Wheelodex » Projects » nextstrain-augur » nextstrain_augur-26.1.0-py3-none-any.whl

nextstrain-augur

View on PyPI — Reverse Dependencies (1)

26.1.0 nextstrain_augur-26.1.0-py3-none-any.whl

Wheel Details

Project: nextstrain-augur
Version: 26.1.0
Filename: nextstrain_augur-26.1.0-py3-none-any.whl
Download: [link]
Size: 341259
MD5: 5923b83f735a69cb2924b261fc986d48
SHA256: 6a9d1231c9c69af1310011bdb7639afaa4ba78ffeab5bcb2cbc9a0eff036da0e
Uploaded: 2024-11-12 23:25:48 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: nextstrain-augur
Version: 26.1.0
Summary: A bioinformatics toolkit for phylogenetic analysis
Author: Nextstrain developers
Author-Email: trevor[at]bedford.io, richard.neher[at]unibas.ch
Home-Page: https://github.com/nextstrain/augur
Project-Url: Bug Reports, https://github.com/nextstrain/augur/issues
Project-Url: Change Log, https://github.com/nextstrain/augur/blob/-/CHANGES.md#next
Project-Url: Source, https://github.com/nextstrain/augur
Keywords: nextstrain,molecular epidemiology
Classifier: Development Status :: 5 - Production/Stable
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: GNU Affero General Public License v3
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Requires-Python: >=3.8
Requires-Dist: bcbio-gff (==0.7.*,>=0.7.1)
Requires-Dist: biopython (==1.*,>=1.80)
Requires-Dist: cvxopt (==1.*,>=1.1.9)
Requires-Dist: isodate (==0.6.*)
Requires-Dist: jsonschema (==3.*,>=3.0.0)
Requires-Dist: networkx (<4,>=2.5)
Requires-Dist: numpy (==1.*)
Requires-Dist: packaging (>=19.2)
Requires-Dist: pandas (==1.*,>=1.0.0)
Requires-Dist: phylo-treetime (<0.12,>=0.11.2)
Requires-Dist: pyfastx (<3.0,>=1.0.0)
Requires-Dist: python-calamine (>=0.2.0)
Requires-Dist: scipy (==1.*)
Requires-Dist: xopen[zstd] (<3,>=1.7.0)
Requires-Dist: importlib-resources (>=5.3.0); python_version < "3.11"
Requires-Dist: cram (>=0.7); extra == "dev"
Requires-Dist: deepdiff (<8.0.0,>=4.3.2); extra == "dev"
Requires-Dist: flake8; extra == "dev"
Requires-Dist: freezegun (>=0.3.15); extra == "dev"
Requires-Dist: mypy; extra == "dev"
Requires-Dist: nextstrain-sphinx-theme (>=2022.5); extra == "dev"
Requires-Dist: pandas-stubs (==1.*,>=1.0.0); extra == "dev"
Requires-Dist: pylint (>=1.7.6); extra == "dev"
Requires-Dist: pytest (>=5.4.1); extra == "dev"
Requires-Dist: pytest-cov (>=2.8.1); extra == "dev"
Requires-Dist: pytest-mock (>=2.0.0); extra == "dev"
Requires-Dist: recommonmark (>=0.5.0); extra == "dev"
Requires-Dist: Sphinx (>=2.0.1); extra == "dev"
Requires-Dist: sphinx-autobuild (>=2021.3.14); extra == "dev"
Requires-Dist: sphinx-argparse (!=0.5.0,>=0.2.5); extra == "dev"
Requires-Dist: sphinx-markdown-tables (>=0.0.9); extra == "dev"
Requires-Dist: sphinx-rtd-theme (>=0.4.3); extra == "dev"
Requires-Dist: sphinx-autodoc-typehints (>=1.21.4); extra == "dev"
Requires-Dist: sphinx-tabs; extra == "dev"
