Reverse Dependencies of magicgui

The following projects have a declared dependency on magicgui:

• ads-napari — Axon/Myelin segmentation using AI
• affinder — Quickly find the affine matrix mapping one image to another using manual correspondence points annotation
• AlveolEye — Reads lung slides with AI-driven and classical methods
• avidaq — controls for napari and micromanger
• beetlesafari — A napari plugin for loading and working with light sheet imaging data of developing embryos acquired using ClearControl, e.g. _Tribolium castaneum_.
• biaplotter — A base napari plotter widget for interactive plotting
• blik — Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
• bmiptools — BioMaterial Image Processing tools (bmiptools) is a python library of functions for image processing of certain type of biological images (e.g. FIB-SEM, Back-scattering, ecc... ). The library is equipped with a minimal GUI thought for non-expert users.
• brainreg-napari — Multi-atlas whole-brain microscopy registration
• btrack — A framework for Bayesian multi-object tracking
• cellcanvas — A tool for painting in cellular architecture
• cellfinder — Automated 3D cell detection in large microscopy images
• cellfinder-napari — Efficient cell detection in large images
• cellfinder-visualize — Cellfinder output visualization
• cellpose-counter — Cell/nuclei counter using cellpose models
• competitionassay — Software for the analysis of competition assay data.
• coppafish — coppaFISH software for Python
• cryocanvas — A plugin for interactive segmentation of CryoET data using ML embeddings
• cut-detector — Automatic Cut Detector
• cylindra — Spectral analysis, simulation and subtomogram averaging of heterogenic cylindrical structures
• depalma-napari-omero — Napari interface for the De Palma lab.
• disease-classifier — A disease classifier based on iPAC images.
• dummy-test-plugin — A simple plugin for testing purposes
• eats-worm — Method for extracting GCaMP signal from volumetric imaging recordings
• elastix-napari — A toolbox for rigid and nonrigid registration of images.
• emcaps — Code for the paper Genetically encoded barcodes for correlative volume electron microscopy
• epicure — Napari plugin to manually correct epithelia segmentation in movies
• epitools — Quantifying 2D cell shape and epithelial tissue dynamics
• ezmsg-vispy — no summary
• featureforest — A napari plugin for segmentation using vision transformer features
• finn-viewer — n-dimensional array viewer for cell tracking data in Python
• fish-scan — Plugin to enhance fish detection and analysis for underwater research
• flimtools — A set of tools to do linear unmixing and phasor analysis on FLIM data.
• generate-dense-patches — A simple plugin to create a lot of training data from a 3D volume and mask
• guanine-crystal-analysis — A plugin for the guanine crystal segmentation, classification and characterization in the zebrafish eye
• harpy-analysis — single-cell spatial proteomics analysis that makes you happy
• himena — An infinitely extensible and reusable application framework.
• imaxt-multiscale-plugin — A simple plugin to use with napari
• in-silico-fate-mapping — TODO
• intracktive — Python tools for inTRACKtive
• lasso-3d — 3D lasso tool to select large 3D areas
• magic-class — Generate multifunctional GUIs from classes
• manini — An user-friendly plugin that enables to annotate images from a pre-trained model (segmentation, classification, detection) given by an user.
• morphometrics-engine — A morphometrics measurement engine.
• morphospaces — a library for creating and exploring morphospaces.
• motile-plugin — Tracking with motile
• motile-tracker — Application for interactive tracking with global optimization
• mouselungseg — YoloV8 model for the segmentation of the lungs in mice CT scans.
• mousetumornet — nnU-Net model for the segmentation of lung tumor nodules in mice CT scans.
• multireg — Registration of 3D multiplex images with one common chanel
• napam — A plugin that allows you to run macros (i.e. python scripts) on the images for any kind of image processing.
• napari — n-dimensional array viewer in Python
• napari-3d-ortho-viewer — Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images
• napari-3dtimereg — Registration of 3D movies applied to all channels
• napari-activelearning — An active learning plugin for fine tuning of deep learning models.
