Wheelodex » Projects » lbster

lbster

View on PyPI — Reverse Dependencies (0)

0.0.3 lbster-0.0.3-py3-none-any.whl

Wheel Details

Project: lbster
Version: 0.0.3
Filename: lbster-0.0.3-py3-none-any.whl
Download: [link]
Size: 907640
MD5: c620ca8d74b08a581ed51e938d5679de
SHA256: 319112d9b84ba6eab7a1fb98f4f03f8e2010ea20deab0c9a6ff848c2ccecbeec
Uploaded: 2024-11-14 18:13:52 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: lbster
Version: 0.0.3
Summary: Language models for Biological Sequence Transformation and Evolutionary Representation.
Author-Email: "Nathan C. Frey" <frey.nathan.nf1[at]gene.com>
Requires-Python: >=3.10
Requires-Dist: lightning
Requires-Dist: torch
Requires-Dist: torchmetrics
Requires-Dist: biopython
Requires-Dist: torchvision
Requires-Dist: universal-pathlib
Requires-Dist: pandas
Requires-Dist: scipy
Requires-Dist: pyarrow
Requires-Dist: s3fs[boto3]
Requires-Dist: biopandas
Requires-Dist: wandb
Requires-Dist: hydra-core
Requires-Dist: torchdata
Requires-Dist: datasets
Requires-Dist: tokenizers
Requires-Dist: transformers (>=4.24.0)
Requires-Dist: scikit-learn
Requires-Dist: matplotlib
Requires-Dist: seaborn
Requires-Dist: python-dotenv
Requires-Dist: torcheval
Requires-Dist: fastparquet
Requires-Dist: datasketch
Requires-Dist: peft
Requires-Dist: icecream
Requires-Dist: captum
Requires-Dist: pooch
Requires-Dist: edlib
Requires-Dist: onnx
Requires-Dist: onnxscript
Requires-Dist: beignet[all]
Requires-Dist: fair-esm
Requires-Dist: mypy; extra == "dev"
Requires-Dist: pytest; extra == "dev"
Requires-Dist: pytest-cov; extra == "dev"
Requires-Dist: pre-commit; extra == "dev"
Requires-Dist: ruff; extra == "dev"
Requires-Dist: ipykernel; extra == "dev"
Requires-Dist: selfies; extra == "mgm"
Requires-Dist: rdkit; extra == "mgm"
Provides-Extra: dev
Provides-Extra: mgm
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 9007 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.5.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
lobster/__init__.py sha256=AfmGd5xSlqzRLS1VoE0jwQ279DdZkaGit82_wjOvqRs 250
lobster/assets/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lobster/assets/ab_vocab.txt sha256=X4Bh1X3xPMLM4eo030cIQYQtLpH7BxK1WxhzuZ38pMU 150
lobster/assets/pmlm_vocab.txt sha256=NLPExa7eZLbdhKBUGOGncj8Mq-xj05VZcLMpNeBojBE 94
lobster/assets/protein_vocab.txt sha256=mEHsPiITx0FYq8Gdur0C1-z-qmvgYLy6xeGctzeDmC4 75
lobster/assets/3di_tokenizer/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lobster/assets/3di_tokenizer/special_tokens_map.json sha256=Ou3NQhHA1DrsTmB_9gpjJV8xdOrXlemXNQ8JpfjNnuE 125
lobster/assets/3di_tokenizer/tokenizer_config.json sha256=1a5jkYJU8dqefm1g35I8AjRjtbfJaCGiRYGkeOfh67A 135
lobster/assets/3di_tokenizer/vocab.txt sha256=KuB-qBfg40PPcRIRQ2E7c29llQNSGIvY3ICyn4P_8-A 134
lobster/assets/cdna_tokenizer/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lobster/assets/cdna_tokenizer/special_tokens_map.json sha256=Ou3NQhHA1DrsTmB_9gpjJV8xdOrXlemXNQ8JpfjNnuE 125
