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mgnify-pipelines-toolkit

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0.1.8 mgnify_pipelines_toolkit-0.1.8-py3-none-any.whl

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Project: mgnify-pipelines-toolkit
Version: 0.1.8
Filename: mgnify_pipelines_toolkit-0.1.8-py3-none-any.whl
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Uploaded: 2024-10-23 15:23:48 +0000

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METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: mgnify_pipelines_toolkit
Version: 0.1.8
Summary: Collection of scripts and tools for MGnify pipelines
Author-Email: MGnify team <metagenomics-help[at]ebi.ac.uk>
License: Apache Software License 2.0
Keywords: bioinformatics,pipelines,metagenomics
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.9
Requires-Dist: biopython (==1.82)
Requires-Dist: numpy (==1.26.0)
Requires-Dist: pandas (==2.0.2)
Requires-Dist: regex (==2023.12.25)
Requires-Dist: mgnify-pipelines-toolkit[tests]; extra == "dev"
Requires-Dist: pre-commit (==3.8.0); extra == "dev"
Requires-Dist: black (==24.8.0); extra == "dev"
Requires-Dist: flake8 (==7.1.1); extra == "dev"
Requires-Dist: pep8-naming (==0.14.1); extra == "dev"
Requires-Dist: pytest (==7.4.0); extra == "tests"
Requires-Dist: pytest-md (==0.2.0); extra == "tests"
Requires-Dist: pytest-workflow (==2.0.1); extra == "tests"
Requires-Dist: biopython (==1.82); extra == "tests"
Requires-Dist: pandas (==2.0.2); extra == "tests"
Requires-Dist: numpy (==1.26.0); extra == "tests"
Requires-Dist: regex (==2023.12.25); extra == "tests"
Provides-Extra: dev
Provides-Extra: tests
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 4553 characters]

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Tag: py3-none-any

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mgnify_pipelines_toolkit-0.1.8.dist-info/RECORD — —

top_level.txt

mgnify_pipelines_toolkit

entry_points.txt

[console_scripts]
are_there_primers = mgnify_pipelines_toolkit.analysis.amplicon.are_there_primers:main
assess_inflection_point_mcp = mgnify_pipelines_toolkit.analysis.amplicon.assess_inflection_point_mcp:main
assess_mcp_proportions = mgnify_pipelines_toolkit.analysis.amplicon.assess_mcp_proportions:main
classify_var_regions = mgnify_pipelines_toolkit.analysis.amplicon.classify_var_regions:main
fasta_to_delimited = mgnify_pipelines_toolkit.utils.fasta_to_delimited:main
fastq_suffix_header_check = mgnify_pipelines_toolkit.analysis.shared.fastq_suffix_header_check:main
find_mcp_inflection_points = mgnify_pipelines_toolkit.analysis.amplicon.find_mcp_inflection_points:main
get_mpt_version = mgnify_pipelines_toolkit.utils.get_mpt_version:main
get_subunits = mgnify_pipelines_toolkit.analysis.shared.get_subunits:main
get_subunits_coords = mgnify_pipelines_toolkit.analysis.shared.get_subunits_coords:main
library_strategy_check = mgnify_pipelines_toolkit.analysis.shared.library_strategy_check:main
make_asv_count_table = mgnify_pipelines_toolkit.analysis.amplicon.make_asv_count_table:main
mapseq2biom = mgnify_pipelines_toolkit.analysis.shared.mapseq2biom:main
mapseq_to_asv_table = mgnify_pipelines_toolkit.analysis.amplicon.mapseq_to_asv_table:main
primer_val_classification = mgnify_pipelines_toolkit.analysis.amplicon.primer_val_classification:main
remove_ambiguous_reads = mgnify_pipelines_toolkit.analysis.amplicon.remove_ambiguous_reads:main
rev_comp_se_primers = mgnify_pipelines_toolkit.analysis.amplicon.rev_comp_se_primers:main
standard_primer_matching = mgnify_pipelines_toolkit.analysis.amplicon.standard_primer_matching:main