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linkageMapper

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0.87 linkageMapper-0.87-py3-none-any.whl

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Project: linkageMapper
Version: 0.87
Filename: linkageMapper-0.87-py3-none-any.whl
Download: [link]
Size: 123192
MD5: 43d965ae5793e7ee349cdafa34c735e9
SHA256: a863f941813dbae09115df642489764234ff250d3c62d4c4f181944757671750
Uploaded: 2019-06-11 18:51:47 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: linkageMapper
Version: 0.87
Summary: Genomic similarities per region
Author: Gabriel Araujo
Author-Email: gabriel_scf[at]hotmail.com
Home-Page: https://www.github.com/Gab0/linkageMapper
Platform: any
Requires-Dist: bio (==0.1.0)
Requires-Dist: numpy (==1.16.2)
Requires-Dist: Biopython (==1.73)
Requires-Dist: pycairo (==1.18.0)
Requires-Dist: pygobject (==3.27.0)
Requires-Dist: ete3 (==3.1.1)
Requires-Dist: matplotlib (==3.0.0)
Requires-Dist: scipy (==1.2.1)
Requires-Dist: ruffus (==2.8.1)
Requires-Dist: setuptools (==40.9.0)
Requires-Dist: reportlab (==3.5.10)
Requires-Dist: fastcluster (==1.1.25)
Requires-Dist: requests (==2.21.0)
Requires-Dist: pdfrw (==0.4)
Requires-Dist: pandas (==0.23.4)
Requires-Dist: xmltodict (==0.11.0)
Requires-Dist: Pillow (==6.0.0)
Requires-Dist: scikit-learn (==0.21.2)
Requires-Dist: IPython (==7.3.0)
[No description]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.32.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
linkageMapper/Pipeline.py sha256=7QVVlfEpvUH4Ran1sUtc8XeEbf101zTux6OThyPTKFo 5231
linkageMapper/__init__.py sha256=xyV7EeDcGAutl7gIBCk1OhVb3c9N1G-tTcTsWhDRky0 203
linkageMapper/compareHeatmap.py sha256=kXo5MhzjgSQyFcvKUsxyeLb-4QeOHBkwWB2aANalUwQ 987
linkageMapper/detectMutations.py sha256=nNswTN_qjUXqUkzjIYZfXbjNjFdIXKeHI_MTzsgcp2E 7680
linkageMapper/evaluateRecombinator.py sha256=kdzofrwC84wen4ssZk1MV1GEOjdT2Av2c4z2mHiJrPk 824
linkageMapper/fetchDataNCBI.py sha256=MDqLQEmWkWpIsIKH-W7uEdtoiX4-Vb0EKuP1BrHwiGs 13049
linkageMapper/graphic.py sha256=iPPQEsEto2VPAbOzPrehmxdOA060uYYC0fPR8MngzW4 51340
linkageMapper/initializePrimerFile.py sha256=YeRXtMLraRhltIcD99KGficLmb8X3bkcxjBnCvewi0I 2640
linkageMapper/logo.py sha256=Jjli--QcDxMFS7OPtJZCXCsBrabrrKeqaM27ksbvMp4 364
linkageMapper/makeMultifasta.py sha256=dV3ALjQhT96d43XtMviYD3YgZe13UIJuEWv-YHsdRm4 1515
linkageMapper/matrixAnalysis.py sha256=iyv_G0gBzA8I9AP6h-a7h83RkhY81QopADd7xD03rzY 6108
linkageMapper/primerFinder.py sha256=Jaskqwq9VcZFBxFlotWXBPCiHeBPasPyB8FZPxFFA-M 9747
linkageMapper/pyrMapper.py sha256=LqQOCzv-eQ5YFriTMhce9seBIgpyAjEKsAQWJ2-9f-Q 2479
linkageMapper/resultFileStructure.py sha256=4W8VliAYUP1KY2gLJ_YDy2TmcXYVm-PY7XikQD_bFwA 2
linkageMapper/tcairo.py sha256=Y4O9y_DQ3Zx_WbVsPWTEooat9BUPf_KXnWY9KhXb9LU 2105
linkageMapper/updateAmpliconScores.py sha256=vda7iVwAgtNoD2FTASk1Eu6JYQH5N-2cY6qUY53DLNc 959
linkageMapper/walkChromosomeResult.py sha256=hLmn3i5ydZFKW1T4iJbxTOb9rEIe95s_2fvz5pe7RQQ 20608
linkageMapper/Database/StrainNames.py sha256=5gJXWESbXYfVDedZx31xftUqG4sveyVbagOJLxhZydo 1070
linkageMapper/Database/__init__.py sha256=Akt5lVHtfO1O2YnEdvDLHYNirHQ9hb_hoUyQv7ZsJbw 59