lobster/assets/cdna_tokenizer/tokenizer_config.json sha256=fpIiZ69-pEypHZsmkTdC9BuwbUKTSm-W4ZSYA2oiYNg 135
lobster/assets/cdna_tokenizer/vocab.txt sha256=SmwAdtAPPI_V6HhtQdcgYJ2Cb56O67FM4M-QIABX5Rg 68
lobster/assets/codon_tables/codon_table.json sha256=yhvEgqkCCooXhz7536tCbBNIxHImZrfZqU4rtwfhlYQ 1322
lobster/assets/codon_tables/vendor_codon_table.json sha256=BrwpIXb_ZcozRG484-SnAnc-YQWKrXlhkFO86Ru8iLA 2601
lobster/assets/concepts/biological_process_unique_values.txt sha256=_iZR4IujTaBUa7Ri7jjGWXMv7uaFIwEdTfovhIxCfDA 9594
lobster/assets/concepts/cellular_component_unique_values.txt sha256=zQ5TGABui759aM4BBt9tIMi66uzr_1o0J7WSe5PzUXk 9099
lobster/assets/concepts/cluster_name_unique_values.txt sha256=RYbKGdUyyiBIO-ewc3nISO23Cqk8lbPtTN1xIbhNT-0 5692
lobster/assets/concepts/members_unique_values.txt sha256=z8YSyvNErg3jQcSkNKE9_bRkTLteXqi28RLsFeVXVkU 28548
lobster/assets/concepts/molecular_function_unique_values.txt sha256=g3Owlh72KRb6ErKNdodhF-n_n-K27diqjGjSxjYNDxE 9650
lobster/assets/concepts/organism_unique_values.txt sha256=hTj8Smf0rp6r8hB0wsPsMLXdKZd8nEahZrkfSL2xyME 1623
lobster/assets/concepts/rep_id_unique_values.txt sha256=L_uhOTSiziTeC_a98fVeoUGibh-AgGdSigme9EJhszE 157540
lobster/assets/concepts/taxon_id_unique_values.txt sha256=xNTSMJfa8z5HliYUd0DtNLd1S720IxuHBAfwHXjsNmg 27447
lobster/assets/concepts/taxon_unique_values.txt sha256=KNFc9w2nSOVvjJ7zCHrE7cO8qKGNlRbKDfdZIC_qpKM 2044
lobster/assets/concepts/unique_identifier_unique_values.txt sha256=0LIbRqkXuoE6tOxJRP6BbKk6xxmVG7M82wLCWtug6HA 204929
lobster/assets/cortex_ab_tokenizer/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lobster/assets/cortex_ab_tokenizer/special_tokens_map.json sha256=gMOuJIP2TI-HUngE0KQ3XcLC6LmG2ldqrEDWelfJkv8 125
lobster/assets/cortex_ab_tokenizer/tokenizer_config.json sha256=Uyx35GkdVEujsRWKyjxkf4VVJOk-L2KIyka2BVDHBZo 138
lobster/assets/cortex_ab_tokenizer/vocab.txt sha256=_WdxNy2qz4ngpFMUy2qPtA2Yjy_N5vnJIXcJJEbcsB4 4121
lobster/assets/hyena_tokenizer/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lobster/assets/hyena_tokenizer/special_tokens_map.json sha256=XV2AV6HWGvJv4iEScbtgO-gq9cilYV7QLao4pdrGtdc 189
lobster/assets/hyena_tokenizer/tokenizer_config.json sha256=U5DYgNd5vJe866pGP8FYqS6p0Gh3kXC9EaO6O3Ih1rs 177
lobster/assets/hyena_tokenizer/vocab.txt sha256=yQv2nMh5UTL_AFHnboliR3WZt94N_Nur5--mQbe5OCs 66
lobster/assets/mgm_tokenizer/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lobster/assets/mgm_tokenizer/special_tokens_map.json sha256=XB80GTYUzg57kn4etkeQutPj_HGGILyxAW6cZwnZtg8 203
lobster/assets/mgm_tokenizer/tokenizer_config.json sha256=_-wzcTmgCYQPNVvE9ikP4jRKlg2zPoRYyKg_los1HwY 134
lobster/assets/mgm_tokenizer/vocab.txt sha256=OyMcB0Ri1bSjrUNVaSUUWsoSfyECjC7qmW36SBdqfnY 330
lobster/assets/pmlm_tokenizer/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lobster/assets/pmlm_tokenizer/special_tokens_map.json sha256=Ou3NQhHA1DrsTmB_9gpjJV8xdOrXlemXNQ8JpfjNnuE 125