Requires-Dist: types-jsonschema (==3.*,>=3.0.0); extra == "dev"
Requires-Dist: types-setuptools; extra == "dev"
Requires-Dist: wheel (>=0.32.3); extra == "dev"
Requires-Dist: ipdb (>=0.10.1); extra == "dev"
Provides-Extra: dev
Description-Content-Type: text/markdown
License-File: LICENSE.nextstrain-cli
License-File: LICENSE.txt
[Description omitted; length: 3245 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.4.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
augur/__init__.py sha256=wJyd-cOrLG2lgj5AfcOXZlXQ5sCBxD_P6IoP3jM4WnE 4420
augur/__main__.py sha256=CkAsLovx6nSvAIjBX6317sTNwIzhGY3cfnB31eAuIQc 1211
augur/__version__.py sha256=pav2M1eDlUzwwitNuOKbwHr0h14xR2zjMNwiicgtUFM 538
augur/align.py sha256=Q-kSDUs-5mCrRjpIJoa1WaHomBhe9ZA9gMjIZ8Ac9P4 19902
augur/ancestral.py sha256=hexRxCx1kGzjuTkEjgc1QI-Sjtdiwn0lyJCVcuWEHk0 23905
augur/argparse_.py sha256=5EOQ1D-yWymcOfgjllYvl5inWs_t6Nc35V6LMKLdcJk 4881
augur/clades.py sha256=AxTyaAxPYf3fGnh3LbRLLfw39xtvqboMzc7CHS8OCNc 16445
augur/debug.py sha256=KxGXlP549Rm19TJsV5hb3lMcqgVMyTqQT4rK_My3Ot0 137
augur/distance.py sha256=FaETES4NBcAgPIx3tegnq8WTlSWtkyKzHyfGL9jNoME 32003
augur/errors.py sha256=RS8L-pk6NzWnYt4UNJMKHQVyES5CLtAgLYwNqIvEQQM 38
augur/export.py sha256=ZuZItHaXZ-179rSaR4UPoLFUdLK-g9Lb1XhwFL8LZW0 663
augur/export_v1.py sha256=-0poUfKDMa24uZmSLUj5oGCKuGRtbgDdc34Fnciz1qM 16927
augur/export_v2.py sha256=h5qNwB7Pn9CcrO9O9gQg5LBc0JM05shWw2SaaX2S7d0 60845
augur/frequencies.py sha256=0ZeVW-rgWbMD4VjaoAfzEkHsbmCQYNYnSeRzx1pTlWA 14374
augur/frequency_estimators.py sha256=D1R_abCm9mycWQrsyIZwGf7Ko-KpTTTUBh63LcncuQ0 50593
augur/index.py sha256=N5-vaz1hSOHHlX79X4U8dQR-zToepC64CgFZMYzSpHM 7778
augur/lbi.py sha256=DYZW4ua9kpJj9x7eBwe0c_Ogq9b6bnUifweLLsJO7uw 5373
augur/mask.py sha256=fTLR0hTdDGqjAMLkOTw_E-2r_ZsDC4Wj5jgbqFX4Yr4 9751
augur/merge.py sha256=t76Ht2bF95eDZ9D3oSMgwQI7vhve4-vkrf8KYBiIQ20 21127
augur/parse.py sha256=-1nsP5zvKtSO99750L5V34I-aSCBJV9IQpx_R4nVCEU 7931
augur/read_file.py sha256=kFTyXTwVa7VN7zh2GfLw0ecw2AQSckhPjR1C2AZp8KY 3090
augur/reconstruct_sequences.py sha256=w0yg2Kg2pyGaFrpJ2tauN7wWyXttFgpZXPArwkdbY7k 4076
augur/refine.py sha256=jC9UT2iiCTWCPmS3FpNGkKj13zJndjM_OuzFNrcA77I 19468
augur/sequence_traits.py sha256=w8nQx8wQrSTDRuuoT0uJiTR4X_vzV-kthn6hI2VNcao 13399
augur/titer_model.py sha256=HnKd52HP2WAWnt_o54A7l0ah8BKCp69mVNtGCJDdQ8g 48532
augur/titers.py sha256=WeBoFN5sB15NRNUE5TnVwPQiK5mzvEc81JM49Utjg4c 6395
augur/traits.py sha256=wRafNtxhqeuCDENqOII_YMweD9pWKR9BD-doYkJwsds 10593
augur/translate.py sha256=0huh4f5i9-sztwiSURQpn8umUDB5LKuGF8-Ke7GI824 21729
augur/tree.py sha256=pKpgdYiDXzCy-l6xrzm1AARyyRPW8m4KnRjXA5ZmGok 21456
augur/types.py sha256=bd4UkdAOnhdn2r8XGs53e_C26BX05sagOb5pfmaRGjw 2054
augur/utils.py sha256=aE2jfS9O2BOSu-7cp1fb2Rx0RrRrbLpFzStCrFUqs2w 30874
augur/validate.py sha256=WxdgYZCjjmaxTginHGbnwljUmN2wIR108JhvAINJwOs 18092
augur/validate_export.py sha256=oMtugMaoakbtVksSmWhR1Pz2mK4iIQ33O-onV9iXstU 13252
