mclumi

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0.0.4 mclumi-0.0.4-py3-none-any.whl

Wheel Details

Project: mclumi
Version: 0.0.4
Filename: mclumi-0.0.4-py3-none-any.whl
Download: [link]
Size: 85159
MD5: 8dc49fc0de09507996415d767f555c0b
SHA256: f34ae1c1b65d7a75d5257c5d6b5da1886bd7d8df99da326f02d02e65e6b51f00
Uploaded: 2023-12-28 05:07:29 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: mclumi
Version: 0.0.4
Summary: UMI de-duplication using mclUMI
Author: Jianfeng Sun
Maintainer: Jianfeng Sun
Maintainer-Email: jianfeng.sun[at]ndorms.ox.ac.uk
Home-Page: https://cribbslab.co.uk/
Project-Url: Repository, https://github.com/cribbslab/mclumi
License: MIT
Keywords: packaging,mclumi
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Requires-Python: >=3.10,<4.0
Requires-Dist: click (<9.0.0,>=8.1.7)
Requires-Dist: markov-clustering
Requires-Dist: numpy (<2.0.0,>=1.26.2)
Requires-Dist: pandas (<3.0.0,>=2.1.4)
Requires-Dist: pyfastx (<3.0.0,>=2.0.2)
Requires-Dist: pyfiglet (<2.0.0,>=1.0.2)
Requires-Dist: pysam (<0.23.0,>=0.22.0)
Requires-Dist: pyyaml (<7.0.0,>=6.0.1)
Requires-Dist: scikit-learn (<2.0.0,>=1.3.2)
Description-Content-Type: text/markdown
[Description omitted; length: 7680 characters]

WHEEL

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entry_points.txt

mclumi = mclumi.main:main