lobster/assets/pmlm_tokenizer/tokenizer_config.json sha256=1a5jkYJU8dqefm1g35I8AjRjtbfJaCGiRYGkeOfh67A 135
lobster/assets/pmlm_tokenizer/vocab.txt sha256=NLPExa7eZLbdhKBUGOGncj8Mq-xj05VZcLMpNeBojBE 94
lobster/assets/pmlm_tokenizer_32/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lobster/assets/pmlm_tokenizer_32/special_tokens_map.json sha256=Ou3NQhHA1DrsTmB_9gpjJV8xdOrXlemXNQ8JpfjNnuE 125
lobster/assets/pmlm_tokenizer_32/tokenizer_config.json sha256=1a5jkYJU8dqefm1g35I8AjRjtbfJaCGiRYGkeOfh67A 135
lobster/assets/pmlm_tokenizer_32/vocab.txt sha256=x3dPihM9VAmvtxNjOiOjhYncFAhI0UYQhCP_VdPPIf0 92
lobster/assets/uniref_tokenzier/biological_process_unique_values_100.txt sha256=tns-BNqh3najbBYZ6wPPt0T0ltorPplZFGI5oIBvpOA 9594
lobster/assets/uniref_tokenzier/cellular_component_unique_values_100.txt sha256=4lyp6yMw0jSSVAJGwYrkSt_A-C7tz9KskJS30y5CzQQ 9099
lobster/assets/uniref_tokenzier/cluster_name_unique_values_100.txt sha256=YVhTm7EOMM9P5xlEbcd1A7jppxq1rm6AE8m8z-xj-uA 5692
lobster/assets/uniref_tokenzier/members_unique_values.txt sha256=z8YSyvNErg3jQcSkNKE9_bRkTLteXqi28RLsFeVXVkU 28548
lobster/assets/uniref_tokenzier/molecular_function_unique_values_100.txt sha256=qn-tQ5mV8l0wuGmMgCiq1Il5knIZXIUVw31uXm2Dw6Y 9650
lobster/assets/uniref_tokenzier/organism_unique_values_100.txt sha256=lzh_fdz6FkeM07heIwg23hxNgbDTFf81OGIQ9g4hJfU 1623
lobster/assets/uniref_tokenzier/taxon_id_unique_values.txt sha256=0c_IlYp5v37RUp5UwkGNoK2pBaf5_RSyQaZlB3WQ4s4 948033
lobster/assets/uniref_tokenzier/taxon_unique_values_100.txt sha256=ITSdeVCDuRaXhp38R1oKsFhPvs2LtSe3fdB8piZ9K8w 2044
lobster/cmdline/__init__.py sha256=AlH3K2H8cVzQqZQu_kxTrdNcUpZcvBI0y_UP8ZzKK4g 262
lobster/cmdline/_embed.py sha256=CVuEP6LA2D5Y60sJGth5F1EXkpzJ910sBodpfkMqBrI 1614
lobster/cmdline/_eval_embed.py sha256=uJ9o-WMMtBmzO7ivZtmw-rMe9peLkkKhpR7L2OvN14o 1804
lobster/cmdline/_intervene.py sha256=Ne6p9SbjkehTn1KCVhz5L5uHXYT6gJ-ZdBDBetN2OCA 13303
lobster/cmdline/_intervene_multiproperty.py sha256=2w7ktfTc2GKPDHTwdBj0VhFgJ-5A0xEktcFAlWQGceg 20785
lobster/cmdline/_perplexity.py sha256=XMS9s-L2eXt8TJVTKRZty4bZC1n9las68ay5tu96jok 4903
lobster/cmdline/_predict.py sha256=pW7w0o0AB5UoGTSVqo2WouUiwyYBx4yfEG5m9B6BB14 1461
lobster/cmdline/_train.py sha256=FunSaXzZWxYVO_3odr3aUYkSO9mmpht7yjrcrkD71HU 1972
lobster/cmdline/_utils.py sha256=Fs0pZT8ece80w7prh61KsOBj_fvIitPJR8nCLFVGn6M 1587
lobster/concepts/__init__.py sha256=Ijz2JoueSOoB0v5v2ReAx9zID2v2BG1PzvhSFhw7few 106
lobster/concepts/_descriptors.py sha256=HQX79uWkID0I_amIMwQh7ntEE792g6Ns202WcDFJb44 287
lobster/concepts/_large_molecule_descriptors.py sha256=xhuqxfxYKmYadO2Wk2G9rFLZPTsn_CsBzGyZ6AP-R5g 2691
lobster/concepts/_utils.py sha256=K-esV2JYic0Ri_vd5xwVdEP9OYnXWxB-21sHs6xZVJs 957
lobster/constants/__init__.py sha256=KFoAC4ikxJLJvkqSirQA7TF_0CjEDGQs-hlSup8_XnU 117
lobster/constants/_aho.py sha256=xzG3ayaPzhGe-NWl_6sBktGHMP7KVQKcGK1W08CCG30 1969