augur/version.py sha256=314DmNY_bf9pBoJmd3z2WsfJdGeACyCxwR2UW9dmWFQ 240
augur/write_file.py sha256=3yCkYc_UuiOD8NG-9Cx1bZML1Aj_FZsD7F043KX2PMI 2323
augur/curate/__init__.py sha256=i_1seZJ_fkVTI8Or3KB4yen-KokpekMB08-eNRh_Txo 11154
augur/curate/abbreviate_authors.py sha256=kglau4DueUMegLbs-HFxQ2EEyT__OchcPkL2u5WI8Nc 2532
augur/curate/apply_geolocation_rules.py sha256=SuykwTj_n9Sx_5qEgycW7mKAs00xHI3EO-CugmxSYK8 9101
augur/curate/apply_record_annotations.py sha256=0cHhXVaSWnM_lyx9QS6a4GHqOS795vmgQZXEw9Q6dDs 2311
augur/curate/format_dates.py sha256=SBtin4a84R58O3LEU-lZ1Why1YWpu5FH9rgMqVRBBnY 9011
augur/curate/format_dates_directives.py sha256=AQmMke1cV8C_zK3_WRPTrWjFeZ79HMsaNmZj2sU92jc 1058
augur/curate/normalize_strings.py sha256=Zy8Oyl8zsWtAUSxH-cViQytP1xkYxysr3St1qehRqXA 1533
augur/curate/parse_genbank_location.py sha256=Hz40LyKy34B84pO5AfDCWU_YMuaPa92lnKx_rZnb7BM 2095
augur/curate/passthru.py sha256=XvOeRwPk1Mvwi6R0F0p_rWY5jTQhqh8o9jAsNQse43Q 356
augur/curate/rename.py sha256=QPKzWdtHW9ej-ju-rxfUmxWnopYXYDi7Yt0Wd_2IMa8 4134
augur/curate/titlecase.py sha256=bWHa6xTeKBbUjvUpt1XmR_a1tVOPdj0mfYnw5r6u1wg 4635
augur/curate/transform_strain_name.py sha256=kagOCYw0YGhbqkvHvy9HHCCig0wqH9D0IYZKXzG_A54 2243
augur/data/__init__.py sha256=5so_vdrEtmh72-CiwMOUX5hD7esSPKJkFFlrdv6OcsI 1270
augur/data/colors.tsv sha256=wNrpVq2Xn2ony80wN36XDM8FHKJFI6S5L-Lb_sZP2OU 440
augur/data/lat_longs.tsv sha256=Sh7vgxzw7DK1xPTO6a8lw5OnJ_b3ubpIJfN-_a4Puew 135684
augur/data/schema-annotations.json sha256=jUP3bc5QzjRefWQNVCnCO7Kos31CbZ0dzk52Uvuy7gQ 3452
augur/data/schema-auspice-config-v2.json sha256=yR2p6UFSGrRldPH4pdy-ZyIUPf__B0DTGzjZjxNoQwQ 13442
augur/data/schema-export-root-sequence.json sha256=iiLHO5WI8DnARPElGHgoVE0TxihQRFsIEvnrDEKxoDI 1397
augur/data/schema-export-v1-meta.json sha256=CI1KGUWaCGjYaOzpYCfLBmkyvIfzWq9IMRW6dp-E1vE 11273
augur/data/schema-export-v1-tree.json sha256=OyO6iUuFGc_6rLGHTLnBlCFvHJCKJlyHDK3YzngDa5k 6536
augur/data/schema-export-v2.json sha256=xYE2Yg9pV_hDp6x5Ssq1j-Pm4eI_jiz6cH-NLOaf5vY 17422
augur/data/schema-frequencies.json sha256=bZr7U1-VR_yktOGvHvbeR0tBRo8AMIHrnxv9OaA_LDs 4295
augur/data/schema-measurements-collection-config.json sha256=if-kXS0YbBDmJv8d_36HRKyEhgHZqESXmWw20RXgGB4 5732
augur/data/schema-measurements.json sha256=Yuke7gg-uOAQi1UwRGJtSY39uN-kgElg3fXk3OtClW4 9567
augur/data/schema-tip-frequencies.json sha256=mO1YzzRpHqYUQTr2p_uhFtpHu56Z7E9H1-9LbOLQhfM 1720
augur/dates/__init__.py sha256=sO400jHgiUQElm1AZsiwASkJ7s6gapvBUs_0ZrKePag 5288
augur/dates/ambiguous_date.py sha256=fx3saBRjzi8UPoHy4YPsRD_6sPh3qnSbU-xZZkJAyTA 6616
augur/dates/errors.py sha256=-Zjj0eVvKvyyZJGx5FYCgA7CWpimTlFNcLqj9p8xcFk 550
augur/filter/__init__.py sha256=kE8YBi37yPUv5CCyhEQHW1O9b4ruQ6DszOecbz9N3u4 10927
augur/filter/_run.py sha256=gvKNTaw5NT_k5rjmlGu23WdI3U5SJ3jD0Iw8zDRPGVM 23864
