Path |
Digest |
Size |
nanome/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
nanome/common/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
nanome/common/eval_common.py |
sha256=tYrpWxT7eBKhjrr2XIpzsFfipXNILOlxJCzLMhdTlkU
|
133546 |
nanome/common/global_config.py |
sha256=acy9GIo6MC7yCKsZTH59VIfglMnBv5phFCoRAEUslMU
|
4777 |
nanome/common/global_settings.py |
sha256=G7Wn6iQAxLHuOnTQ96OoRUTLEqmNn8AylLHpbnN0ZKA
|
6981 |
nanome/common/nanome_genome_annotation.csv |
sha256=GTKm0Vyfw9Vc5qp55gOBLMnf9PAR8rIknMitYS8e9W4
|
895 |
nanome/nanocompare/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
nanome/nanocompare/benchmarkingDataConstruct.py |
sha256=TP2aKAtczeIbCNUgto96Sh4za--MGqe2n0GowMEL2Wg
|
6498 |
nanome/nanocompare/computeRawReadsCoverage.py |
sha256=tKpeGxYvFp0cuBlNKz9vggjWbm8vzulAbit234c8yx8
|
14016 |
nanome/nanocompare/cov_accuracy_eval.py |
sha256=IX1JruOhBwB46-uOAmoCDh1ugmQH5tCuhL5tnQWKQ1s
|
20721 |
nanome/nanocompare/join_preds_eval.py |
sha256=MOU3YTbVhRfnDdo8n9zoKOPNUZ_itte2oOOCbdElzBo
|
31560 |
nanome/nanocompare/nanome_tool.py |
sha256=dT9oh_KGLmyPupGeygh14Ouam00Ph43YMxK2BGoBqLw
|
2566 |
nanome/nanocompare/newtool_parser.py |
sha256=JY2BcDLe0Y2fTNoABtKw4CqQr7JyQ8ZmtzkIOgmBCpw
|
6127 |
nanome/nanocompare/pcc_region_eval.py |
sha256=QZ9t9KLvyVkn6Ek7yaix9iezVyyQ-u28WyvQK0i5yuY
|
13502 |
nanome/nanocompare/plot_figure.py |
sha256=n_VLJyF_nPmf0UzEiuy7lcSy899OYIMzBnnoiZW0I00
|
32686 |
nanome/nanocompare/read_level_eval.py |
sha256=GhgaTA3zc8dof-4tkzm2jCguXDSl2sJGl55W3JZFoJA
|
49034 |
nanome/nanocompare/region_intersect.py |
sha256=erzxNDvOBnh8DS1Ai1wKLBCnyIaKfsmwYeaLECPAJvI
|
2802 |
nanome/nanocompare/site_level_eval.py |
sha256=QFd8LHlpjfY-cvRw_KXdSG64OlYruLGgdE0_UBZMO6U
|
38410 |
nanome/nanocompare/tss_eval.py |
sha256=q2Ktjo3swncoRlzQkojccXTgnH1zQON6iwm9wGfpWhQ
|
13333 |
nanome/nanocompare/report/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
nanome/nanocompare/report/gen_html_report.py |
sha256=J-11YlS48wnBY5dBqAjx8nmdJcNTbXNYC1paeCmbdfM
|
5211 |
nanome/nanocompare/report/gen_txt_readme.py |
sha256=F-9hwA-5Cfu7wVHL1MYlgEakqsvPcy6sCOOckdvfsO8
|
664 |
nanome/nanocompare/utils/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
nanome/nanocompare/utils/combine_output_na12878.py |
sha256=jrXp9mTvAnombYwXFu-d2knrKC6UOr6aYD5MxdBhEZk
|
3017 |
nanome/nanocompare/utils/distribution_influnce_genomic_context.py |
sha256=WtgOFHT03EVu7Yu5fmkIHKcKkGtv8k0Pvzl2xbqHz1I
|
3004 |
nanome/nanocompare/utils/meth_stats_tool.py |
sha256=nI6vz_yvAk1qY-BqmRT3xD9fjnoD6gGXHZWDeoZ1N6E
