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nellie

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0.4.1 nellie-0.4.1-py3-none-any.whl

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Project: nellie
Version: 0.4.1
Filename: nellie-0.4.1-py3-none-any.whl
Download: [link]
Size: 197299
MD5: 7b8257f20867ccba45c21d91f46af693
SHA256: 59ee07db3ceb0ffaeb1899e21009d5b70adb78c182d003228deff0974942c8c8
Uploaded: 2024-10-31 18:30:33 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: nellie
Version: 0.4.1
Summary: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
Author: Austin E. Y. T. Lefebvre
Author-Email: austin.e.lefebvre+nellie[at]gmail.com
Home-Page: https://github.com/aelefebv/nellie
Classifier: Framework :: napari
Requires-Python: >=3.9
Requires-Dist: numpy (==1.26.4)
Requires-Dist: scipy (==1.12.0)
Requires-Dist: scikit-image (==0.22.0)
Requires-Dist: nd2 (==0.9.0)
Requires-Dist: ome-types (==0.5.2)
Requires-Dist: pandas (==2.2.1)
Requires-Dist: matplotlib (==3.8.3)
Requires-Dist: napari[all]
Requires-Dist: imagecodecs
Requires-Dist: pydantic (==2.9.2)
Requires-Dist: pydantic-core (==2.23.4)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 12459 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.3.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
nellie/__init__.py sha256=UFkmc3zVIUHBJ_x6qgCzNSrzgy0WjtpE_v-W0fk51fo 1421
nellie/cli.py sha256=DRz33JDzvY71pGLfwMx9XL_V6-FXjcOHOb63lTNbxKU 1448
nellie/run.py sha256=CKcbcwrOxzKBuFhS5ICmGKTJL0vTUdbnOTnRgMT_d88 4279
nellie/feature_extraction/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nellie/feature_extraction/hierarchical.py sha256=sgocAIl1RdxglDiYe3vT9O1FCY4R_ZqkRaxDJX97Pe0 81428
nellie/im_info/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nellie/im_info/verifier.py sha256=Ln9dMj_eua9iYBY9mylFH1ACjcWex9BJuzuDrITYWpw 33491
nellie/segmentation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nellie/segmentation/filtering.py sha256=Fiy3FyiK1vgKyNFjmmAUDYFXxBjyEP0q17CAcSIKHso 21587
nellie/segmentation/labelling.py sha256=xxau5Whm4qOHTLRVoQm88pEeFOBaCAD2A9UokUgFDsY 13100
nellie/segmentation/mocap_marking.py sha256=DcHakLUgEQLCrdDKnqNIn0F3GSUlGNclcu053mnn4o0 16559
nellie/segmentation/networking.py sha256=F94xEYAlURjr8hE4HNP-nWvgqxg2_uQfIuUWG7CXTI8 26148
nellie/tracking/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nellie/tracking/all_tracks_for_label.py sha256=KdObcbwCvB9DtrxTl3JaZJiwzHifKnF_cV_Mmwb4C7I 7472
nellie/tracking/flow_interpolation.py sha256=s06V6G3Qq6lgaIBhyfxwzpVYPTEiHAyVdBQgxa_8IXk 17858
nellie/tracking/hu_tracking.py sha256=PLrRPEe5nUtmsH2mNK_RbsbVYBOkZM4c_o6U9byaMNQ 28306
nellie/tracking/voxel_reassignment.py sha256=xZryNtObQXMf4qYLmc0CmL7gVL0DPVGWM6P_jpwrQr8 26890
nellie/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
nellie/utils/base_logger.py sha256=irgCs8y4Qdl6tdFbpdSrKM-lk0F2icaG1L26ySjWD2M 275
nellie/utils/general.py sha256=SPeZZQkZgbTlSunjvqxd0qphouE3A3DtZHV7Bajs5qg 1892
nellie/utils/gpu_functions.py sha256=qriy7YMA57aXVbTBpEtrM6MoyNhOsjejvlDnlSCD06Y 2594
nellie/utils/torch_xp.py sha256=H_WUagL-W6sowct1VNGUvTksAu4sv-TNs8twftDLDOc 5892
nellie_napari/__init__.py sha256=xw9z2T3gR0bbzNoQDdIan8BY_Sg2o18BhM3Jeh8JeUU 112
nellie_napari/discover_plugins.py sha256=la_WXTXxeLcOVNr8rJKRQ2De4_ylrAVmbGzn5Swx5Ak 1546
nellie_napari/logo.png sha256=OpouWfxCVRgVfDTANXY_vNm4kzL69PlM36URlA5PQ1k 89016
nellie_napari/napari.yaml sha256=FA9KZUDRzQiIlrijNmFgavDJ1z-DKI_JgRXo6sk0OuU 218
nellie_napari/nellie_analysis.py sha256=8SmGsErpnc9coezSVJ7haFkelAjW8bt7scCoForkXUM 35898
nellie_napari/nellie_fileselect.py sha256=BLfprtc5V9I_4ssq6pTOYbLVZCy-3MGc1PV-itOCHWc 26043
nellie_napari/nellie_home.py sha256=TInDNiJLDhIxpPYqHaSt11cw0r1vkeQSPw3pOVM6xHI 7657
nellie_napari/nellie_loader.py sha256=1R_HjXSMqf5m4hk1Up9X0gyo7g42NmFwz4FlnLrFElw 8049
nellie_napari/nellie_processor.py sha256=zsbEZFnrEUJoazPp22Myeih8FeDtsBRAj4mC3Ej81qE 23177
nellie_napari/nellie_settings.py sha256=qVjYFITWQXko5rtCFQEx3ZQmTNCFGmyCaFEwoRc9fas 5903
nellie_napari/nellie_visualizer.py sha256=eEFbDhB8W9e_tSsBL1Fc38ZwlgwMYqOCXyCQB68cJMM 20904
tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/unit/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/unit/test_frangi_filter.py sha256=dXq1blTr4t3V-r1JKTP1ajazFqka0Sk1SDc2ohoZuXs 6
tests/unit/test_im_info.py sha256=z6KE31ZMwbySWe5svTs5NZDVhbln3VO82vOtcEHjQnk 3310
nellie-0.4.1.dist-info/LICENSE sha256=HEI9Mzqr74bVYqHVDzwNye3lEWBgY1qknbeFZQ0T4mg 18826
nellie-0.4.1.dist-info/METADATA sha256=iObS95XbHQQ1t_rVRgBIB2lgf-eWkY5Ys6imtjHD7oY 13213
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nellie-0.4.1.dist-info/entry_points.txt sha256=Q5QqkJS8QHhln-R-zwuvM-2f-qb32pNPjcDdKTLssOc 53
nellie-0.4.1.dist-info/top_level.txt sha256=W3hpfQLfAR-QSbL8zSJ2asWRZp40FiIGqX8XZn2Ezkw 27
nellie-0.4.1.dist-info/RECORD — —

top_level.txt

nellie
nellie_napari
tests

entry_points.txt

[napari.manifest]
nellie = nellie_napari:napari.yaml