augur/filter/constants.py sha256=R3WzlbGpDZJc0GzHV2ea35N7Vuoc52VTMQLK3vJpmpE 293
augur/filter/include_exclude_rules.py sha256=kFJ-boUcaUqe2Zc1oLNnSBFD8-PmYwx9J6H6K-_VqIA 36784
augur/filter/io.py sha256=Af80PER6liqt9wCN2SOnz16HR2Fav60S-kTywphZ8Jc 6402
augur/filter/subsample.py sha256=sNIA7okfEf9Lj68VWvptmIRg_2DEG-qOC3dL1HQk9Hg 25072
augur/filter/validate_arguments.py sha256=Sts22ja4EcIaotWlqyALjzIC5Nlc9EVDL277DNT0tuc 2777
augur/filter/weights_file.py sha256=x4kGIowzB7I_iEOrSOVrzoC4XALeNznykYfPLjqLcqA 2801
augur/import_/__init__.py sha256=1HQqZi1pATNBG1AqGdhb-vO-eaxEA3M4QI_88fjrcDw 576
augur/import_/beast.py sha256=oxBfFh4SBhafHnolYp65YgDTvqadKpjzlMQR59ZZyis 26705
augur/io/__init__.py sha256=BYaML1JEfoIUXVVinL5CABYbcY9Gdbe7_90hiicIW2U 434
augur/io/file.py sha256=WYcRI7JxbzWsK5fbPr9zlSUz1yeuCWOM5dHWLazgIUk 2232
augur/io/json.py sha256=xV3LiBPOGAn8OVx35oWWOkgytpa1u24ZjGFSISEDTcw 11877
augur/io/metadata.py sha256=PDegGNkrQG0JLJiiqTGHQod_VPb43WEy3t3dMbniuk8 27380
augur/io/print.py sha256=SoA-uqTbV3i_neb3jnaPK6J5V4lLvs7TeRJrtKzYunU 628
augur/io/sequences.py sha256=q3YRtx2AmwUirlois08TdFjhxw0J-Y_b8ENSqvUqRs8 3895
augur/io/shell_command_runner.py sha256=Sz1VnYhG695nEcVdXejYQ_KPH1B5gDjiB2EUBpWtKTw 4444
augur/io/strains.py sha256=fRsriNZv90rokNU0kOm6T7wSZjdCPse9IvRt7UgwdmI 800
augur/io/vcf.py sha256=kTZ5TvTqOUcioITqg6mDDXdS7FZe867qJ69UzbfD0Gs 4590
augur/measurements/__init__.py sha256=Ef1iXseZO-A9MI4QtHDAKw2ktiwInb8khYPocfRvrew 544
augur/measurements/concat.py sha256=pXuoEQteUgYnJtg8oIXgpwurL_9xNxtpRNdBpGRNJ7I 1863
augur/measurements/export.py sha256=1BZKmKSyDKQ7vXmAEd4DR7eUNUTpcGu1s4ojMLbPCNQ 12060
augur/util_support/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
augur/util_support/color_parser.py sha256=ABQ7Mvhi8RdBLRJhUbNVHER5I0i4AsKL_ltjPx1l28I 1105
augur/util_support/color_parser_line.py sha256=HX97chXcdx6kU2esnzvMueW3Xjcv0HDM3ywFzLzP7ns 1078
augur/util_support/node_data.py sha256=XtaoJsPJ1MD6PbAYfTc8UrHNoN7dy70clMWAfV0lNzY 1526
augur/util_support/node_data_file.py sha256=AHJlaHTuNEY0m1kpe20JgTNXmxizV9vTBsyEM9flCXs 4828
augur/util_support/node_data_reader.py sha256=GSCYZkSeCCNl5KnmjYyb5KzesUvRAad4otaYJoY3CTw 2712
nextstrain_augur-26.1.0.dist-info/LICENSE.nextstrain-cli sha256=ypEsgsDMr1gce2AXZftmgMOk9PZMrMTQye2f1NplONo 1396
nextstrain_augur-26.1.0.dist-info/LICENSE.txt sha256=IL06W_w1sWpfzE993Taq0ZJtQeovauBYukLIXj2OaBo 32387
nextstrain_augur-26.1.0.dist-info/METADATA sha256=IcaAfqGCE8NIi4kBjg0p0vcvwT8_Qep84kjZH75d8dQ 6121
nextstrain_augur-26.1.0.dist-info/WHEEL sha256=a7TGlA-5DaHMRrarXjVbQagU3Man_dCnGIWMJr5kRWo 91
nextstrain_augur-26.1.0.dist-info/entry_points.txt sha256=ddOV-_4JASvj3xyrVnQkEoV2ZNUlcVVEYj58ZH4P_m8 46
nextstrain_augur-26.1.0.dist-info/top_level.txt sha256=vC1zCuqjuzm9I8cfrqTDGtSc4dUVha3RFt_ud1eD_PE 6
nextstrain_augur-26.1.0.dist-info/RECORD — —

top_level.txt

augur

entry_points.txt

[console_scripts]
augur = augur.__main__:main