lobster/data/__init__.py sha256=Bnzm_8yGlFKubK_QPh3Jz8AZ0p1FUTnF8cdMLdgsIqM 877
lobster/data/_calm_datamodule.py sha256=39WE3uweP9FI_E18ag43pPF0RhA0YEx01P0L3k1GbLY 7908
lobster/data/_collate.py sha256=ZwY6TTK9IvhrL6hPe7T6aAfjF8ltq0x5eDDXAEBT9ak 5635
lobster/data/_constants.py sha256=oee76P8fSb3bK8DPW5SxplI2Q0QsNFXPpHxTYir3ZFY 177
lobster/data/_dataframe_dataset_in_memory.py sha256=PpsD0xSbiBJ53yhHcV9enr5WQd8cnEXYj9Fb_-hz2Rs 8973
lobster/data/_farthest_first_traversal.py sha256=y6zpskIUhqibdZ1pZrD3zZeLVHMKfKb9LY6sxpTR87A 4994
lobster/data/_fasta_datamodule.py sha256=1En3BopzMzvBhFcN6xILUz9QFU1RTJS2KiiuB30iBtM 9317
lobster/data/_gemini_data.py sha256=MpC0Z6C1fRa1EbmdlLv9p1cJ4YQ4aKM_wKiF53qX7F8 8773
lobster/data/_imports.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lobster/data/_minhasher.py sha256=yKjf4tMxNCSb9wnG5ziq18mAq-RecYX4rRE-X27W6FY 3841
lobster/data/_mmseqs.py sha256=3n1y9SsmkRGi6ARkT8J5gKzaWh6tZ-DzxKHO0Wg8HAI 6341
lobster/data/_ppi_sequence_datamodule.py sha256=MlL8qv0Np8FclZDYRW93RqzGO9r3_eHSDsRxGIh2VeE 5631
lobster/data/_structure_datamodule.py sha256=zA6nPL5SbZGQXV9lzsTuxzODC5rx6gFSSK2Z6nl7RwA 8469
lobster/data/_utils.py sha256=iI3lRwCIecUib7wAyITLTo-I_Yar2EcBXWmB7wfRxQw 2174
lobster/datasets/__init__.py sha256=ebApZ64TF1abZZaWHB2HFxgxcm7tcMvABzGi-2tz6eo 39
lobster/datasets/_calm_dataset.py sha256=J--NWEZ6m5p8s8SGwWXOeEtK5UPMdywI8erwTobAwLo 3501
lobster/extern/openfold_utils/__init__.py sha256=cqKBpA4p6d21xz2GLCaBVaL218XwWA60Dww-YDm4mQ8 614
lobster/extern/openfold_utils/_data_pipeline.py sha256=ALBSgOWwomS0Od22xYTnMs7KqhPaLfKdkZDyqW3Yd4Y 2459
lobster/extern/openfold_utils/_data_transforms.py sha256=zCQwSkmYtZobgtHqRK3SmvX-4iztCi-OYZ6AUq2iUBU 11353
lobster/extern/openfold_utils/_fape.py sha256=fsDzArZfDHlD5jLZtiSSVP7ciFVtFU80vuwwvV_q8cI 53759
lobster/extern/openfold_utils/_feats.py sha256=LSPVHXPl_OQlji2IekaRjE6PZY5JJUvSGKOlPxCABys 337
lobster/extern/openfold_utils/_protein.py sha256=7bMKXX8avzt7isiWdWwoCw2RkzZcc7M8V78RoRilQFM 5217
lobster/extern/openfold_utils/_residue_constants.py sha256=0quS3u3Fa_svUnxpqjF0qnrvqwnQzHkfQVnnMNK2TFo 16977
lobster/extern/openfold_utils/_rigids.py sha256=uKskAXyNMjtPoGIGcM7pOtTakN6RvjN6bVSlbbIClfc 42226
lobster/extern/openfold_utils/_tensor_utils.py sha256=Z6eGfFBltFgGyKcK3PwtSIaGdCS7xLXWxfo4HaA_zJY 1732
lobster/extern/openfold_utils/resources/stereo_chemical_props.txt sha256=JFEIme60kWfP_t7I-kU2Ok0IJ5wMY3pAO0UvfQrAlFE 9119
lobster/features/__init__.py sha256=4SS1gtErMz96XPIfT_Niv4ZyJCwMKJoRKdZaGgT_c_Q 60
lobster/features/_feature.py sha256=4aWOZzXtOMyC13a2fvtbOI6O5GW_ry3ayTuv9QwWepE 6371
lobster/hydra_config/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lobster/hydra_config/embed.yaml sha256=R_VowRAxewRdg1ovaQk9HMX-cWyOaVyjvncgUy1hZl8 216
lobster/hydra_config/intervene.yaml sha256=vi4qzW7orp1DGP760r0LIXinDpknzPUsBKNu7eCvyIo 768