|
17266 |
nanome/nanocompare/utils/nanopore_data_longread_portion_stats.py |
sha256=I3mDQxyOuWVQ3-oYibocEG_5qozpETpE4py5R5t4oPc
|
1510 |
nanome/nanocompare/utils/parse_urls_input_na12878.py |
sha256=hXnalf2y02Co1754AsCY2KP3b58ePkNAi5FrIW9OimY
|
694 |
nanome/nanocompare/utils/sanity_5hmc/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
nanome/nanocompare/utils/sanity_5hmc/sanity_check_5hmc.py |
sha256=wRjVKwTDWKTI3OkyCw-Dkb94EzI6L7vEZd-NTHkkmio
|
12880 |
nanome/other/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
nanome/other/io/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
nanome/other/io/build_fast5_readid_db.py |
sha256=N-_it3ggjeb-r0qU-VjT2_RrChLU4FGMJprT01ip7hY
|
1429 |
nanome/other/phasing/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
nanome/other/phasing/hp_split.py |
sha256=NQef9TMYp7DkTBIwtdoasLjBXN4vckvtVR4yzw9nL0Q
|
6427 |
nanome/other/phasing/mega_parser.py |
sha256=dQVybYoJnDocgV_eBtZ61k-DQytCotHY2-83amR7gxQ
|
16702 |
nanome/other/phasing/methcall2bed.py |
sha256=j0QfhBOEgEcgY2qsfRILHufvAHyNQpmbQza6FMRhCd8
|
5348 |
nanome/other/phasing/nanomethphase.py |
sha256=eQSWJesuy0vzP7TNmScb7g0tNOapxK42_1LcTt1Zgy8
|
100091 |
nanome/xgboost/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
nanome/xgboost/cs_agg_site.py |
sha256=67pyVGlR5sDUgKlKPBItkHdplgsYWD_i-WwM-qpNkSw
|
4989 |
nanome/xgboost/cs_eval_read.py |
sha256=SaXE_2r_9NPFf3nasJ_SwT-Op6ZBv5YkDPyLi0ts0eE
|
8042 |
nanome/xgboost/cs_eval_site.py |
sha256=1SZijEdlbQBXMpE3_z_5hwqNxenTKRs4oiNVeE3q_Sc
|
8764 |
nanome/xgboost/cs_predict.py |
sha256=donDhEpKKZFlFtwa0U112FE8r2d01_qxNXkjoO5XH2Q
|
12692 |
nanome/xgboost/cs_train.py |
sha256=HR9KxfzWcPStgti6K2PsHJ8TaXD87ONeR9218t3oSh4
|
24032 |
nanome/xgboost/ml_common.py |
sha256=_boGqXsWA-3hpCWHoUGN5zNFb9hXenyaX6uZyFv1iSs
|
3516 |
nanome/xgboost/xgboost_eval.py |
sha256=XmGrHAzMSTw9omgBXFIRkmdZXtnfW23utfzyHFa0uzM
|
8007 |
nanome/xgboost/xgboost_predict.py |
sha256=ZnWNNhrxv_nA5ed_x2KrzI5gwI93WgigoPHOfWcURZU
|
11290 |
nanome/xgboost/xgboost_prepdata.py |
sha256=zBelskD2sZzpouh1jpg2mWOEQR18PAVaodmZPupCA7w
|
3835 |
nanome/xgboost/xgboost_train.py |
sha256=PuL4yVO815FEZUOjC5D7O-beYhszTU47PHFRED5mNIA
|
21045 |
nanome/xgboost/trained_model/NA12878_chr1_xgboost_basic_model.pkl |
sha256=jcf6KUU7bIE5hDH4UwRQRGspY_19PCd6nxSAOKZoVmQ
|
3656408 |
nanome/xgboost/trained_model/NA12878_chr1_xgboost_basic_w_model.pkl |
sha256=nReCdNnS9Vb3bcRrESz-mhDFw0f7Z4VkqBrSOSO_wts
|
65256 |
nanome/xgboost/trained_model/NA12878_chr1_xgboost_basic_w_seq_model.pkl |
