Reverse Dependencies of mappy

The following projects have a declared dependency on mappy:

• bam2plot — Plot of coverage from bam file
• biobookshelf — a collection of python scripts and functions for exploratory analysis of bioinformatic data in Python
• boss_runs — Dynamic, adaptive sampling during nanopore sequencing
• circfull — circfull: a tool to detect and quantify full-length circRNA isoforms from circFL-seq
• CIRI-long — circular RNA identification from Nanopore
• countess-minimap2 — Sequence Alignment Plugin for CountESS, based in Minimap2
• DAJIN2 — One-step genotyping tools for targeted long-read sequencing
• deduce-uces — DedUCE is a tool for efficiently finding ultra-conserved elements across multiple genomes.
• deviaTE — Python tool for the analysis and visualization of mobile genetic elements
• fast5mod — Extraction of modified base data from Guppy Fast5 output
• flair-brookslab — flair
• flowalign — Alignment generator using mappy and Python
• gapmm2 — gapmm2: gapped alignment using minimap2
• genofunc — no summary
• HaplotagLR — Phasing individual long reads using known haplotype information.
• hicstuff — General purpose stuff to generate and handle Hi-C data in its simplest form.
• HMMSTR — "HMMSTR is a bioinformatics software package for calling tandem reapeat copy number from raw, long-read, sequencing reads."
• levseq — no summary
• LRphase — Phasing individual long reads using known haplotype information.
• mappy-rs — A multithreaded python wrapper for rust bindings of minimap2.
• megalodon — Nanopore base calling augmentation
• ont-bonito — no summary
• ont-tombo — Analysis of raw nanopore sequencing data.
• panqc — Package & software for analysis of nucleotide redundancy within CDS-based pan-genome analyses
• poreplex — A versatile sequence read processor for nanopore direct RNA sequencing
• py3helpers — Python utility functions.
• readfish — ONT adaptive sampling
• readfish-summarise — A blazingly fast Python/Rust library for summarising readfish FASTQ output
• readfish-tools — A blazingly fast Python library for reading and summarising readfish output
• readtagger — Tags reads in a BAM file based on other BAM files.
• rough-graph-mapper — Rough Graph Mapper
• xron — A deep neural network basecaller for nanopore sequencing.