lobster/hydra_config/intervene_multiproperty.yaml sha256=Tlf3QU72yKJJYK4HqIjoqGLnQHzNwg32w6_IiWTqP2g 727
lobster/hydra_config/perplexity.yaml sha256=fvoQ31BIApKn8XrLowYXQVq62oR0GND9bIol0Urwhu0 542
lobster/hydra_config/predict.yaml sha256=i55-cMlL7x2yATsTk1jTfHlC_5D5r_ty2He2FITLlVY 125
lobster/hydra_config/train.yaml sha256=6cbWz7fwsfUC5piZE-X44Gu9SAZPt2Up7HljBCj1g0Q 256
lobster/hydra_config/callbacks/base.yaml sha256=qKEYolvSeryL9u00mQxeaC3RCMFxMVxel3H1IrFdqpU 322
lobster/hydra_config/callbacks/default.yaml sha256=TY0VNv4GotGu5OU_KAKWPnLAjK76vlItPhdNOTtHTiE 29
lobster/hydra_config/callbacks/default_eval.yaml sha256=205RnR4_vpKFigWtZ7u30B-A22bJX4RXwkUXn99QMZY 145
lobster/hydra_config/callbacks/early_stopping.yaml sha256=luVWEDZGk1OP75B2dRnhipc9_ee9wced0sp56LArheo 126
lobster/hydra_config/callbacks/lr_monitor.yaml sha256=QhhknaSSXdDRch5bcWeQrpU_xPQGmgZHIPP7-fJZRL8 96
lobster/hydra_config/callbacks/model_checkpoint.yaml sha256=0fy_rnNCSPs8OcIpy_ORJK0CElIgZizaGQbFxXeomzY 185
lobster/hydra_config/callbacks/naturalness.yaml sha256=keVN8CKK7pLWCgv-TXHI8Z5fIpGP0x2Z7Dr089bNmLE 87
lobster/hydra_config/callbacks/progress_bar.yaml sha256=gEPgKqMVmpI0_b_l9f9gUnoFgD7fLwUap4RCq_9vOWQ 111
lobster/hydra_config/callbacks/timer.yaml sha256=i81FvGGIhTqJd_ggukLfDC0kMmLEQ5WU7AfYBq0CgZg 111
lobster/hydra_config/data/base.yaml sha256=T3gbKfm-wSvObv3A3I61HLur0J1DefTbNOALVCqIPHY 64
lobster/hydra_config/data/calm.yaml sha256=pIr_6Mc5CH65bkVFRAQWM6uKnv3Mg27oCzGzhDzr96w 188
lobster/hydra_config/data/cath.yaml sha256=a5dOgwENgdTw7veQHak_rLPW8borPg3PAJdfd7cDwrA 90
lobster/hydra_config/data/cmap.yaml sha256=-mPwXOZgiLmPe7JWKtwUOORdFTAMMTMMUhD0S09Z9W0 198
lobster/hydra_config/data/cyno_pk.yaml sha256=TPRyBnCZLvJtITxihm9PjENhLqiRoD0ACeEEk0zuGJc 211
lobster/hydra_config/data/fasta.yaml sha256=0yxK1i6Hcyyp8Tf6cQjXsuwEGKrAPYKYAOzCZitpzb8 198
lobster/hydra_config/data/gemini.yaml sha256=BHLHcG4EtxTaT3gTpL6PEfB0xAK-ZY9AHYOg8U7-hsc 137
lobster/hydra_config/data/ppi.yaml sha256=95fvAyNz4RNwQbKV811_0AQ0KAp9OVkR8eCSP-_U65U 264
lobster/hydra_config/data/ppi_infer.yaml sha256=s80TUA_Nv_lLYj7iEu0Sb91cgEMrTsjacSxlt6desCY 221
lobster/hydra_config/data/transform_fn/hyena_tokenizer_transform.yaml sha256=nLPeXA_OLK9KhcsSrYijQkNoocSH0nrqAVCZj0XVF_g 212
lobster/hydra_config/data/transform_fn/pmlm_tokenizer_transform.yaml sha256=Y0jzQWyJsCJb8Av3aANeJyWH_SiS30OJMPtHC8h03Eg 210
lobster/hydra_config/data/transform_fn/pt5_teacher_forcing_transform.yaml sha256=iaqy76ZH5E5-JGMETzfRC9HYsDZmQdXR2FibAX-9EWY 234
lobster/hydra_config/logger/csv.yaml sha256=WQVEA2P3z8KHhRlPWlpZq1QexYvxcCMrGs1E9SHacMY 59
lobster/hydra_config/logger/wandb.yaml sha256=yGKrAprPmZTBoB8rUtfsf87BMubsHDiiF3u97wY4dgM 151
lobster/hydra_config/model/clip.yaml sha256=zUO1HfV6dSE5s7aLLLgt3hK8D9HAZlaJJAPZV2CXUEQ 91
lobster/hydra_config/model/clm.yaml sha256=Uuje22Bd0tKpM1N_OGM-HnziJ8v_lmjRDwYNtwiKakU 243
lobster/hydra_config/model/cmap.yaml sha256=Xp6N0i6gC9z84TJZucILG7mZFRVnEygGR_trW7Isi2Y 154
