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0.0.4 kolossus-0.0.4-py3-none-any.whl

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Project: kolossus
Version: 0.0.4
Filename: kolossus-0.0.4-py3-none-any.whl
Download: [link]
Size: 34069
MD5: cff43709f0c8a1d8d3bd64ec820f17f6
SHA256: ea42c2ad00d9b38a4fd931ac7c219808ee94a7e46d7113a8c1ac21d71c26a6fd
Uploaded: 2024-10-24 16:40:49 +0000

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METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: kolossus
Version: 0.0.4
Summary: Predict kinase-substrate interactions.
Author-Email: Aditya Parekh <aditya.parekh[at]duke.edu>, Kanchan Jha <kanchan.jha[at]duke.edu>
Project-Url: Homepage, https://github.com/rohitsinghlab/p_KolossuS
Project-Url: Bug Tracker, https://github.com/rohitsinghlab/p_KolossuS/issues
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Dist: setuptools
Requires-Dist: numpy
Requires-Dist: scikit-learn
Requires-Dist: PyYaml
Requires-Dist: torch
Requires-Dist: biopython
Requires-Dist: h5py
Requires-Dist: transformers
Requires-Dist: fair-esm
Description-Content-Type: text/markdown
[Description omitted; length: 3104 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.2.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
clinvar/src/build_variation_database.py sha256=V1FrO4sI2zIrYtfkcOJvpWIy3bnWXcMWMk2MpLTGTvg 2013
clinvar/src/clinvar_xml_parsing.py sha256=U6ojdDMm2BUCuVbWPOPmcx25JbBsKQuD5oDb9UvT84k 1361
clinvar/src/fetch_wt_and_mut_seqs.py sha256=hFnfXb8RHxOeRMuf1AxoGr9u2vXNS3sx7uZnk23xE38 5464
clinvar/src/filter_based_on_kinases.py sha256=Roa3NbUnwlVn6SMNSG-8KEB9fEPmps_yCQ7bAbY3Tto 2723
clinvar/src/make_sequence_dataframe.py sha256=tZqDIrC0dFNNtnB0Dtx0t5ELjlnmZh7CrJO5E0gdufo 702
example/soderling_data/verify_results.py sha256=tVa-OU_NY0Q8UXQteF-i7V1nNc4wLaFZ9Sr5CFrp9qs 1157
example/toy/make_test_data.py sha256=TOBKGUR03vQyWOQJ_QA2TK0XU_5zVAnxjo8-jSalRyA 1666
example/toy/run_model.py sha256=iNLF5_3Semwfrvvt9cp3JNGBEjF1EQzQnC0biczolQU 290
kolossus/__init__.py sha256=V0-Z-qcGLhFkhmupR_o6Rv4DY70ftFouzrB0s4IkNyw 211
kolossus/extract.py sha256=8F0hyZu4C4jR8QLTFUXVjs0kUEDermrRsQt7hPHGTQQ 882
kolossus/kolossus.py sha256=TyrYmnyrWQo4iErGx4KogP-_v_lAAzpC-MRwrTVK6pw 3929
kolossus/main.py sha256=8gWmKaYZ_oybm6WJHVS7BICnGgjuVGyUwchgFJvEFo0 3134
kolossus/panel.py sha256=pf8D-zI-uEnI6X2rbCzx1Wqjl41TBxrFnHZf_h0N9k0 5090
kolossus/aprkh_utils/__init__.py sha256=GDG8KwPlhueOqXKnI77ZDeBSbRixTUWsg6V1angjy_4 233
kolossus/aprkh_utils/listops.py sha256=jXfA5PNQkexuikV6cvUDW58J6RVZDKyqqRlwjhr9_jk 673
kolossus/aprkh_utils/seqio.py sha256=cZM71RPu3Q--BfTAYAsX1pMWAYZ8fCVJAOlaWZFsGL8 2297
kolossus/aprkh_utils/stringops.py sha256=GK31LE2VQgnk5C7rYWcmjuJE7O3f6uZ337WHmZjVlg4 1480
kolossus/aprkh_utils/decorators/__init__.py sha256=MTKH7v6EtdiYHik_ayduqE-HVxY686-FIrnUtTkq3jA 164
kolossus/aprkh_utils/decorators/batch_utils.py sha256=xZlUxN5tcGdHiy6ZgKWU5IoDPYLtA2PqTYABRa15ZWs 806
kolossus/aprkh_utils/decorators/time_utils.py sha256=SSKzXFOUQe-s2fg_BP15UeDKSAIyIksTCShCyrzg6w0 1192
kolossus/aprkh_utils/misc/__init__.py sha256=QQROZhHlssX2OzQFR5Q8CGZzDgtzDwtHIm6C8cUKM-8 38
kolossus/aprkh_utils/misc/codon_table.py sha256=IiPOJm756pNUgTnavFFVgiiWAGNllfiLw7DkT8BjI-E 1729
kolossus/models/Network.py sha256=zpeheeNvNEsb35GCLdTzdnB9QHHP5V7Kjf5E250KJ4U 2016
kolossus/models/__init__.py sha256=12XsePc0m2sSxmjNqSY2QUoHC8Ls0EMgtvD4GMgj37k 103
kolossus/models/load_model.py sha256=_GvLT4b8lSM9FcQtyiHVbKllbA8KXXJLtPuWI4gIb7E 637
kolossus/utils/__init__.py sha256=g-EWW5vnNDH_dw7b657zwUZIVgDXFBWphhwnVJGbDW4 423
kolossus/utils/batch_utils.py sha256=Z-jTSQVu6L2KzOKxnd8hXr2k7ndopx-GJUC9HYXL-lQ 1299
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kolossus/utils/write_fasta.py sha256=OugASdgLzekqd6XTVdPV7pdOMSEIbC_yyKzclXIthf4 620
logos/src/create_logos.py sha256=7BTx87qxcuFlN2c2nT0HXqsY36TSqjdeadFdjSJrHmo 8810
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kolossus-0.0.4.dist-info/entry_points.txt sha256=fJn9Ai5O1UJ7ZK4Zno1n510BH17jzZVTe03Ns4cX7To 130
kolossus-0.0.4.dist-info/top_level.txt sha256=ES4xTpUVduIWJcVUEXCgNTN_GFYzWan0WVixuWZCOz8 31
kolossus-0.0.4.dist-info/RECORD — —

top_level.txt

clinvar
example
kolossus
logos

entry_points.txt

[console_scripts]
kolossus-cli = kolossus.main:main
kolossus-extract = kolossus.extract:main
kolossus-panel = kolossus.panel:main