Path |
Digest |
Size |
micone/__init__.py |
sha256=rr53uc3bZTzZBIJXW66nq-F5vLvugr8FJd4NDGrRkF4
|
211 |
micone/cli.py |
sha256=4k8LuD4n3fXuNExtl5TGj4Nz7aewkJAkXEE8nVxuQWU
|
6495 |
micone/conversion/__init__.py |
sha256=6dwMlKAUc38ijWr6Xgg0Y62Z6eKvr_xNb9dSamMccCc
|
128 |
micone/conversion/network_converter.py |
sha256=g7VUXHMNaThEHcQaF1mT22dqRm90Iv8cvQrzT1MJv-g
|
832 |
micone/conversion/otu_converter.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
micone/conversion/taxmetadata_converter.py |
sha256=Z2c0eGKspISVqkbdq15Nf7zAWfudxC6kiwfkZDltUyc
|
2392 |
micone/logging/__init__.py |
sha256=iQ1pO_iBLBRSN5Qy1UHmfI35ZfhguO3nSBbZlgVlPKE
|
24 |
micone/logging/logger.py |
sha256=z_q5UesYDQ2syWJQVd-neqEldjmHPpaQOcBoLeL_xNk
|
2146 |
micone/main/__init__.py |
sha256=vjtWjDN7qDmC11jcufw3V3rNAbIuFL7edYjq-Flo3mI
|
119 |
micone/main/lineage.py |
sha256=b__NabxXQB1E9kyCvuZtVvNm7nxS957ocjUoyYcL0dQ
|
8779 |
micone/main/network.py |
sha256=rgbQ27W3gBkj3vrsPJtDD4QPM0MBImyMXCltw_Hrbms
|
31010 |
micone/main/network_group.py |
sha256=xohDtywXBP3OQk5QHv3crgLxgYB7HfHg4mPwLIgf4Dk
|
24577 |
micone/main/otu.py |
sha256=tatCSZfrtsUlcg12rxVvqvrdwVhDDN1xMYsJsyRa2m4
|
16889 |
micone/micone.py |
sha256=XX0Cw8yLcXZVdpYMDhVivaSil3Yar25UJiGtgPdNzn8
|
24 |
micone/pipelines/__init__.py |
sha256=7HOyxOgTJ290_XLvDd0Zv8MgAbF9hWvAa5IXBZO638M
|
29 |
micone/pipelines/command.py |
sha256=VY-m3cxqWKOksU2jRmkbAqeKgKhyDXCrL3X9GqeQc-8
|
6925 |
micone/pipelines/configs/denoise_cluster.config |
sha256=E1g9CnMCSGRh2s0cBVzWZREzOCBU--FIXluI0CPX3hg
|
1570 |
micone/pipelines/configs/network_inference.config |
sha256=eRvgVcwsr3urIa53dZ6hbrPPIyDtrDoQMYIQcW_YyRo
|
2286 |
micone/pipelines/configs/otu_processing.config |
sha256=u1ztnj-Qnb9pgoUlqC9tceQOq3buFjDeATLeyuf2m1E
|
823 |
micone/pipelines/configs/process.config |
sha256=alAvRbsBfv2113PA7EQdlWZKl7z9nuG7_geNBef-dHs
|
1893 |
micone/pipelines/configs/profiles.config |
sha256=2cy1o01Dau_jWr_Vf06eSwmEh6XzLlvPlJhL-w9Negk
|
642 |
micone/pipelines/configs/sequence_processing.config |
sha256=iiHz9VJxip-Lb1kS3P6dRw12ZUjiI6qKQygG6LAAijo
|
1165 |
micone/pipelines/configs/tax_assignment.config |
sha256=FfTyTDdV4WSIneqqe8kWxxL9IhfVV_d0fxkJwkloN_Y
|
839 |
micone/pipelines/envs/micone-cozine/env.yml |
sha256=kKqqjooFwmqpeOySMcOAGZTwRXC88C4oH9B09VdtyMU
|
191 |
micone/pipelines/envs/micone-cozine/post_install.sh |
sha256=bTIEcB8pQjnUetaXBArx5xQ3cAe75i-DKlLBz-8v_-E
|
173 |
micone/pipelines/envs/micone-dada2/env.yml |
sha256=71P9-07_6i9u7cIOCezHP2RljAjcqsTb5VnlqONkttw
|
329 |
micone/pipelines/envs/micone-flashweave/env.yml |
sha256=gKRIJcuOIYKjjfwtVXOC9U5KQGGhJHE3TszMsB17Jcw
|
190 |
micone/pipelines/envs/micone-flashweave/post_install.sh |
sha256=Wy0GJuEEpGe7g5HEIE-hPJVMZi4gXtw7bcCHffVCS7E
|
659 |
micone/pipelines/envs/micone-harmonies/env.yml |
sha256=E7aPLNcP-MFGeUJSCuYuzM7_PpLP3DjnGGTHkK0Bt-M
|
174 |
micone/pipelines/envs/micone-harmonies/post_install.sh |
sha256=aq_GtjcR4COSj7ehXZuEVWSa2-flMhHaQdzVqe82LgQ
|
240 |
micone/pipelines/envs/micone-mldm/env.yml |