lobster/hydra_config/model/gemini.yaml sha256=Ka7K5joGy4_JiX72BJhTbwbgYSq5VkM-8kSK9tCrICM 145
lobster/hydra_config/model/hyena.yaml sha256=YVjSyMipwjCNSKuKY7aBw6VOLOtkRrFUB-h-yX1N-2I 208
lobster/hydra_config/model/lobsterfold.yaml sha256=p_Qu9dy0PYKONN6Bhdgs4R9X0VG9mAHGQ4f9vgLX6Ww 88
lobster/hydra_config/model/mlm.yaml sha256=3bVKYMNXKdtSbSB4idfM80IcS8tdrk0lfR-nQHliPTg 225
lobster/hydra_config/model/mlp.yaml sha256=w9Lwfk9GZYCqwS9NOLxrLCL51v8D7Qrjs2tsRwmFFkw 213
lobster/hydra_config/model/ppi.yaml sha256=PtOHOVbBAJV9Z25oJw9FUhDT17XxuSnKTTxY0yqbTPM 146
lobster/hydra_config/model/seq2seq.yaml sha256=obYjgA687C80Bagh8Y26lLn2f7LTsdO3FYWdi0Y17_A 174
lobster/hydra_config/paths/default.yaml sha256=E_mh6dW-J0yN1xZFOd9Dn5F85N_50nbFcIoS4U4cbhU 109
lobster/hydra_config/plugins/base.yaml sha256=xnmO68Rr61vfk3CcafqxnS79CWDhQaofST3BLcG6fvE 43
lobster/hydra_config/plugins/bitsandbytes.yaml sha256=cm8l5DIRccJx51OxB-XA1OmH7wNRJiBhN_WTWZAILO4 125
lobster/hydra_config/plugins/default.yaml sha256=4ZA18evK1dnzK5NlPA5yIutiTV2FCVqnVHOUWRd4mZY 30
lobster/hydra_config/setup/default.yaml sha256=giU3YPuXJRcT_TgnTjyQjPmkFNAuzFkIiYNB7UWTJRw 46
lobster/hydra_config/setup/seed/default.yaml sha256=lmrMmkyhlehJTl-Xk0rQnC9glfDr2EQoXegfUB6_Cd8 73
lobster/hydra_config/setup/torch/default.yaml sha256=O6icfY8qQXP5XJoo3giRhLiN1oCU68mczeRw4nt-wwQ 63
lobster/hydra_config/trainer/default.yaml sha256=YCttoJ8ml3Z62jXUSKqa4waC8F_c-Pb6qvUAzjk_PDg 309
lobster/metrics/__init__.py sha256=DsbZLIQASUpXX5d3BFT8i6jvxasYsP1Ih_Z_f1Sjqfs 76
lobster/metrics/_binary_classification.py sha256=FqA2f1xAcR3L3uFSzS-U9er303up83NW1iyf7fHz2H4 1952
lobster/model/__init__.py sha256=d5a9MfYGn0GzsfpnyzmiSAqYRrmSgRpY7JY3FhOV3rs 779
lobster/model/_cbmlm.py sha256=jkSOezKfOF-1x12WmBdXiz61EZOy4qUvB5FzFB-O7ws 23109
lobster/model/_clip.py sha256=pIRP17JKVgy7pRqkjb0zy0wmp6FzunYD19m68HBxtto 5477
lobster/model/_clm.py sha256=jUzUd9eF2D8TgSAVYFSgCJowENTrIrKI9q5K_GToWZY 9351
lobster/model/_clm_configuration.py sha256=fUL4OMOiuSVf2nOhsUWz-RSCaW9XWPLwyuRZh01lRPs 1333
lobster/model/_cmap.py sha256=0P2oaHMWkhr8s81ORZkGgCh-Aa37JrgDlOIH8KCixGk 9357
lobster/model/_conditioanalclassifiermlm.py sha256=zQyCltzkhbo9sZRG0FtGUd8Hez1TflVkFhOdTV2mGNo 16253
lobster/model/_conditioanalmlm.py sha256=YUdvL-9ozQ5VPhhkq885NwGCyczNaDBaE8zU46GSP4Q 13597
lobster/model/_gemini.py sha256=fD6mpgNSUj1zR7QepN1OJC3YHIyOVnI4rs4XB31pqeA 10381
lobster/model/_linear_probe.py sha256=U6loNbRvpQ6PZ0OCGn9psJJHtomSBIXgQg4rZhnUvpI 9096
lobster/model/_lobster_fold.py sha256=qkKIveyFX6Jm1biEqao3XxXIqOd4GJWqiXrZ3F8Z_yQ 11105
lobster/model/_lobster_fold_base.py sha256=EutBYFxS-Q7CodoSRy75xNa1e8nnULLdU5VDID0JMoA 14331
lobster/model/_lobster_fold_configuration.py sha256=Dew3jeUwQkWPmG6bcU4GUND0ydxDu1J8y2P6teVT2sw 12644
lobster/model/_mgm.py sha256=zuktNmPgKYw5FfOg3463grAF4iy0HNn8B7QLqFlb-Bg 15124
lobster/model/_mlm.py sha256=8w-OQexuojCu3V9lszKaW78pftxHRkqDehQygKeCQ1w 14798
