| Path |
Digest |
Size |
| lts_workflows_sm_scrnaseq/__init__.py |
sha256=AOhugnKGluBfyJddBmjCH8scgbTh3GgrwUhkRqO-isw
|
307 |
| lts_workflows_sm_scrnaseq/_version.py |
sha256=vNFqw3FWQlKn8pnRdvnBd41HhbrSDINC1xu1aLk4mJ0
|
497 |
| lts_workflows_sm_scrnaseq/environment-27.yaml |
sha256=bS34ORPVUjo_X6PkvYcbzXIRsiOdHilJto-Bv3ZyewY
|
93 |
| lts_workflows_sm_scrnaseq/environment.yaml |
sha256=BZq3f0LWnlb4Ex64TtvsB6hx_IEN_KaRKKrgnyEzohs
|
295 |
| lts_workflows_sm_scrnaseq/workflow.sm |
sha256=E7I5CHZu9hNp4Rs01qkYeN2CNYSDJ1mo6EzZzbhOhCo
|
5592 |
| lts_workflows_sm_scrnaseq/rules/main.settings |
sha256=OoUzkLsG52RFxnsfkAAU2LhZEcUR9RJGPIMlAmWwD84
|
3034 |
| lts_workflows_sm_scrnaseq/rules/ngs.settings |
sha256=6etA3vSncWS5NK6FJDbU41u7ENkJJvoccTCY4CjY4UE
|
1268 |
| lts_workflows_sm_scrnaseq/rules/bamtools/bamtools.settings |
sha256=3uCVJLck32GIdtRFSmIf1wa0f62B1PH9eC0yGGlaLyc
|
565 |
| lts_workflows_sm_scrnaseq/rules/bamtools/bamtools_create_filter_script.rule |
sha256=jbJ_8mFGNyq5RJbijnHk_XZWnUIGT7qlTnDTe70jYUw
|
593 |
| lts_workflows_sm_scrnaseq/rules/bamtools/bamtools_filter.rule |
sha256=9tUEmdyROF7iDoHN8gxqua35n04d8CtFJ-Y7NNDLlEc
|
757 |
| lts_workflows_sm_scrnaseq/rules/bamtools/bamtools_filter_script.rule |
sha256=Etxe1aP4FkKFG-BLehCE9uPdGtEOSgXMaA9oyRRsHuY
|
1033 |
| lts_workflows_sm_scrnaseq/rules/bamtools/bamtools_filter_unique.rule |
sha256=NX9RKi5NLW8gE7nXsj9OB7qugO881cb-nH0ytYYR6WY
|
792 |
| lts_workflows_sm_scrnaseq/rules/bamtools/env.yaml |
sha256=H7YQ2SguIY7qW6jHbDmQhZNYE-6vfFzvcTsHPjB7VY4
|
57 |
| lts_workflows_sm_scrnaseq/rules/bedtools/bedtools.settings |
sha256=1VH1meHZ5DsHY7NsgmWuIa2l_szoHMLi1HKPh0AqBCg
|
856 |
| lts_workflows_sm_scrnaseq/rules/bedtools/bedtools_bamtobed.rule |
sha256=l6KSKUzOLm5jTppyECHYMnCRdM2TFacZBcW_xzlf5j8
|
649 |
| lts_workflows_sm_scrnaseq/rules/bedtools/env.yaml |
sha256=An3HjcmhWremQiPABYjS-AkSlMTpdy9ezQDRnSwdmHg
|
58 |
| lts_workflows_sm_scrnaseq/rules/comp/comp.settings |
sha256=hvRRhWTieJT8mlmvlUzDyS8-j5aPkW1IvGpZJfwG2Vc
|
732 |
| lts_workflows_sm_scrnaseq/rules/ercc/ercc.settings |
sha256=88QUK6ND65OXwBt83zn2WeBdqgOWUV6NGtCjuKlWVEk
|
434 |
| lts_workflows_sm_scrnaseq/rules/ercc/ercc_create_ref.rule |
sha256=2h9wuPGD0fGcdwroLNjy67ZAoJ8K6HsWqoA5EFR5cKs
