Reverse Dependencies of nd2

The following projects have a declared dependency on nd2:

• aicsimageio — Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python
• anchor-droplet-chip — Segment organoids and measure intensities
• annotrack — napari plugin for annotating tracks to estimate error rates
• bcells — Analysis of videos of cells with respect to their change in brightness over time.
• bioio-nd2 — A BioIO reader plugin for reading ND2 images.
• cellpose — anatomical segmentation algorithm
• cellpose-plus — cell segmenetation framework based on cellpose
• coppafish — coppaFISH software for Python
• deeptile — Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.
• element-calcium-imaging — Calcium Imaging DataJoint Element
• large-image-source-nd2 — An nd2 (NIS Elements) tilesource for large_image.
• napari-findaureus — Locate bacteria in CLSM obtained infected bone tissue images
• napari-gemspa — A plugin for analysis of single particle tracking experiments
• napari-nd2-folder-viewer — Look through separate nd2 files in one viewer.
• napari-segment — Segment organoids and measure intensities
• nellie — Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
• neuroimage_denoiser — no summary
• nis2pyr — Utility for converting Nikon ND2 files to tiled pyramidal OME TIFF files.
• picassosr — no summary
• pyjacket — Lorem ipsum
• suite2p — Pipeline for calcium imaging
• suite2p-haisslab — Pipeline for calcium imaging
• tardis-em — PyTorch segmentation of 2D/3D images such as electron tomography (ET),Cryo-EM or fluorescent microscopy data into 3D segmented point cloud.
• zarr-tools — Convert nd2 to zarr