lobster/model/_mlm_configuration.py sha256=4jolv5o9dTjEgMEa-jzprWep9sUQ8AOrbQSDT1Y14KY 8827
lobster/model/_mlp.py sha256=SN2lD48Ud41qp9hWEuzvGLAt89Jnv4KvJdjKQ6hojwg 16395
lobster/model/_peft_lightning_module.py sha256=COfP--rnHBds1StLlTR8GWBWPALlc3meKMlrNcwL87U 1810
lobster/model/_pooler.py sha256=BX6Y7Nz8Qh25cvNf76WNo5pDqnGikElwCvgBs0n65_o 4317
lobster/model/_pooling_layers.py sha256=Dg7RVE3khrbE1xuuLVZzKmp9gS_WcEVBh4DdXt7E5_4 2688
lobster/model/_ppi_clf.py sha256=SnRMaIxNKxc3xWF2qgsNC5sqJbNlFkBjZH9trS2rdjY 7012
lobster/model/_seq2seq.py sha256=rULNe_QDFKhlK_joW4X69t6bxvIiZlw7QkfQ-8MOVik 5207
lobster/model/_seq2seq_configuration.py sha256=LvU5FgVpNi9cSmkLFRQctATa-D52b_q4AfbjuFY96NY 7164
lobster/model/_utils.py sha256=STuokWHauhl-MyyAUu_coOsre-P1gvTcc2rodCnEj6c 697
lobster/model/hyena/__init__.py sha256=reqmf8zEeH_NVZRy988XsyhMBy6EgtheUW0eOd0jzN4 36
lobster/model/hyena/_hyena.py sha256=jy7JfXuLrEggvBSlyPvymiPFBvSOg4W2Rb4j4SJ2mQI 6393
lobster/model/hyena/_hyena_base.py sha256=34Xufigx7rn82E6NLtxkgO0-uk4BUpnNiaT20ANFtEs 22851
lobster/model/hyena/_hyena_configuration.py sha256=tMN89ldBLfkrWio-BPO5a7v9JUqp7r45ovMNSn6jEPA 3555
lobster/model/llama_base/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lobster/model/llama_base/_attn_mask_utils.py sha256=vXDGBY7_D2In7vEAimVPB58mr-qFGfd87G-28KFVE0I 10480
lobster/model/llama_base/_llama_encoder.py sha256=NITzhIHB9oxXvfIBvwH5wRRxVCkrSxSBy0I3cD3JZro 8430
lobster/model/lm_base/__init__.py sha256=028wO0fLhnzas0JkCRTdQWS2PgsoLBhJoXFg-UyzPlo 189
lobster/model/lm_base/_lm_base.py sha256=X4JuOSXme5gBQ8LB847rEeGUnim0sl94EojKpVcq_JI 95559
lobster/model/lm_base/_lm_base_heads.py sha256=5E9TTDkwyjwWtC9RK0s_y_5NJ86gHM0MSy9dyFB3vFA 1895
lobster/model/lm_base/_utils.py sha256=9-PfQxFhMuUUp9fNk8BtUQybgbRiJtlZnnOcPDSccl4 9507
lobster/model/openfold_utils/__init__.py sha256=NLO4HXtpApRCGZ8CmdYhuXLE57r25S5SVwZOKQx-XXQ 614
lobster/model/openfold_utils/_data_pipeline.py sha256=jVf3-5Jy3XuteOWkSawk_WI9pOr1BUn-_MUpSYYf8R8 2439
lobster/model/openfold_utils/_data_transforms.py sha256=8tsoSVpjk-w5X0xanT7NG9cZZfHIXsB6SzEeGbWdoJM 11626
lobster/model/openfold_utils/_fape.py sha256=WlgLhY3kY0yzVCaQedtgBkHwkBPLihJGwJ3Fw67tiVg 54308
lobster/model/openfold_utils/_feats.py sha256=0TduG3ix51hKyd-92_nv05APLIAs8qZG_BBSY53G7Rs 322
lobster/model/openfold_utils/_protein.py sha256=tlgiHha6R2rBRTyYgGseIJ_wgBnSz-bdT4IC2vsOCVA 5329
lobster/model/openfold_utils/_residue_constants.py sha256=Vk6T8RquSuqxtX58R0IPJzk1bSt9XOzhr_ZzGItvD_s 17457
lobster/model/openfold_utils/_rigids.py sha256=qnNcGqYn46bipygAZd5R7FOdttJsYUjFv64dRNiG1kY 41459
lobster/model/openfold_utils/_tensor_utils.py sha256=lSgJjiLXbksvEXa_2uvd3u_WgZsn9nSgNkSnVUSOjk0 1727
lobster/model/openfold_utils/resources/stereo_chemical_props.txt sha256=rh3y1aOOo282e2uU0S4GWS0L0xKPNo6ZFo55wlyRUrs 9118
lobster/tokenization/__init__.py sha256=uRkqnPAOW-7fbixwoMHPfkNc4v16PkQ-8SsaQ4RhSeM 593
