masspy

View on PyPIReverse Dependencies (2)

0.1.7 masspy-0.1.7-py3-none-any.whl

Wheel Details

Project: masspy
Version: 0.1.7
Filename: masspy-0.1.7-py3-none-any.whl
Download: [link]
Size: 411741
MD5: 22378e40e55f31d156f448713ad22d98
SHA256: cde84d3744e8143d6a5a0b9d51a656874aabeea3de1f61371c234420df29b17c
Uploaded: 2022-12-09 02:34:41 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: masspy
Version: 0.1.7
Summary: MASSpy is a package for dynamic modeling of biological processes.
Author: Zachary B. Haiman
Author-Email: zhaiman[at]eng.ucsd.edu
Maintainer: Zachary B. Haiman
Maintainer-Email: zhaiman[at]eng.ucsd.edu
Home-Page: https://github.com/SBRG/MASSpy/
Download-Url: https://pypi.org/project/masspy/
Project-Url: Source, https://github.com/SBRG/MASSpy/
Project-Url: Documentation, https://masspy.readthedocs.io/
Project-Url: DockerHub, https://hub.docker.com/r/sbrg/masspy/
Project-Url: Tracker, https://github.com/SBRG/MASSpy/issues/
License: MIT
Keywords: python,metabolism,biology,constraint-based modeling,linear programming,mixed-integer,optimization,flux-balance analysis,reconstruction,dynamic simulation,kinetic modeling,ordinary differential equations
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: ~=3.7
Requires-Dist: cobra (<0.24.0)
Requires-Dist: libroadrunner (~=2.2)
Requires-Dist: numpy
Requires-Dist: scipy
Requires-Dist: optlang
Requires-Dist: pandas
Requires-Dist: six
Requires-Dist: sympy
Requires-Dist: tabulate
Requires-Dist: bumpversion; extra == "all"
Requires-Dist: pre-commit; extra == "all"
Requires-Dist: towncrier; extra == "all"
Requires-Dist: tox; extra == "all"
Requires-Dist: ipywidgets; extra == "all"
Requires-Dist: ipykernel; extra == "all"
Requires-Dist: nbsphinx; extra == "all"
Requires-Dist: notebook; extra == "all"
Requires-Dist: pandoc; extra == "all"
Requires-Dist: gurobipy; extra == "all"
Requires-Dist: sphinx; extra == "all"
Requires-Dist: sphinx-autoapi; extra == "all"
Requires-Dist: sphinx-rtd-theme; extra == "all"
Requires-Dist: sphinxcontrib-bibtex (~=2.2); extra == "all"
Requires-Dist: matplotlib; extra == "all"
Requires-Dist: bumpversion; extra == "development"
Requires-Dist: pre-commit; extra == "development"
Requires-Dist: towncrier; extra == "development"
Requires-Dist: tox; extra == "development"
Requires-Dist: ipywidgets; extra == "docs"
Requires-Dist: ipykernel; extra == "docs"
Requires-Dist: nbsphinx; extra == "docs"
Requires-Dist: notebook; extra == "docs"
Requires-Dist: pandoc; extra == "docs"
Requires-Dist: gurobipy; extra == "docs"
Requires-Dist: sphinx; extra == "docs"