sha256=ZtahCuTrfd8hMDuDe5I65mli0vCbhKG0R9xTA-izgnA
|
166 |
micone/pipelines/envs/micone-mldm/post_install.sh |
sha256=-eqkblBPAU53b-NWdaL8qtHlmJvme4SrijE0FSslv90
|
389 |
micone/pipelines/envs/micone-propr/env.yml |
sha256=Je9qMKE7owt5IcM-BJeCTzsAPzDi2-3SLnlt1zaMZzw
|
170 |
micone/pipelines/envs/micone-propr/post_install.sh |
sha256=9cogfEd0I-kL65g73Fipm32tohnCh8By_1_L2ohpSyA
|
113 |
micone/pipelines/envs/micone-qiime2/env.yml |
sha256=rzgTcN0DS3H-cpJbGJDMe8dWbl1ECervkYJf-0RkVaA
|
9224 |
micone/pipelines/envs/micone-qiime2/post_install.sh |
sha256=k95JGl2s9ilUJxcZB0wUj3mqGnuhi6IZZa_Zmu2wBDA
|
117 |
micone/pipelines/envs/micone-sparcc/env.yml |
sha256=2AAmEzR22mNGr6MnlfB_WSRJcD548oAHjJHIHMcOSMo
|
202 |
micone/pipelines/envs/micone-spieceasi/env.yml |
sha256=5UX8ewW_Ko3qlSM5EY92FaNmD9Z7nxXUCz_OI4zB_DY
|
175 |
micone/pipelines/envs/micone-spring/env.yml |
sha256=UzjPoI8bk1RoIskeD33XPsy5j-K8NWPhr0NoCKhfP-0
|
182 |
micone/pipelines/envs/micone-spring/post_install.sh |
sha256=_DpkIsfI23NSpF7Bo4payz1W80DD_VaKY2uOgmrNqBU
|
166 |
micone/pipelines/functions/functions.nf |
sha256=zsZ_qJ9cvYOoBAy5tXTXJH0URaLIZCwZAV54EIPxxMM
|
691 |
micone/pipelines/main.nf |
sha256=UiIN2p_XiXhU4_KsELdr0-f107SdH8X57sqo9OdA07Q
|
1535 |
micone/pipelines/modules/denoise_cluster/chimera_checking/create_seqtable.nf |
sha256=UxcQ1F47oDhVnxT9MO_gaCaha5HDErAxnMHUg4RLuPY
|
375 |
micone/pipelines/modules/denoise_cluster/chimera_checking/export_files.nf |
sha256=432OoGRTPPyv4ZUqYFR__WSnQlsiHlVv0GKLbSNOAos
|
702 |
micone/pipelines/modules/denoise_cluster/chimera_checking/import_files.nf |
sha256=96vB9DUt6dLAba4aIupmwi7RHeflnbjH1Zb5wzMATSE
|
394 |
micone/pipelines/modules/denoise_cluster/chimera_checking/remove_bimera.nf |
sha256=vWqiPmcjDm5kRUHXUMfK6hO2S5YjdWbsIpqpyYrGqTE
|
942 |
micone/pipelines/modules/denoise_cluster/chimera_checking/remove_bimera_workflow.nf |
sha256=m1ciLaatHJXqegU9ik2sjbNOYb0ZZJAALhkVoC0039A
|
622 |
micone/pipelines/modules/denoise_cluster/chimera_checking/uchime.nf |
sha256=2FauKl4R46BqmB9x8F_ZJFAZAv_eIVB3Qmdd61-Ut1w
|
669 |
micone/pipelines/modules/denoise_cluster/chimera_checking/uchime_workflow.nf |
sha256=zwRX95lIQH2Szvi_8poC6n7ZMxeZ0vkTcY7cLQuLctA
|
557 |
micone/pipelines/modules/denoise_cluster/denoise_cluster_workflow.nf |
sha256=heqV62ul12ANIQrTFulkZXOtfp7NX7PGpbJjohAUbb4
|
1379 |
micone/pipelines/modules/denoise_cluster/otu_assignment/closed_reference.nf |
sha256=hWVViAI6YWhYJjafqn_YzDWWPlAODTu6dLnp390VZn8
|
1195 |
micone/pipelines/modules/denoise_cluster/otu_assignment/closed_reference_workflow.nf |
sha256=M3m2T0H0Cc2D3MX0XUW1w5ciXCyM5izFOo333wL_hF8
|
1211 |
micone/pipelines/modules/denoise_cluster/otu_assignment/dada2_paired.nf |
sha256=v27LzJy1KzwSH_VzKwqzS9VFULOLkVF0U2IhZ5GNWPQ
|
778 |
micone/pipelines/modules/denoise_cluster/otu_assignment/dada2_single.nf |
sha256=4Cz8EYme1bS9d673gYu5z2lwnVXQkvi4bmd6CfqMBb8
|
778 |
micone/pipelines/modules/denoise_cluster/otu_assignment/dada2_workflow.nf |
sha256=fT7Vl5TWArJsRUQBypjjLVi47OP5-6sH19YU1D0OjHI
|
