mirge3

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0.1.4 mirge3-0.1.4-py3-none-any.whl

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Project: mirge3
Version: 0.1.4
Filename: mirge3-0.1.4-py3-none-any.whl
Download: [link]
Size: 2824928
MD5: 12c4591a6a5ac5da9f94751faa0e5d23
SHA256: a01d613424f9db0d88dd37b7c7ff7bc99a50f21b1fe65974f2892bd44f7cb298
Uploaded: 2023-02-20 15:03:20 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: mirge3
Version: 0.1.4
Summary: Comprehensive analysis of small RNA sequencing Data
Author: Arun Patil and Marc Halushka
Author-Email: mhalush1[at]jhmi.edu
Home-Page: https://github.com/mhalushka/miRge3.0/
License: MIT
Keywords: miRge,small RNA analysis,NGS,bioinformatics tools,GUI
Classifier: Development Status :: 1 - Planning
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.8
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.7
Requires-Dist: biopython (>=1.78)
Requires-Dist: cutadapt
Requires-Dist: future (>=0.18.2)
Requires-Dist: joblib (>=0.15.1)
Requires-Dist: matplotlib (>=3.2.1)
Requires-Dist: pandas
Requires-Dist: reportlab (>=3.5.42)
Requires-Dist: scikit-learn
Requires-Dist: scipy (>=1.4.1)
License-File: LICENSE
[Description omitted; length: 2375 characters]

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top_level.txt

mirge

entry_points.txt

miRge3.0 = mirge.__main__:main