Requires-Dist: sphinx-autoapi; extra == "docs"
Requires-Dist: sphinx-rtd-theme; extra == "docs"
Requires-Dist: sphinxcontrib-bibtex (~=2.2); extra == "docs"
Requires-Dist: matplotlib; extra == "docs"
Requires-Dist: pytest; extra == "tests"
Requires-Dist: pytest-cov; extra == "tests"
Requires-Dist: coverage[toml]; extra == "tests"
Requires-Dist: matplotlib; extra == "visualization"
Provides-Extra: all
Provides-Extra: development
Provides-Extra: docs
Provides-Extra: tests
Provides-Extra: visualization
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 5874 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.38.4)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
mass/__init__.py sha256=EhAU9sim-aVmCLg5JDBPlMqrzjMq9k4WxaIetL7iSCI 1049
mass/exceptions.py sha256=A7PgGfF87VZLmgVU1hTGgnr6tpx9-B2m2I-l2MxmF8c 391
mass/core/__init__.py sha256=-nCxvZZSWErJEcC0Ty7rx0Fc74kJkWoeVhW-enbvMfA 368
mass/core/mass_configuration.py sha256=nrb0FuC-8rCKlFM1EllRodwNAaTB_b0S_GW0ezf1Vik 20743
mass/core/mass_metabolite.py sha256=OO7r5dIYStm2rVTbDl6sZRA4y2cPKGjm2fIrktrqjsQ 11958
mass/core/mass_model.py sha256=sCqkr51NURaM_FqvrE7OhmSIOdKwsMirW4VNNYLNlPA 97201
mass/core/mass_reaction.py sha256=-ZgQDbC8SfIgvvnfibYQ71iXyjTBzuaWGPJRTcE8Lfg 48594
mass/core/mass_solution.py sha256=7HDVa87p5Ptw0ehxLKpUYOgVd4qY0E8CfMH20A-n018 15776
mass/core/units.py sha256=_LOQE4m1aSzoCeqndXrG9SvjNklZ4Uck_DTOV0XNnvY 16355
mass/enzyme_modules/__init__.py sha256=RJhxxp1Wf6NuyR11v4U1pw7b-hTV-Vufo360OoP2mMc 360
mass/enzyme_modules/enzyme_module.py sha256=7iqqEpMobyYD34jnCMOiUFPhNaSVzUerKnKwywdNzLM 73126
mass/enzyme_modules/enzyme_module_dict.py sha256=yPbev2VcdH3X3yEpqPAq9jT-zkz4ho8zYulzapsHLwk 14182
mass/enzyme_modules/enzyme_module_form.py sha256=Yr5SVer_np4aAi4q3_N_kATxmkidPQa9FF_fuHc2354 13437
mass/enzyme_modules/enzyme_module_reaction.py sha256=v0Kfletitih0_5zrVWcqp0amO7FxpV6E12II9HCVM9U 6284
mass/example_data/__init__.py sha256=6LTpILk8H106_-ZNzsACB7JSM2vsNQnIGuw-PpQLbsk 2515
mass/example_data/maps/RBC.glycolysis.map.json sha256=yWchlf7eB_lo1NjNrfITOZqWIzVlklxx7XUhSNrELo0 45702
mass/example_data/maps/multicompartment_map.json sha256=uUYHM5J_-u2h_Q7F7GHRwzUJtvIlUj6XuchGqlTDqMI 18640
mass/example_data/maps/phosphate_trafficking_map.json sha256=cp_UvLEO0dOzxdBzLBhDBlYS44ilC1_P4xxH4cts0nM 7224
mass/example_data/maps/sb2_RBC_map.json sha256=z09ytzQ-AE9SJx_oeEV1-GuKJFYpO7Ppz5wcY2_DpSE 83439
mass/example_data/maps/sb2_amp_salvage_network_map.json sha256=HXFH9b0izjLCGjE37Jw-JOFu42Y4bEm4K_SxyGV-u9w 27449
mass/example_data/maps/sb2_glycolysis_map.json sha256=-wkrmwKz2BPTlnjWS9ShXYjIt-8GPipEKYlTNVZwGT8 33233