983 |
micone/pipelines/modules/denoise_cluster/otu_assignment/de_novo.nf |
sha256=6N9_Lwvr3ULONPedTF_o6T9LBWAaZeHJkp1_3XThFfM
|
915 |
micone/pipelines/modules/denoise_cluster/otu_assignment/de_novo_workflow.nf |
sha256=G_1vb446BYCLPcwh6PIVXp3zFUSIlHUqQKeMEff73Ac
|
1046 |
micone/pipelines/modules/denoise_cluster/otu_assignment/deblur.nf |
sha256=LMMgppg3tNHE-UoVGgpvBlv-MGEMHu1KXw5WUgZbzFg
|
1137 |
micone/pipelines/modules/denoise_cluster/otu_assignment/deblur_workflow.nf |
sha256=kGvxq7CHybj2RQ-ue1PPrGxoADbjL-ANcJ8tilOab_Y
|
758 |
micone/pipelines/modules/denoise_cluster/otu_assignment/fastq2fasta.nf |
sha256=ov7oUDMOJMWMcE6OYzPTb-np1DIfCf83d2SFITsDfuE
|
401 |
micone/pipelines/modules/denoise_cluster/otu_assignment/hash_otutables.nf |
sha256=XsFW1-Ow1zSPYmBXRuKHUnELWkWGUQ020ueNKc6UysU
|
779 |
micone/pipelines/modules/denoise_cluster/otu_assignment/hash_seqtables.nf |
sha256=M2doKEO-lnb6RNJ2e1CmDz59Henketg0WZSkCNmq4L0
|
923 |
micone/pipelines/modules/denoise_cluster/otu_assignment/join_reads.nf |
sha256=QRgxnP3vxWGvXHFI0FBVr6PHvpHRpYRpMIWcuAI322M
|
800 |
micone/pipelines/modules/denoise_cluster/otu_assignment/make_biom_repseqs.nf |
sha256=0C0axomAAvMR8fE5X8Pfr396Hqdwq0b5Osv6wrW6ATY
|
547 |
micone/pipelines/modules/denoise_cluster/otu_assignment/open_reference.nf |
sha256=par49kCM-RNMnSzZFr_FJn2AmHvPqgUuHY9oDpXN5aM
|
1179 |
micone/pipelines/modules/denoise_cluster/otu_assignment/open_reference_workflow.nf |
sha256=UD94UGpUO1QEbaCj4A1z44Ngk_iSw94i-usI5QQLmZo
|
1193 |
micone/pipelines/modules/network_inference/bootstrap/filter.nf |
sha256=dpuUOSxjZ87UdK6FgAScdS5sGvdW-fm889Eawr9vS2k
|
431 |
micone/pipelines/modules/network_inference/bootstrap/pvalue.nf |
sha256=f42Z9E5cEPEyobdC1eOxBS8LP9cbf2lTHywRG7bBgbk
|
971 |
micone/pipelines/modules/network_inference/bootstrap/resample.nf |
sha256=2LaW2VfTRouVxZ7rsDkgoZjc9CAjypaOliCL_XXPm0Q
|
546 |
micone/pipelines/modules/network_inference/correlation/pearson.nf |
sha256=eWDRE8zn_Lc8BY7OEAeumbx73fN2bTDTnWJsFP3Ij2E
|
1143 |
micone/pipelines/modules/network_inference/correlation/pearson_workflow.nf |
sha256=SfsM38Vf0wxnzOUdeKDr5f383LvWJASNhR5_VxnXu8E
|
624 |
micone/pipelines/modules/network_inference/correlation/propr.nf |
sha256=Y6nTEqrAL70sAp25Gs_L6sI-7ivydZSg_aQTMyPiJDM
|
1131 |
micone/pipelines/modules/network_inference/correlation/propr_workflow.nf |
sha256=OL3cUPI2UVL8fUQ7mOifqfikyrmkIt0kd28epqhnsQA
|
614 |
micone/pipelines/modules/network_inference/correlation/sparcc.nf |
sha256=gQ_ufbGE7RtZaQNP9S1NKsg9HwsziWhsDfnTgr3wg5M
|
1220 |
micone/pipelines/modules/network_inference/correlation/sparcc_workflow.nf |
sha256=q4kb6eC6H7CLUtToBFLcphYkht84Ho2sl8opdIAIO1M
|
619 |
micone/pipelines/modules/network_inference/correlation/spearman.nf |
sha256=rqk86gq3F-6niBvDVd0np9UrML4iEzB6YbWDVWwqcfs
|
1148 |
micone/pipelines/modules/network_inference/correlation/spearman_workflow.nf |
sha256=jv8H-sAAZ8gKDeRiZpwN6d-KXPQo8tq7P9KQe1Fcoz8
|
629 |
micone/pipelines/modules/network_inference/direct/cozine.nf |