sha256=rLdzUh9htAgjZFkq_rBz5GuoaKiQasLClDckTjZ0iwc
|
3977326 |
nanome/xgboost/trained_model/NANOME_NA12878_train1.0_megalodon_deepsignal_XGBoostNA2T_model.pkl |
sha256=yKRcPIa6L6Bo8vPxto7v5jvpmIzqOBgAMKuITXJ06F4
|
89153 |
nanome/xgboost/trained_model/NANOME_NA12878_train1.0_nanopolish_megalodon_deepsignal_XGBoostNA3T_niter10_model.pkl |
sha256=7qKhC85EH9buTm6GaQA_GKi4jR1SUv-Ax-Zy4KsDuw8
|
516861 |
nanome_jax-2.0.11.data/scripts/FilesSeparator.py |
sha256=C5fzjnEdGqM04LQlBfC0MCyJ3_pYlWuqC6IQyowCRwg
|
5252 |
nanome_jax-2.0.11.data/scripts/clean_old_basecall_in_fast5.py |
sha256=J3CwOG1OskKP-DTgmmBbCa0S36KXgQvT5eEmVHliePA
|
2573 |
nanome_jax-2.0.11.data/scripts/combination_model_prediction.py |
sha256=5NN23qz6eyuMcrTVa8NmouakY8gZjM7hCGq9WEX4GGY
|
4521 |
nanome_jax-2.0.11.data/scripts/computeRawReadsCoverage.py |
sha256=NpaWhPLx5a2NMjcsBF0IBGaMaubUislWJjMstZheVNM
|
14002 |
nanome_jax-2.0.11.data/scripts/cs_agg_site.py |
sha256=OnsXqlvdwYx2bXjAbwU0XUnTg3YFzfs1S6LP7x-jt2M
|
4975 |
nanome_jax-2.0.11.data/scripts/cs_eval_read.py |
sha256=wsvcYi0P3B7kvEWugoe2b4mQaX0Pu_WW6AaUf_Nq24I
|
8028 |
nanome_jax-2.0.11.data/scripts/cs_eval_site.py |
sha256=JxI8ssBM6hw6SjsRuHBtIxqTrR1CIxZEF9Kve1RBak8
|
8750 |
nanome_jax-2.0.11.data/scripts/cs_predict.py |
sha256=QBVQxjk9apN6VrBCPnAL9xdEBc8PgU_hkmw0whALPQ4
|
12678 |
nanome_jax-2.0.11.data/scripts/cs_train.py |
sha256=qbaED593KFRswj02BKdGAgsPJJWWWzA2aPobsotFoww
|
24018 |
nanome_jax-2.0.11.data/scripts/extract_methylation_fast5_support_dir.py |
sha256=V4YuHy46NF8fibrGZiQ3TVratfXcuDbD2BmsTxbdBU0
|
7580 |
nanome_jax-2.0.11.data/scripts/gen_html_report.py |
sha256=5c9T4zzB6Sidivel2jx6X9j2rWhm6g7JIov1b5wf7o8
|
5197 |
nanome_jax-2.0.11.data/scripts/gen_txt_readme.py |
sha256=suCpCl0RlSAH4EoVcp4flWIqW3YOw5mRO3fYI1ZFHGo
|
650 |
nanome_jax-2.0.11.data/scripts/getGuppyVersion.py |
sha256=Gm991cBjg7JI5mkzmfwG6tn00YrsQcWXawmRta1BaoY
|
307 |
nanome_jax-2.0.11.data/scripts/hm_cluster_predict.py |
sha256=uD2RPnj06FDZ7vXDL_T7eaYF8NqtsyRyJh3r-c7oHlA
|
7392 |
nanome_jax-2.0.11.data/scripts/hp_split.py |
sha256=_gZDXZXtqJ6bkRfmz1ajx8_tx4deJzW6fo6nlBzyveI
|
6413 |
nanome_jax-2.0.11.data/scripts/join_preds_eval.py |
sha256=2_OcDpSldJJZ6nDsZUFHOhvWwwV3Jfr45n7AUFyBWJg
|
31546 |
nanome_jax-2.0.11.data/scripts/mega_parser.py |
sha256=qEEZkC-bNR_Tv_O5Eb4CbwEv42jYcDeXvAN3AXDoPXE
|
16688 |
nanome_jax-2.0.11.data/scripts/methcall2bed.py |
sha256=AUsNrufdj-MyPxTeyqiEKPXyQRyasAJUeK5fQgFHYko
|
5334 |
nanome_jax-2.0.11.data/scripts/nanomethphase.py |