• napari-affinities — A plugin for creating, visualizing, and processing affinities
• napari-aideveloper — napari_aideveloper is a napari-plugin deived from AIDeveloper that allows you to train, evaluate and apply deep neural nets for image classification within a graphical user-interface (GUI).
• napari-aisegcell — napari plugin for deep learning-based segmentation of bright field images
• napari-allencell-annotator — A plugin that enables annotations provided by Allen Institute for Cell Science
• napari-allencell-segmenter — A plugin that enables 3D image segmentation provided by Allen Institute for Cell Science
• napari-amdtrk — Manually amend segmentation and track within napari
• napari-annotator — A lightweight plugin extending label layer control
• napari-aphid — A plugin to classify aphids by stage of development.
• napari-apple — Detection of apple based on YOLOv4 model
• napari-apr-viewer — A simple plugin to view APR images in napari
• napari-assistant — A pocket calculator like interface to image processing in napari
• napari-assistant-plugin-generator — Auto-generate python code from within napari to make napari-assistant compatible plugins
• napari-bbox-spfluo — A new layer for bounding boxes in 2+ dimensions. Fork of napari-bbox for spfluo-app needs.
• napari-bee-annotator — Napari plugin for the annotation of bee entering and leaving the hive.
• napari-bigfish — A napari-plugin providing an alternative GUI for Big-FISH. Big-FISH is a python package for the analysis of smFISH images.
• napari-biopb — Performing single-cell segmentation by visiting biopb endpoints
• napari-bleach-correct — A napari plugin to correct time-lapse images for photobleaching.
• napari-blender — A plug-in to help visualize and analyze organoid segmentation using Blender
• napari-blob-detection — Detects blobs in images
• napari-bluesky — A plugin for posting to Bluesky from napari
• napari-boardgame-maker — Make boardgame tiles
• napari-brainbow-diagnose — Visualize and Diagnose brainbow dataset in color space.
• napari-bud-cell-segmenter — A plugin to segment embryonic mammary bud cells and detect 2 RNA probes
• napari-buds — Random-forest automated bud annotation
• napari-caphid — Annotation of aphid and update table
• napari-cell-centroid-annotator — A simple plugin to annotate cell centroids in 3D images
• napari-chatgpt — A napari plugin to process and analyse images with chatGPT.
• napari-checkerboard — Compare two images with the itk checkerboard filter
• napari-cilia-beating-frequency — Cilia beating frequency detection
• napari-clemreg — A plugin for registering multimodal image volumes based on common segmented structures of interest with point-clouds.
• napari-clipboard — A plugin for creating napari layers from the System clipboard
• napari-clusters-plotter — A plugin to use with napari for clustering objects according to their properties
• napari-conference — A simple plugin that allows you to use napari + your webcam in video calls
• napari-conidie — A segmentation tool to get conidie and hyphe
• napari-convpaint — A plugin for segmentation by pixel classification using pre-trained neural networks for feature extraction
• napari-cookiecut — Fixed cut
• napari-cryofibsem-imgproc — A napari plugin for artifact removal, noise reduction, contrast enhancement and stack brightness correction of Cryo-FIB/SEM image stacks.
• napari-cursor-tracker — Plugin for easy manual annotation/tracking of 3D or 2D + t dataset by following the cursor.
• napari-curviewer — A plugin to unroll organs along their curved central line
• napari-czann-segment — Semantic Segmentation using Deep Learning ONNX models packaged as *.czann files
• napari-deepfinder — A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
• napari-deepmeta — Mice lungs and metastases segmentation tool.
• napari-denoiseg — A napari plugin performing joint denoising and segmentation of microscopy images using DenoiSeg.
• napari-dmc-brainmap — Image analysis pipeline for quantification of 2D mouse brain anatomical tracing data
• napari-easy-augment-batch-dl — A plugin to perform unet based deep learning with a small number of labels and augmentation