|
1874 |
| lts_workflows_sm_scrnaseq/rules/ercc/ercc_download_metadata.rule |
sha256=kGcg_rtp3-72nqP-PrhZ1k8cl_IpSN7Kyww3mBd1siA
|
481 |
| lts_workflows_sm_scrnaseq/rules/picard/env.yaml |
sha256=nBjEIZpRvRfxrFEvsF0r1apxN3aZqRvge5S6w48YJUc
|
55 |
| lts_workflows_sm_scrnaseq/rules/picard/picard.settings |
sha256=aGD5Zv8IXU7Pmn777O6A8esamaQWa4izxcO30zZSIrc
|
1616 |
| lts_workflows_sm_scrnaseq/rules/picard/picard_merge_sam.rule |
sha256=CpC8UL1Ffdw78igCWzexav9gXdH86jWqynwOhyfonlI
|
3555 |
| lts_workflows_sm_scrnaseq/rules/picard/picard_sort_sam.rule |
sha256=4kGct3XZNVjgdckOhBYh6gsfdS3mhPOWTtn2dof0T3U
|
790 |
| lts_workflows_sm_scrnaseq/rules/rpkmforgenes/env.yaml |
sha256=AYBUmLek3jkyszmcbh8l7YxmJvfkGiCs1wMoaNVHLHU
|
76 |
| lts_workflows_sm_scrnaseq/rules/rpkmforgenes/rpkmforgenes.settings |
sha256=23LYkLMfHNbgDdSFhe_fi4Wisl4fXre5E9kRSnvEC_g
|
681 |
| lts_workflows_sm_scrnaseq/rules/rpkmforgenes/rpkmforgenes_from_bam.rule |
sha256=FOj-SHdHJuT1-uRv1KKEtDl_3Oyqu5WWf-DBo2GO9JI
|
1335 |
| lts_workflows_sm_scrnaseq/rules/rsem/env.yaml |
sha256=mnTLtdwHe7CqTffdIHTRfbqxoTP7IDzuHlnQTPCFVd0
|
54 |
| lts_workflows_sm_scrnaseq/rules/rsem/rsem.settings |
sha256=x6C32LfeetwrvHXY47WSjnhJQoqLX4qJQhT_v90B608
|
1115 |
| lts_workflows_sm_scrnaseq/rules/rsem/rsem_calculate_expression.rule |
sha256=ivAk6cqJq5CDdO4m-PzQhoaqYPZeODafGLKJAQ-6DuE
|
879 |
| lts_workflows_sm_scrnaseq/rules/rsem/rsem_prepare_reference.rule |
sha256=vrOoJ6XUzfTAmJeoO0Iy17haYpwdciI2yIirqSuY4cs
|
1440 |
| lts_workflows_sm_scrnaseq/rules/rseqc/env.yaml |
sha256=rTgGXACF7EtYmvkan6-wNyXogJ5qOS2v4keVsZhtTLE
|
69 |
| lts_workflows_sm_scrnaseq/rules/rseqc/rseqc.settings |
sha256=LJNzlfedfd5fROQ-XDgCnGgetClwBktxiF9qGqL06no
|
759 |
| lts_workflows_sm_scrnaseq/rules/rseqc/rseqc_clipping_profile.rule |
sha256=agOcP6LDLNOzaAwKi0TIX7gcDE2uGsNBH5k9562bht8
|
732 |
| lts_workflows_sm_scrnaseq/rules/rseqc/rseqc_geneBody_coverage.rule |
sha256=9iWweCn1252avVq1RSFgKBw7NLl0SZml8J2Z_h7f4Ik
|
1339 |
| lts_workflows_sm_scrnaseq/rules/rseqc/rseqc_junction_annotation.rule |
sha256=kLZxds0opTNg4Fp7DAllHO-klV6F86NEYXL6oXfyY58
|
963 |
| lts_workflows_sm_scrnaseq/rules/rseqc/rseqc_qc.rule |