sha256=3hIQHOVSAcDBAuu7gy1HTUsXANwnpm7C3vq_mD9aFyE
|
1045 |
micone/pipelines/modules/network_inference/direct/cozine_workflow.nf |
sha256=4aF7bRY0vbsGkUjO9KLDDBl5BYdxnDBvaCwxp1YWy3g
|
392 |
micone/pipelines/modules/network_inference/direct/export_gml.nf |
sha256=niIc4N7MjmVNp3ObWL2P2zbASUvlvJVK5EX8HkykihA
|
792 |
micone/pipelines/modules/network_inference/direct/flashweave.nf |
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|
1322 |
micone/pipelines/modules/network_inference/direct/flashweave_workflow.nf |
sha256=63CPLSRy4v-Md0xu91LPmQXb7f8Ip8s6wZAcB-xGYtg
|
471 |
micone/pipelines/modules/network_inference/direct/harmonies.nf |
sha256=ZKXs1ln8EQ0srE249I1StcQu__JyIjxdbnteH5eJRlM
|
1141 |
micone/pipelines/modules/network_inference/direct/harmonies_workflow.nf |
sha256=Ul28Z8a4agafgL_OeWuLin00HVXtfGGdbjFLc2thR08
|
407 |
micone/pipelines/modules/network_inference/direct/mldm.nf |
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|
1094 |
micone/pipelines/modules/network_inference/direct/mldm_workflow.nf |
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|
382 |
micone/pipelines/modules/network_inference/direct/spieceasi.nf |
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|
1349 |
micone/pipelines/modules/network_inference/direct/spieceasi_workflow.nf |
sha256=PXKT_Iyrp75IX_qcCqcJFNEdweAm7LVbMNogfpZfqDs
|
407 |
micone/pipelines/modules/network_inference/direct/spring.nf |
sha256=Yfl0XiqsKvcsn2xTBFjeDPq1EjQ3vKavG_cgRFi4c8U
|
1183 |
micone/pipelines/modules/network_inference/direct/spring_workflow.nf |
sha256=1GFpWun13Auq75wG3HHS0xPRoxoWivO-LFsOSAVkbMA
|
392 |
micone/pipelines/modules/network_inference/network/create_consensus.nf |
sha256=wO3cYkSJ_rqckAS9W-LK9VJ18Eebdswl_YhmV1aLLFk
|
921 |
micone/pipelines/modules/network_inference/network/make_network_with_pvalue.nf |
sha256=JdNxoIdcyQDvk79KAjWEn8lQbux5MZPQtyAWE4qjYNQ
|
1095 |
micone/pipelines/modules/network_inference/network/make_network_without_pvalue.nf |
sha256=pokg1aTsVvYBQahOUydnq8-TX5XpZGx33mr7qB_2_cU
|
980 |
micone/pipelines/modules/network_inference/network/merge_pvalues.nf |
sha256=OcIYvA-JccsGpKp-qtdN_p5QBRFAoVNwtjmZmlM0rUc
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545 |
micone/pipelines/modules/network_inference/network_inference_workflow.nf |
sha256=MMGQIBKNE_qEiGR8GJxWcNjuB-heEjpNlriwnIKy4Fk
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2825 |
micone/pipelines/modules/otu_processing/export/biom2tsv.nf |
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742 |
micone/pipelines/modules/otu_processing/otu_processing_workflow.nf |
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1168 |
micone/pipelines/modules/otu_processing/transform/fork.nf |
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798 |
micone/pipelines/modules/otu_processing/transform/group.nf |
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987 |
micone/pipelines/modules/otu_processing/transform/normalize_filter.nf |
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1553 |