mass/example_data/maps/sb2_pentose_phosphate_pathway_map.json sha256=TyQfoYqkekOR8G_LT7-LhXNqvbcbi87154WbFNeK8lw 24633
mass/example_data/maps/simple_toy_map.json sha256=zBA_WR-01ssMtKonebZKZd81haHpqggCRxBvrFCbtSc 3410
mass/example_data/models/Glycolysis.json sha256=Jzw6BY_ShOadaAWZZDlnHzGvJqEdF82HwiFHKeQD_LU 18455
mass/example_data/models/Glycolysis_FKRM.json sha256=ECoNXdIuIXTCes35K6rEa8Yp4vsV8Uo68nvcnSNm3c8 98359
mass/example_data/models/Glycolysis_Hb_HEX1.json sha256=lJCmDePlBZ-72pZ6SrO07oKTOtymsvbvCHMHjjo8ZBw 34714
mass/example_data/models/Glycolysis_Hb_PFK.json sha256=a0uaa6tNfm9J2DSET7GKuPLxfhZhiF1KAiPLycoAIL0 52105
mass/example_data/models/Glycolysis_Hb_PYK.json sha256=DSo-UKgWPZJipys7Df4eO3Kcpw3JO4OcptnxCtYaA3I 61155
mass/example_data/models/Hemoglobin.json sha256=MCKdbylqPB_giX8zQYZycT4bRb--6cgzQ8vaS7PLiyk 8397
mass/example_data/models/Model_to_Repair.json sha256=OsM-7MoWnIG8fPtMpMqdlBFdUG7a43Avm_PEALD0pvE 73332
mass/example_data/models/MultiCompartment.json sha256=47AK6HDeeLn5BN3u5Vr5t2G2IF3Tcl3_9Dg7THrvByU 10831
mass/example_data/models/Phosphate_Trafficking.json sha256=CI3fx4XIdk7Xsdf7VgSHuCvkD1-PNTVlgibcvzYVJvE 4865
mass/example_data/models/SB2_AMPSalvageNetwork.json sha256=fMMekG9w35xKJigGBPlmmxIS2slcCpfpVR5YlGCpXjE 15401
mass/example_data/models/SB2_Glycolysis.json sha256=DjJmkvHnMngHBxBngZZW5TQz6Y9CRxzN1DYBrF7ygL4 17571
mass/example_data/models/SB2_Hemoglobin.json sha256=MCKdbylqPB_giX8zQYZycT4bRb--6cgzQ8vaS7PLiyk 8397
mass/example_data/models/SB2_PFK.json sha256=iTgqR-9a1maD-oz2YwvFjzFvx3a2u9a2i1vA6A4cyeo 29454
mass/example_data/models/SB2_PentosePhosphatePathway.json sha256=pt01LgM2OVDui69IrM381kMxxEij7mOOa1AAociksxc 15069
mass/example_data/models/Simple_Toy.json sha256=sBy0IhRjbqj3pe8HBrclP-ZexywUcWwuZ0uT9lm0G_4 1837
mass/example_data/models/Simple_Toy.xml sha256=DTgBpwgsALPbokjShq5scPF-hXjZMUUGf722VAOoFkE 4666
mass/example_data/models/WholeCellRBC_MA_Rates.json sha256=wtU-etI9c12RAsJgPAY_Pr5dsy3xjonM_qw3u7y1LBU 127758
mass/example_data/models/WholeCellRBC_MA_Rates.xml sha256=LHW9zCz_2KvBpvrWDGaZqerXo56WXBib9gJgxeb2Qo0 251490
mass/example_data/models/WholeCellRBC_MM_Rates.json sha256=RMOVOAIZONATcBZWnngQvBLJtZo_XpRqtOpPsd1Xgao 156456
mass/example_data/models/WholeCellRBC_MM_Rates.xml sha256=BwpTN_BpKNhroslB8u45ZtukgmT2QTS8I9N2r-tmVFw 365655
mass/example_data/models/textbook.json sha256=6E9oTLpJ5Yqdw2VACiJfrYA5q684t46-rVA4psHpuXI 71684
mass/example_data/models/textbook.xml sha256=LLJsx48zhcJr7QALF_7_TNrTf9xbYfMtws8U9gqSGzw 144771
mass/io/__init__.py sha256=W5rhYhd9oXO_dawnwVTdo_867vlXwK0Qxywf9RsGqU8 177
mass/io/dict.py sha256=Mi03RCC8PDD53PiWJ_PuqlK3-G_i4ooifvKwrg9Y-1g 23241