lobster/tokenization/_ab_tokenizer.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
lobster/tokenization/_cached_bert_tokenizer.py sha256=1JFkPCxC8IIP32mtocNw_ETeKTZisPm7GQxmQKpm4f0 2656
lobster/tokenization/_hyena_tokenizer.py sha256=s1vRLFvMmjBrbkwI4MJFMRKSGYHJn4HPRKpH0Cj2_U0 4633
lobster/tokenization/_hyena_tokenizer_transform.py sha256=QNGqrNBLGxPsKWN9UI-1sF2vRxvg6GyMljKFTHceYNE 4453
lobster/tokenization/_mgm_tokenizer.py sha256=N9Jgfr05CNifKUrY1bk3hkMd6y1mnBmpXrA6KT1iOHw 6171
lobster/tokenization/_mgm_tokenizer_transform.py sha256=IDXJbs5Xn07UFbJdsZ0Fnd2e5HHgby6jGgWMdc8yls8 24894
lobster/tokenization/_pmlm_custom_concept_tokenizer_transform.py sha256=i_UVpGpmh0fZr5-okxL60lG6Q21_GI44zq0COH27ZAA 8882
lobster/tokenization/_pmlm_tokenizer.py sha256=QlodesQW5ewYClrASqfR1uixmcaU4o5n3RG-HK5HEIA 18407
lobster/tokenization/_pmlm_tokenizer_transform.py sha256=KXqHaR_VjzCqjX7nH5VwOE9uIt3fvbShnsCV_ICdr0w 17852
lobster/transforms/__init__.py sha256=mri4_Fi6ZBri2yk54oqwTZgSdbsf55tp6I9_Pr9RAkQ 973
lobster/transforms/_atom3d_ppi_transforms.py sha256=WIquGAEgzZ4CGysWScl8UEzDRsPZHNrE49-CNIx4MdI 5917
lobster/transforms/_auto_tokenizer_transform.py sha256=JAQmEdo9-xFErlmklYZbE5xtJ3sYcpv4kcJv652nnj4 2920
lobster/transforms/_binarize.py sha256=wa89qfko1Emf0pz2CZBLoxGltzEWAc_XoHoAyEKrGBI 509
lobster/transforms/_convert_seqs.py sha256=r8fDkhWsuuqG-cnC9at9rLs5iysBSDP3nXBewxYzk6g 3931
lobster/transforms/_lambda.py sha256=fcenoLJ7_FIlT_scgiEmcucEyRB6qn1doB9kVZruvR0 1729
lobster/transforms/_structure_featurizer.py sha256=LbNhQ1YOfh5qMkW0ltUZ1qTD2P2TUQfNpUoaMalAmDM 4285
lobster/transforms/_transform.py sha256=JcJh-oRqtv3DuEaziXv4Lag1YqYfzt7qoHYapNCGLb8 5821
lobster/transforms/_utils.py sha256=7HqANzQ6XWC4fjF_Bg5eklIOH3jzg4d81iLT7mqAYR4 674
lobster/transforms/functional/__init__.py sha256=Xyqcr7NyHOc3BOeQdH5frbtC0khc5hkJ2WPmS8Y0f_8 137
lobster/transforms/functional/_biopython.py sha256=YmeVUAEjzQoFQbrhJvH4YIebA3gK5BVN3BfaEZSy4Sg 959
lobster/transforms/functional/_graft_germlines.py sha256=HFT42_zsXWs6PnC5ldOMunbdQ8Dap9brP_f1KnusRgw 4935
lbster-0.0.3.dist-info/LICENSE sha256=UOZ1F5fFDe3XXvG4oNnkL1-Ecun7zpHzRxjp-XsMeAo 11324
lbster-0.0.3.dist-info/METADATA sha256=A_2z3I8zCACGq5vQYtOUgiGR10Z4PkItP4pO1eaE2jU 10496
lbster-0.0.3.dist-info/WHEEL sha256=R06PA3UVYHThwHvxuRWMqaGcr-PuniXahwjmQRFMEkY 91
lbster-0.0.3.dist-info/entry_points.txt sha256=yEWe-E4kZxT-yA57vcVoo3-d1RsiO3ppTA_Uci2L614 346
lbster-0.0.3.dist-info/top_level.txt sha256=jmGYSEBksnqmEURRun2Ncnt7OQjm5xFwkUK9MeQ-rl4 8
lbster-0.0.3.dist-info/RECORD — —

top_level.txt

lobster

entry_points.txt

[console_scripts]
lobster_embed = lobster.cmdline:embed
lobster_eval = lobster.cmdline:eval_embed
lobster_intervene = lobster.cmdline:intervene
lobster_intervene_multiproperty = lobster.cmdline:intervene_multiproperty
lobster_perplexity = lobster.cmdline:perplexity
lobster_predict = lobster.cmdline:predict
lobster_train = lobster.cmdline:train