linkageMapper/Database/annotationManager.py sha256=iF6NezIfQKiNQWF7rzJwz8Vhmj7bFQM70oJrjnToH2Y 3312
linkageMapper/DrawGraphics/__init__.py sha256=J4t_bhwEGKjrYXdMPF8tr7laA4NyP4t4YKJtG0we-es 50
linkageMapper/DrawGraphics/drawTree.py sha256=Tq5LKKWJ_6sDk99Zr3eTu20vU5OoyEBYuWYkhZg-qtY 579
linkageMapper/DrawGraphics/geneGraphs.py sha256=6hgp3Z9DyeMAHyxCbseikxDMbmd3nhCDSaSjH9tpGwo 5790
linkageMapper/PrimerEngine/GeneticEntities.py sha256=_-lHguaFb54kU88_0AvnLTvjKZ52puHyOqxOCqNJdME 3378
linkageMapper/PrimerEngine/PrimerDock.py sha256=AF8POEnFoYuTR1cbwCTdrQWenezPWyCVW3F23bwbL2o 9943
linkageMapper/PrimerEngine/RFLPMarker.py sha256=fFKO7jUJmtyqnJzvr6nUdhpMSL5rhCvVF2x_tz1cEJE 951
linkageMapper/PrimerEngine/__init__.py sha256=gHMDjnpdoEqYw1--Vk2f_ZEIrQpuRTrYXGmqdMMydgY 135
linkageMapper/PrimerEngine/ampliconSanity.py sha256=p8_J0b47N8h48Idq1MmSf-MNvBseTE7a0M-zFvmer6U 804
linkageMapper/PrimerEngine/bruteForcePrimerSearch.py sha256=0TSTZEn_yaVxCESpF2pzeJCrNqfKiB6qcsoDpk0o8_Q 7709
linkageMapper/skdistance/__init__.py sha256=vPqwqA_VQ_6W7MwlW0ltP0Hk8iTwfrSqGECN-K603NE 5627
linkageMapper/skdistance/_anosim.py sha256=m9rgJAuOO5xW0zBl6iL4b1G660sPPIra69Kf9sx8PM0 8566
linkageMapper/skdistance/_base.py sha256=RQ1a6WXq_BrSNcLQcqofHC1YrsXg2-hNCoT5pPH6KSY 44813
linkageMapper/skdistance/_bioenv.py sha256=47sTyaf8d7rwL01d3Y-tdep9Mv1FKEOlW3avO1mkN74 9482
linkageMapper/skdistance/_mantel.py sha256=Qe-oLZfAbDLF5dzrzk9YJZmOkL3sAZ2L8fkjYVwUfzg 19033
linkageMapper/skdistance/_permanova.py sha256=R9g3G2bEvQMJPlM4efJPH7lHasYHNbmncvR4e9MtNXk 5705
linkageMapper/skdistance/_permdisp.py sha256=u2A37QuS1a789mCVRv5dnCcB961JypM53Q7TGLRy3eo 10729
linkageMapper/walkChromosome/MatrixPlot.py sha256=pzfzoFbpHQ5GYdvTxuPAn7YKaCkYfwiNHtQnOHo0EY4 1658
linkageMapper/walkChromosome/__init__.py sha256=f5ok1lNPesTMneKDL58ejpyw8Tjg-MLcOJmsUpJiUlI 138
linkageMapper/walkChromosome/alignmentData.py sha256=OQw07Y0sIDgcxrEkvbb4tOI10lvLVFH0SVgSpZKQl7I 3758
linkageMapper/walkChromosome/dissimilarityCluster.py sha256=Je7aeObGqv893HEQRbvUsDvQf2gKn_S52WgXuFFF84I 8437
linkageMapper/walkChromosome/ideogram.py sha256=tGspRYcFFIncl2P6_0lcAdGyoTbUT8LTUwx_Dmv1uno 5551
linkageMapper/walkChromosome/mapBar.py sha256=VGF_XB0UXjPIP5LCi2iYvRy8fBs8d859lUN0k4L721g 2361
linkageMapper/walkChromosome/matrixOperations.py sha256=8OgS94HfwiLi0SotyEe5zDbXTc3aDm3uhG8U0WaLLXg 2142
linkageMapper/walkChromosome/plotViewport.py sha256=haNetSzreI-9jUocE2oJ28eLznRiK2pRNtNrin_rXOc 15083
linkageMapper-0.87.dist-info/LICENSE sha256=HO6MUgRzkhmrkr4AePbbQd8yQtqQ_whTAHUVZMyxEi4 1118
linkageMapper-0.87.dist-info/METADATA sha256=TdzfHCGcqc_H4dHMOTwH_BhF9vWp1M_XvcNhEAwN-lU 895
linkageMapper-0.87.dist-info/WHEEL sha256=MYFsq5fFBwF_oyJgrOoFmYYB1K6Sw7MxY-0897ZLbdM 92
linkageMapper-0.87.dist-info/entry_points.txt sha256=UJF2dlkk1DfoHhGncAFN2d6cPzEbfyLzZjirpIkkxpA 203
linkageMapper-0.87.dist-info/top_level.txt sha256=TRWSNuahOBMR7j9q5UnJg7FCA41X1VdkR4d3hOGDHJA 14
linkageMapper-0.87.dist-info/RECORD — —

top_level.txt

linkageMapper

entry_points.txt

[console_scripts]
lmdownload = linkageMapper.fetchDataNCBI:main
lmpline = linkageMapper.Pipeline:main
lmprimer = linkageMapper.initializePrimerFile:main
lmview = linkageMapper.walkChromosomeResult:main