sha256=DJDfq353FmmnIorkGerK3QGxCzBQFZyIim7d_P3AdEY
|
1574 |
| lts_workflows_sm_scrnaseq/rules/rseqc/rseqc_read_GC.rule |
sha256=Kvm9EUahytg2VKrECVqENZZZbgC3bNklZxEMsI-6xt4
|
628 |
| lts_workflows_sm_scrnaseq/rules/rseqc/rseqc_read_NVC.rule |
sha256=FQvpW35C8ksiwVdfOyhWLr7LvKvxQMwgf9jGeC1LuMM
|
637 |
| lts_workflows_sm_scrnaseq/rules/rseqc/rseqc_read_distribution.rule |
sha256=rwGh1Xzm5Fago_8AZFeHf8MqxBx32SJLOggLBsCK240
|
869 |
| lts_workflows_sm_scrnaseq/rules/rseqc/rseqc_read_duplication.rule |
sha256=HRszLb7ISqlezQagrDp_D6Jm04SOJD-Fp06Gl8TeIM0
|
773 |
| lts_workflows_sm_scrnaseq/rules/rseqc/rseqc_read_quality.rule |
sha256=Q_6BVsej5s0ar2YIDuzEUjea0aVQjGMnMnYvhxn-8LE
|
668 |
| lts_workflows_sm_scrnaseq/rules/samtools/env.yaml |
sha256=KxsQPOl_MGVcs_c8eD70KltgN7lFhdjHZkzxvHfefvc
|
57 |
| lts_workflows_sm_scrnaseq/rules/samtools/samtools.settings |
sha256=Hn8dsWuSr3Oyx4rglAlpw5Moxo5bXdZLCpxdPCYWuO0
|
511 |
| lts_workflows_sm_scrnaseq/rules/samtools/samtools_index.rule |
sha256=A1ytClg6G1UJ9WA6pM3rtuxiEmGkv9aQzDk109rvZEA
|
606 |
| lts_workflows_sm_scrnaseq/rules/samtools/samtools_sort.rule |
sha256=oHd4rYGZ9DAoddN_fz26BwV-3fdvdKEwkbWFlnsBUHQ
|
685 |
| lts_workflows_sm_scrnaseq/rules/samtools/samtools_sort_by_name.rule |
sha256=TlmG5KqGvaq_4Vbh3msR-HIYdT_-BalLwqwX8Vzrmtw
|
651 |
| lts_workflows_sm_scrnaseq/rules/star/env.yaml |
sha256=j_EadN_0CkHfrdVkY1iv_zSoAy5Fvw7paxong3Jbfa0
|
54 |
| lts_workflows_sm_scrnaseq/rules/star/star.settings |
sha256=up_H03GA1UGxfUweu7oCjqZ0ASrdwNcdgimKuhZlTrQ
|
531 |
| lts_workflows_sm_scrnaseq/rules/star/star_align_log.rule |
sha256=cqOvta-mzVt61obcdzWYlB9B1QRL3Evu-RrCOUf2cwc
|
513 |
| lts_workflows_sm_scrnaseq/rules/star/star_align_pe.rule |
sha256=r1yU-w3uF9X8-Mhi6hYPPdscqXsRHAKLx6iqknWfShs
|
2175 |
| lts_workflows_sm_scrnaseq/rules/star/star_index.rule |
sha256=IKk37UQ5w6bqN3lXfAtziaBIJ77Hb4cMDtamEhw7njc
|
2091 |
| lts_workflows_sm_scrnaseq/rules/ucsc/ucsc.settings |
sha256=_YfFqLJYzprAVLNBnYHmUeZrBZtqJKVh6M_KM3Ah504
|
539 |
| lts_workflows_sm_scrnaseq/rules/ucsc/ucsc_genepred_to_refFlat.rule |
sha256=2v8oJ6vJqyOWVtnbadyX6TKQQnSrkipCd7MSq8RASyg
|
547 |
| lts_workflows_sm_scrnaseq/rules/ucsc/ucsc_gtfToGenePred.rule |
sha256=vk_rPKzFvRy3tQG-feP7C8pg6eGOk5FAGwDkrUfVrKA
