha256=E8qwI0PMPHoc2sVHtw_n2dEkFsiR9tniKn1sejenjJo 1856
nnunetv2/model_sharing/model_export.py sha256=n7t1UKRPQJv5erg3Ww75JohS6cvPTo0a59GerU7lmkI 6830
nnunetv2/model_sharing/model_import.py sha256=R4VvUj4Kzcx5NRQtlNIs5LzIRj1sYfApn1iLETLy0fo 202
nnunetv2/postprocessing/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/postprocessing/remove_connected_components.py sha256=J0BDNKbCalzyz-OFQ8EuKQL2KtRiB6u22DpV3-EFDbk 20662
nnunetv2/preprocessing/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/preprocessing/cropping/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/preprocessing/cropping/cropping.py sha256=GqaKYwf50VSfGAcKtGGGX_OBMdnf_a58hVk48rlYH2Q 1274
nnunetv2/preprocessing/normalization/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/preprocessing/normalization/default_normalization_schemes.py sha256=2Eh-GRUjGU0Zt092uDFgUzPeAzKjuAGEmR3S6sJJNmQ 4145
nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py sha256=4ZW8H1zfz3I7GhHBXiU58V0RAYv88gp1jhi63KS3I_s 976
nnunetv2/preprocessing/preprocessors/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/preprocessing/preprocessors/default_preprocessor.py sha256=c5dCKDqkGKGKYmLYUERa84_XkzZ338RqiBesLqNC-_A 16318
nnunetv2/preprocessing/resampling/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/preprocessing/resampling/default_resampling.py sha256=CmFFRhzzoMzkU7gHqtSQk9ZS35AkCyQzCuzqriHr0Y8 10064
nnunetv2/preprocessing/resampling/resample_torch.py sha256=WF9ftCTFCm2yDtRYs72zcP_8GX9e8tWRighUOrdGEAM 7626
nnunetv2/preprocessing/resampling/utils.py sha256=f1zO3blKAolE9kB0r0HcIC0-y6VuXAjcfiAi4W7h0UE 713
nnunetv2/run/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/run/load_pretrained_weights.py sha256=sSkxC7INIgdIz0uTnUi1NI-eKXYagFqJxcQ0isdf9Yc 3345
nnunetv2/run/run_training.py sha256=ZQM6w0dSw9kYmnU9Jfp2l1eSIsT6rqvnOUP6lJXBqYk 14894
nnunetv2/tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/tests/integration_tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/tests/integration_tests/add_lowres_and_cascade.py sha256=xo0-ME5cvtw8PzvqEzq2ppiASOXVoNiIz88oR9_D00A 1550
nnunetv2/tests/integration_tests/cleanup_integration_test.py sha256=Xg2724mnphiD3PHwFHxS4RqrubeeVSVnFwzmo_8emmg 659
nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py sha256=rPv7p5qUMAPR1AsMFA8nkLF5SNysL0yzIqQ_JT2TYJ4 4244
nnunetv2/training/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/data_augmentation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/data_augmentation/compute_initial_patch_size.py sha256=Taik-7TbW9WkKKWWeTwL1oXTYOyLJL1L50lf2lk1Lp8 1157
nnunetv2/training/data_augmentation/custom_transforms/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py sha256=JG8FHFB0kvaGGuUFU1sT-h4hcvE-RAc2QhLfLI2K4uc 7310
nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py sha256=8vhbigkuT-4HscZ2PdRFZlkqGngKdM7CD36Hf7HUups 2601
nnunetv2/training/data_augmentation/custom_transforms/masking.py sha256=4KZI14da5EwX_7mvIAqw4dqyY8TylngHXbemgZokMDE 893
nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py sha256=0iUInb2wAAXFj9Kj7bihJpv3mqZ55AsMtX93QXzN2Jo 1329
nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py sha256=Y0Q_fnaYHuTu1ZZJq4ts7wm93WPajZzKzl2DavuCUy8 2455
nnunetv2/training/dataloading/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/dataloading/base_data_loader.py sha256=1Xvg7a4wcV2foyr-W0UPbDuWg9zPy4KvM8WZ83UkNxg 8314
nnunetv2/training/dataloading/data_loader_2d.py sha256=H229S9SMc7vUVwztGWRYtWoxURHXbqANx7I1pKb-UnQ 6781
nnunetv2/training/dataloading/data_loader_3d.py sha256=ptV_holu9DU6kkMvAM48TbUgBdHk9Rjfipq8_m4SF7k 4170
nnunetv2/training/dataloading/nnunet_dataset.py sha256=H32IV9CU5-2AnM0mSR1CtJYBTfmqB--we5ziEqEAa6c 6510
nnunetv2/training/dataloading/utils.py sha256=FfVrA1JDm0R-kj7YEQPja5gUGgKaRnkHxM89ucUWyIQ 3393
nnunetv2/training/logging/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/logging/nnunet_logger.py sha256=7XnavNAvqxn-k035wBwNQf6dQc2RDFBLkGHrxJ3ZY6I 4718
nnunetv2/training/loss/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/loss/compound_losses.py sha256=99RRZ0i2LCm78oHBmuG6HxCSGYIMAO5PyIzu5lHMsJI 6201
nnunetv2/training/loss/deep_supervision.py sha256=fs-Qx_K5z3Mdxu3dha1WLF6b5z8C4nJPLbikABF1Hj8 1398
nnunetv2/training/loss/dice.py sha256=c7SkiegOkQVbHD5FQp5IA6JPZTyrZn9ROq_1xTZTZQo 6693
nnunetv2/training/loss/robust_ce_loss.py sha256=0PdMlIRvA9GWWMAcQpJgyhjA170vzFnathyC2NWIrKo 1153
nnunetv2/training/lr_scheduler/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/lr_scheduler/polylr.py sha256=tY6y2DwPPGxyUD19ZYcOiIk3Mh47L8hiZukiNtIy6SM 803
nnunetv2/training/nnUNetTrainer/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py sha256=3Cu5ZXAzlyCU2_SiY1SY70V4OG0O1rJpBlSMqnxXIGI 73197
nnunetv2/training/nnUNetTrainer/variants/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/nnUNetTrainer/variants/benchmarking/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py sha256=ELKg3AirulQp6Pf1nzNsjnsGFBgwiZ0JRMrpw8LNMRA 3018
nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py sha256=UCD6GYLohbQowa7qjc3YF-nICj6R8PgIKY4aRApLToQ 2566
nnunetv2/training/nnUNetTrainer/variants/custom/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/nnUNetTrainer/variants/custom/customTrainersMOSAIC.py sha256=6sZlizpL5MoEfknT9QyVB4u9mbto7OQ_8WsDpFI9E-o 6330
nnunetv2/training/nnUNetTrainer/variants/data_augmentation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py sha256=V6rxncZIDl8uQV6P0FGLNuogXEQaDAtnRNimQrQBhkc 38347
nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py sha256=m5QgwimDFjduyAQxZTrKalNdV_usvLKPSkkyqBi5cEw 13479
nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py sha256=9dxr8OvaVkcHNB3hvIFuO3kkvZu7qYZ2dd0uZ0rr1C4 1637
nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py sha256=1Yg_HcL18BwUYs6PcTrMf0GDy4t8quZQHQHTVZnMLgs 9366
nnunetv2/training/nnUNetTrainer/variants/loss/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py sha256=ltmFjKVbMldVP-gnF8cc6LlKRTAHA464hI69W6rfGbQ 1690
nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py sha256=Gjr-4uhVhBSAhi0dfIC2hgPttHocnumOba5fdZh9Umw 17187
nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py sha256=gPO5aEQ5Fl9OWzNWzlVN7c-yo8LMzNHiAfZGDzApzXg 3473
nnunetv2/training/nnUNetTrainer/variants/lr_schedule/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py sha256=pg2zBiJgoL36qzbi9m7e0NqrB2a0o4TAqX2YMP4AfFI 517
nnunetv2/training/nnUNetTrainer/variants/network_architecture/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py sha256=eo_dVEthkhRGdJYUB9eZ64D6oe_lXfDztXb69P11Xhc 1710
nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py sha256=PFL2RsOabwyANuWdhYmvxUedEGx3oVoBFbrc91SofNg 501
nnunetv2/training/nnUNetTrainer/variants/optimizer/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py sha256=bWx-zM4hyjN1d1KyGjY3Is1oCT_bWqHUCsR6N2eGQLQ 2882
nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py sha256=u1YGo6WwePQuaJFWOByH2M5fCiShj4JzOO6AfuMLj5o 3259
nnunetv2/training/nnUNetTrainer/variants/sampling/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py sha256=wdkyh74TGky8D4iwzpoa7MScZEiakg1qETe_egiChYk 5088
nnunetv2/training/nnUNetTrainer/variants/training_length/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py sha256=pyC-8dA_ERfcf1xABMcGdCNw7-_ha_AUCgSU5YHuSJk 5423
nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py sha256=MaHhi8KhkSPM0lBmWX3PPV-n9w0SMv016ih4LvsjeyM 6992
nnunetv2/utilities/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/utilities/collate_outputs.py sha256=9zY7zhsB5L5jtbWsIVUJ7mfV35hjrgrEM78tRXMijaA 906
nnunetv2/utilities/crossval_split.py sha256=L82eEkQHyXgtFV_nJU-iweqt9iBNuS00Ye0ZPw3vVyg 619
nnunetv2/utilities/dataset_name_id_conversion.py sha256=LvYvAsMCfpU3D4HdHAoLC0UVtR77BfDRpotu6zZ-kf8 3925
nnunetv2/utilities/ddp_allgather.py sha256=sjwLfKwiPaKF3oBGGHMZbi5gwODdzndvhYzEsHdwWa8 1748
nnunetv2/utilities/default_n_proc_DA.py sha256=hszKjns9xp4AyIcqJG9TvVIqwVQlaoCqbMdAGmwV4ww 1854
nnunetv2/utilities/file_path_utilities.py sha256=wdNQHqagWxfP3hZm5xTNDbvOx3EM6sQ0MEdMxmYXD0I 5545
nnunetv2/utilities/find_class_by_name.py sha256=B3Xu99_TdEEjfg2T48a0UYXx5jA_DCNzZHkqX4ipLfI 869
nnunetv2/utilities/get_network_from_plans.py sha256=Lq2T595kbZUI0ycCGGZ0lf4wX2npuJYCoYIiCgXNjvw 1869
nnunetv2/utilities/helpers.py sha256=tZqbcaMouasJ_P0ttJA7YUUTC-bS2N7Vzvo8L7wF6Ds 543
nnunetv2/utilities/json_export.py sha256=iGt5BY4Wbn9JkD8Z3u4P-PfqrLu_NUzhLtjvEDmfZjk 2420
nnunetv2/utilities/network_initialization.py sha256=Mqk4YQ_-kn5uyUNPqHYEKxVYfGyk2Em6CX49EbMuaME 509
nnunetv2/utilities/overlay_plots.py sha256=c47Sq5IZS1SDjCQ6ARaJTON5ql7SEqaYF68V92TvnBU 11953
nnunetv2/utilities/utils.py sha256=zyAsbjwbBApjvJHGlPxYmQ7hZdaBq8Lpd_YJCkgFojU 3412
nnunetv2/utilities/label_handling/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/utilities/label_handling/label_handling.py sha256=9uXhIl2tDdNqWFsMsVWr3VPvkG4H9eQyWLi_NA8PiKs 14925
nnunetv2/utilities/plans_handling/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nnunetv2/utilities/plans_handling/plans_handler.py sha256=ewPcRVzyRWZoh1L35aRmFkPm7Ixfk_ph_Lo6nR16ib4 15166
