Reverse Dependencies of mudata

The following projects have a declared dependency on mudata:

• chame — Chromatin accessibility module
• GmGM — An implementation of the Gaussian multi-Graphical Model
• lamindb — A data framework for biology.
• liana — LIANA+: a one-stop-shop framework for cell-cell communication
• moscot — Multi-omic single-cell optimal transport tools
• mowgli — Mowgli is a novel method for the integration of paired multi-omics data with any type and number of omics, combining integrative Nonnegative Matrix Factorization and Optimal Transport.
• mudatasets — Multimodal Datasets in MuData format
• muon — Multimodal omics analysis framework
• muvi — MuVI: A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.
• pqdata — Parquet-based serialization for scverse
• pycallingcards — "Calling cards data analysis in Python."
• pychromvar — A python package for chromVAR
• pydance — Deep Learning for Single-cell Analysis
• salamander-learn — Salamander is a non-negative matrix factorization framework for signature analysis
• sc-dandelion — sc-TCR/BCR-seq analysis tool
• scconfluence — scConfluence is a novel diagonal integration method combining uncoupled autoencoders and Optimal Transport on single-cell data.
• scirpy — Python library for single-cell adaptive immune receptor repertoire (AIRR) analysis
• scLift — scevow: Excellent optimization of variant function mapping through weighted random walks at single-cell resolution
• scverse — scverse bundle
• scvi-tools — Deep probabilistic analysis of single-cell omics data.
• shadows — Low-memory data interfaces for scverse
• SingleCellExperiment — Container class for single-cell experiments
• ucdeconvolve — Cell Type Deconvolution For Transcriptomic Data