|
854 |
| lts_workflows_sm_scrnaseq/rules/utils/dbutils_fasta_to_genbank.rule |
sha256=tAck33gwO8OcOr2olc3DPXDRx9tIKvbnBzdrA5x0Q-U
|
790 |
| lts_workflows_sm_scrnaseq/rules/utils/dbutils_genbank_to_fasta.rule |
sha256=VsvYVrfeAcONCFVOlcQsrK9aIQHDOxdnWM2lY-wyqD8
|
594 |
| lts_workflows_sm_scrnaseq/rules/utils/dbutils_make_transcript_annot_gtf.rule |
sha256=FZUEwvPh4qQz0w7apIRpUtFAMS00Q7AlN9zf_TuSN7c
|
2368 |
| lts_workflows_sm_scrnaseq/rules/utils/env.yaml |
sha256=jpTs0Zn0SNoN3dGEbEqHItZaKHVhYyKIizTeNHSl1Ig
|
115 |
| lts_workflows_sm_scrnaseq/rules/utils/gtf_to_bed12.rule |
sha256=PDF2fJGrA3wB4AhRd-DgCRUjGT_PLektzMKBZPRh1zc
|
789 |
| lts_workflows_sm_scrnaseq/rules/utils/utils.settings |
sha256=QkvRkoq3Wu4260C1CdojaQnHSlXJhjQAMzUvQQuPprE
|
47 |
| lts_workflows_sm_scrnaseq/tests/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
| lts_workflows_sm_scrnaseq/tests/conftest.py |
sha256=keYVGwISgATqWY9jT90uk8KsHp4JnPkRvHpQ5wupzwc
|
1196 |
| lts_workflows_sm_scrnaseq/tests/test_lts_workflows_sm_scrnaseq.py |
sha256=Vb-5TzCEYlUg5hLLOABTjse2fYQVkD0NOMAvCLXULgA
|
1820 |
| lts_workflows_sm_scrnaseq/tests/examples/Snakefile |
sha256=nxeRGBEUG69cEyjmGPUXoBb5zKMeNH5hpdr6OXUxrro
|
144 |
| lts_workflows_sm_scrnaseq/tests/examples/config.fmt.yaml |
sha256=vBwAXo3Rx4arxMb2Vf5kmrAkCNmfXfxtF7QZLvxyki8
|
67 |
| lts_workflows_sm_scrnaseq/tests/examples/config.yaml |
sha256=J9dZL_ww1FgUQEGvAcepDOUn4sYlfFkOzs_tj1aMVjk
|
2490 |
| lts_workflows_sm_scrnaseq/tests/examples/sampleinfo.csv |
sha256=nMRTPYq_kY1VOO6xnwLYjF9RfAL_uVicfvL_E94nvQY
|
37 |
| lts_workflows_sm_scrnaseq-0.1.0.dist-info/DESCRIPTION.rst |
sha256=-oywKVamMRb0isW8s53uzDmcTlea3OTjZgEBlU9dOn4
|
1020 |
| lts_workflows_sm_scrnaseq-0.1.0.dist-info/METADATA |
sha256=gYSu0dCmJuqoqDMgVzd5IfWeeCPr7seQr55KACWvAvE
|
1738 |
| lts_workflows_sm_scrnaseq-0.1.0.dist-info/RECORD |
— |
— |
| lts_workflows_sm_scrnaseq-0.1.0.dist-info/WHEEL |
sha256=o2k-Qa-RMNIJmUdIc7KU6VWR_ErNRbWNlxDIpl7lm34
|
110 |
| lts_workflows_sm_scrnaseq-0.1.0.dist-info/metadata.json |
sha256=lp_eMMeV6mzBRSHOZa190077Ka-1bNb75B8MMB-WGXI
|
909 |
| lts_workflows_sm_scrnaseq-0.1.0.dist-info/top_level.txt |
sha256=q_I3Q13ULK5V8W2I91MSBqrrT6dChLc5h3wtyCMmf0M
|
26 |