sha256=1gntroHrwlY6uwAWFrDLsYAMkHnUdxPqyeULQdLaKq8
|
100076 |
nanome_jax-2.0.11.data/scripts/newtool_parser.py |
sha256=crqcPVJmjEVd3m1nh90smaTd-WG_oFLlOKpc8RTvGLc
|
6113 |
nanome_jax-2.0.11.data/scripts/pcc_region_eval.py |
sha256=9ah4kAhOW3m-kiPt6AEIyCCp-Pvs1muAZoQvD4du02c
|
13488 |
nanome_jax-2.0.11.data/scripts/plot_figure.py |
sha256=hlJ0Tntmzfmg0IgjPuAsa6FyBFOyiJJNXAYsRHlW7Gc
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32672 |
nanome_jax-2.0.11.data/scripts/read_level_eval.py |
sha256=B-1aIuXis66dPaj5J9G9WfSplrg2qbx42yVxjW510WM
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49020 |
nanome_jax-2.0.11.data/scripts/region_intersect.py |
sha256=9VKqNQpiyZ_I02hRZ4YeypVQXWjAak9ahScLbjiPAQE
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2788 |
nanome_jax-2.0.11.data/scripts/site_level_eval.py |
sha256=ciskzenlRKhDAmdrQ7sL9MkFz4_a4-U8NODEiIBNTVI
|
38396 |
nanome_jax-2.0.11.data/scripts/sum_chr_mod.py |
sha256=cEIPUk1p100krAxC0lL46heAnyc9HTJgL7EOfxjZeS0
|
4024 |
nanome_jax-2.0.11.data/scripts/tombo_extract_per_read_stats.py |
sha256=0n8FHw6M2Fo2qrVwI3S8gDalaIl9MYBPkMdeXcQ6t4I
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2613 |
nanome_jax-2.0.11.data/scripts/tss_eval.py |
sha256=kMGGOphsstKfH6qAzDinVTh5z2mwuTOqTshyYXvwz0Y
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13319 |
nanome_jax-2.0.11.data/scripts/unify_format_for_calls.sh |
sha256=gV_BFCVIrGFJuVb7v3R-guqVNgGgynUDn97506Frr7U
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2422 |
nanome_jax-2.0.11.data/scripts/validate_nanome_container.sh |
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3747 |
nanome_jax-2.0.11.data/scripts/xgboost_predict.py |
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11276 |
nanome_jax-2.0.11.data/scripts/xgboost_prepdata.py |
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3821 |
nanome_jax-2.0.11.data/scripts/xgboost_train.py |
sha256=UiDCrSMMFMaEz9SnKtReQzPb4dIfu48JUR5z0NgcFWo
|
21031 |
nanome_jax-2.0.11.dist-info/LICENSE |
sha256=MVvtAQlG9eFVPPqXwz3GdC1VQ8BxIL5kF8NZ9P-oPk4
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1079 |
nanome_jax-2.0.11.dist-info/METADATA |
sha256=gMW6aSgJ4cV7cgzsFgHOJo8RCdALlaKPzd5KRc6fQ90
|
11844 |
nanome_jax-2.0.11.dist-info/WHEEL |
sha256=2wepM1nk4DS4eFpYrW1TTqPcoGNfHhhO_i5m4cOimbo
|
92 |
nanome_jax-2.0.11.dist-info/top_level.txt |
sha256=3EdGp9gZhmIZ16mQd0tBzlYuuodxDx_IEXSM8_cyOxo
|
7 |
nanome_jax-2.0.11.dist-info/RECORD |
— |
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