micone/pipelines/modules/sequence_processing/demultiplexing/demultiplexing_illumina_paired.nf |
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1084 |
micone/pipelines/modules/sequence_processing/demultiplexing/demultiplexing_illumina_single.nf |
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1084 |
micone/pipelines/modules/sequence_processing/demultiplexing/demultiplexing_paired_workflow.nf |
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770 |
micone/pipelines/modules/sequence_processing/demultiplexing/demultiplexing_single_workflow.nf |
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751 |
micone/pipelines/modules/sequence_processing/demultiplexing/export_sequences.nf |
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858 |
micone/pipelines/modules/sequence_processing/demultiplexing/import_sequences_paired.nf |
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402 |
micone/pipelines/modules/sequence_processing/demultiplexing/import_sequences_single.nf |
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382 |
micone/pipelines/modules/sequence_processing/sequence_processing_paired_workflow.nf |
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1149 |
micone/pipelines/modules/sequence_processing/sequence_processing_single_workflow.nf |
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1153 |
micone/pipelines/modules/sequence_processing/trimming/export_visualization_paired.nf |
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533 |
micone/pipelines/modules/sequence_processing/trimming/export_visualization_single.nf |
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486 |
micone/pipelines/modules/sequence_processing/trimming/import_sequences_paired.nf |
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384 |
micone/pipelines/modules/sequence_processing/trimming/import_sequences_single.nf |
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|
384 |
micone/pipelines/modules/sequence_processing/trimming/quality_analysis_paired.nf |
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|
719 |
micone/pipelines/modules/sequence_processing/trimming/quality_analysis_single.nf |
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691 |
micone/pipelines/modules/sequence_processing/trimming/trimming_paired.nf |
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1030 |
micone/pipelines/modules/sequence_processing/trimming/trimming_paired_workflow.nf |
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878 |
micone/pipelines/modules/sequence_processing/trimming/trimming_single.nf |
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1030 |
micone/pipelines/modules/sequence_processing/trimming/trimming_single_workflow.nf |
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878 |
micone/pipelines/modules/tax_assignment/assign/add_md2biom.nf |
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783 |
micone/pipelines/modules/tax_assignment/assign/blast.nf |
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