mass/io/json.py sha256=VmDzimCa_0QFD8REWbDImbv053xOXw5Ug5USgwEQpnk 13318
mass/io/sbml.py sha256=9f_66T1MOyEjodqvCfOFPex0h2-rS0xGBUgyobgUc18 125845
mass/simulation/__init__.py sha256=_LSKAAur_mihWBc_mUi671Um3TyY79aDJmA90y5ukjo 154
mass/simulation/ensemble.py sha256=1-bY4sLOSALtQgw25Dc4IWAiUwW303qpJx2aY3vLkuI 33753
mass/simulation/simulation.py sha256=N1iXx3QjvBgb1CuRPTT9mIquKRKjmpC3spPMogA1D_I 63646
mass/thermo/__init__.py sha256=fM9GxKOLmESxJWWkkBhudCT-0tygj-YEwXv5vj12fbk 392
mass/thermo/conc_solution.py sha256=Ra40qODR12KHYNxgH_HGwv6z-AwrrowYFiSff-5Tiqw 10834
mass/thermo/conc_solver.py sha256=JjaG3Oz3I3GrHEQ5HiP0ZlkhA1RZLHT8TlET9TN4OEs 78048
mass/thermo/conc_sampling/__init__.py sha256=lHgZygxEpuyjPr0Mz_gtFsufy-qodKQkbvgmyjOoauE 3070
mass/thermo/conc_sampling/conc_achr.py sha256=BFsQAWk0KDzs6wby2v0B7J8-U3mZiRYulu7YzHHiOy4 5969
mass/thermo/conc_sampling/conc_hr_sampler.py sha256=sqsf6lXyHC5MmxS_9CJZDvHeCyw2RpCukrfkJlv1h9k 18935
mass/thermo/conc_sampling/conc_optgp.py sha256=NM5CJStvy-GTR4cuGZCfsJbnl74Jx63pBzJ0yNFfIyQ 9209
mass/thermo/conc_sampling/conc_sampling.py sha256=qT0QdL5L8bU8dXm8ZqKxAs7tj79J7J2xRU-zUiDImx4 3071
mass/util/__init__.py sha256=V3oxq_nDiVHlwV0nqbkLKyv_rfkpmtWJ7AyqGhdm-0k 193
mass/util/dict_with_id.py sha256=1lg3VTo7VUgcCkjOAi21fx1umn-pwoAEcSm8LY5bfs0 4772
mass/util/expressions.py sha256=DpOb6ZPLAPnyXjMv5u3LNA7NUFRByugLmkDuhPCyhTg 20903
mass/util/matrix.py sha256=aOHvnT-YOsRrVGOLH3InWNIfcUkmtJJDE9JkMazPg2g 27438
mass/util/qcqa.py sha256=Vt_3-XzcLE8skpKyzBwDaXqiNEeOznRMhMOG895MG4g 28353
mass/util/util.py sha256=1lvm43a_X93wMlIUtLRy8HQKGwBgdU9cPTZsQxZIr6k 6893
mass/visualization/__init__.py sha256=hTOv0VtzZCGKVBqIRhjUyX4wc-YGCS4XkofucLnobFk 20611
mass/visualization/comparison.py sha256=3gjoss0VaVwgKtlYSzZzlbm5bm8rsJ9bylUuAGmcZZY 9603
mass/visualization/phase_portraits.py sha256=LbnzjfK38dwORe_rsdfcmiMfVAj1Un7UMA82bjJ2ymw 25664
mass/visualization/time_profiles.py sha256=G11hXOiTBj8dk1bT_Mw9r1pxmNBi0y7tqWZjYKQX_Zk 16169
mass/visualization/visualization_util.py sha256=A1nJypoxmwU7aA7n4IPEep4tsFR2dAA_rK4CBhURIdI 38656
masspy-0.1.7.dist-info/LICENSE sha256=NvBnunBOuaKVdzOTBzfye6VRO94GPgrPl0oV2TzEhDU 1087
masspy-0.1.7.dist-info/METADATA sha256=WfYec4auY4JlrikjZBb_oXJLEQfXvkWSwEfTSIfZSss 9144
masspy-0.1.7.dist-info/WHEEL sha256=2wepM1nk4DS4eFpYrW1TTqPcoGNfHhhO_i5m4cOimbo 92
masspy-0.1.7.dist-info/top_level.txt sha256=bdMsNMntzaY8gQEOVOed8gfITx8d9sOcdAu65ueP92E 5
masspy-0.1.7.dist-info/zip-safe sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs 1
masspy-0.1.7.dist-info/RECORD

top_level.txt

mass

zip-safe