nnunetv2_bm_custom-2.5.25.dist-info/LICENSE sha256=fany3e2oNqiR9TcQRTAjCnsjGPYepMV7BePdRqmuJ_0 11427
nnunetv2_bm_custom-2.5.25.dist-info/METADATA sha256=2IuwycDLfMmBbDaMfmwuI0BCRxXNxbCyDWnGk-a--d8 15904
nnunetv2_bm_custom-2.5.25.dist-info/WHEEL sha256=uCRv0ZEik_232NlR4YDw4Pv3Ajt5bKvMH13NUU7hFuI 91
nnunetv2_bm_custom-2.5.25.dist-info/entry_points.txt sha256=lqUDaGZPYtqMdIKwDMHLwG5bLoHOY1iKmMHxy2C_O5w 2244
nnunetv2_bm_custom-2.5.25.dist-info/top_level.txt sha256=mrScN5h4fCaMcNGXaliQp2FWFce7cIWoDjRGMGJoNUM 50
nnunetv2_bm_custom-2.5.25.dist-info/RECORD

top_level.txt

configs
dist
documentation
nnunetv2
scripts
vm-yc

entry_points.txt

nnUNetv2_accumulate_crossval_results = nnunetv2.evaluation.find_best_configuration:accumulate_crossval_results_entry_point
nnUNetv2_apply_postprocessing = nnunetv2.postprocessing.remove_connected_components:entry_point_apply_postprocessing
nnUNetv2_convert_MSD_dataset = nnunetv2.dataset_conversion.convert_MSD_dataset:entry_point
nnUNetv2_convert_old_nnUNet_dataset = nnunetv2.dataset_conversion.convert_raw_dataset_from_old_nnunet_format:convert_entry_point
nnUNetv2_determine_postprocessing = nnunetv2.postprocessing.remove_connected_components:entry_point_determine_postprocessing_folder
nnUNetv2_download_pretrained_model_by_url = nnunetv2.model_sharing.entry_points:download_by_url
nnUNetv2_ensemble = nnunetv2.ensembling.ensemble:entry_point_ensemble_folders
nnUNetv2_evaluate_folder = nnunetv2.evaluation.evaluate_predictions:evaluate_folder_entry_point
nnUNetv2_evaluate_simple = nnunetv2.evaluation.evaluate_predictions:evaluate_simple_entry_point
nnUNetv2_export_model_to_zip = nnunetv2.model_sharing.entry_points:export_pretrained_model_entry
nnUNetv2_extract_fingerprint = nnunetv2.experiment_planning.plan_and_preprocess_entrypoints:extract_fingerprint_entry
nnUNetv2_find_best_configuration = nnunetv2.evaluation.find_best_configuration:find_best_configuration_entry_point
nnUNetv2_install_pretrained_model_from_zip = nnunetv2.model_sharing.entry_points:install_from_zip_entry_point
nnUNetv2_move_plans_between_datasets = nnunetv2.experiment_planning.plans_for_pretraining.move_plans_between_datasets:entry_point_move_plans_between_datasets
nnUNetv2_plan_and_preprocess = nnunetv2.experiment_planning.plan_and_preprocess_entrypoints:plan_and_preprocess_entry
nnUNetv2_plan_experiment = nnunetv2.experiment_planning.plan_and_preprocess_entrypoints:plan_experiment_entry
nnUNetv2_plot_overlay_pngs = nnunetv2.utilities.overlay_plots:entry_point_generate_overlay
nnUNetv2_predict = nnunetv2.inference.predict_from_raw_data:predict_entry_point
nnUNetv2_predict_from_modelfolder = nnunetv2.inference.predict_from_raw_data:predict_entry_point_modelfolder
nnUNetv2_preprocess = nnunetv2.experiment_planning.plan_and_preprocess_entrypoints:preprocess_entry
nnUNetv2_train = nnunetv2.run.run_training:run_training_entry