Path |
Digest |
Size |
kazu/__init__.py |
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|
22 |
kazu/py.typed |
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|
0 |
kazu/annotation/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
kazu/annotation/acceptance_test.py |
sha256=R8qp-YMM-J6ZFZ1V76bTh24BUgvUjhi-VbNhnjz6dlw
|
14723 |
kazu/annotation/label_studio.py |
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|
26353 |
kazu/conf/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
kazu/conf/config.yaml |
sha256=ec1_PgghqfF7MKqIiIicwTUJD7KvfI_QOP-InuMrMbk
|
2247 |
kazu/conf/AbbreviationFinderStep/default.yaml |
sha256=bneOFbJ1elkY3UfZITgIT79pSEHs1i60YzKWQfIiWK4
|
150 |
kazu/conf/CleanupActions/default.yaml |
sha256=K8sQQ5gDUTQdozrzY83EAMGRcQsMZyExbDsuVBshcdE
|
583 |
kazu/conf/CleanupActions/uri_stripping.yaml |
sha256=E2cxUW-mTnQYJSDON4awVLykHZFg4_peef-OhtjZgUY
|
389 |
kazu/conf/CleanupStep/default.yaml |
sha256=M4EdQsE3pt0ZAnnCSWE7Z2bgTcTTdmHhM9CSkXkDgcs
|
99 |
kazu/conf/DictionaryEntityLinkingStep/default.yaml |
sha256=uj0881049KSUcg20dqpbllm3xNTTloZLleD4mPEuwtA
|
406 |
kazu/conf/DisambiguationStrategies/default.yaml |
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|
2393 |
kazu/conf/EntityClassDisambiguationStep/default.yaml |
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|
200 |
kazu/conf/ExplosionStringMatchingStep/default.yaml |
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|
206 |
kazu/conf/GLiNERStep/default.yaml |
sha256=e7Bxbe6RV8idPevUF06tdIobbOQGs5C1qtRhFXQxqIY
|
198 |
kazu/conf/LSWebUtils/default.yaml |
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|
51 |
kazu/conf/MappingStep/default.yaml |
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|
13597 |
kazu/conf/MemoryEfficientStringMatchingStep/default.yaml |
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|
156 |
kazu/conf/MergeOverlappingEntsStep/default.yaml |
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|
241 |
kazu/conf/Middlewares/default.yaml |
sha256=OQ1LvVR_BkrhKvLEH8r6mxPeLGdIvPSqcEz2atl2PG0
|
77 |
kazu/conf/Middlewares/jwt.yaml |
sha256=8ZW0bOMlW6QxIpFmngElVWHqsiFkvGCIpHd9hFuaugo
|
809 |
kazu/conf/OpsinStep/default.yaml |
sha256=Tm8zzDaVCiOZmp18y5WmvXOdBgeevPyXWf0ZLwCzZrE
|
265 |
kazu/conf/Pipeline/default.yaml |
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|
855 |
kazu/conf/RulesBasedEntityClassDisambiguationFilterStep/default.yaml |
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|
1701 |
kazu/conf/SapbertHelper/default.yaml |
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|
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kazu/conf/SapbertStringSimilarityScorer/default.yaml |
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|
174 |
kazu/conf/SciSpacyPipeline/default.yaml |
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|
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kazu/conf/SethStep/default.yaml |
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|
266 |
kazu/conf/SpacyNerStep/default.yaml |
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|
79 |
kazu/conf/StanzaPipeline/default.yaml |
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|
135 |
kazu/conf/StanzaStep/default.yaml |
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80 |
kazu/conf/StringScorers/default.yaml |
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|
665 |
kazu/conf/SynonymGeneration/default.yaml |
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|
5526 |
kazu/conf/TransformersModelForTokenClassificationNerStep/default.yaml |
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|
1194 |
kazu/conf/autocurator/default.yaml |
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|
3081 |
kazu/conf/cache_sizes/default.yaml |
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1067 |
kazu/conf/confidence/default.yaml |
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|
699 |
kazu/conf/global_actions/default.yaml |
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143 |
kazu/conf/ontologies/cellosaurus.yaml |
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|
833 |
kazu/conf/ontologies/chembl.yaml |
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836 |
kazu/conf/ontologies/cl.yaml |
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|
814 |
kazu/conf/ontologies/clo.yaml |
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|
766 |
kazu/conf/ontologies/go_bp.yaml |
sha256=6fMQF2JcaHK52dhwC-81FE8kbXb-mbYKT-3L_Rc1fI8
|
853 |
kazu/conf/ontologies/go_cc.yaml |
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|
853 |
kazu/conf/ontologies/go_mf.yaml |
sha256=VSryelX8Er-FaqruBCb7bAdarJP0Sos6-qekqhYJupk
|
853 |
kazu/conf/ontologies/hgnc_gene_family.yaml |
sha256=lkPFoLt93lvUQPkI6WR9PnhsjMlOQkC6n5-ALZ3e7WI
|
1263 |
kazu/conf/ontologies/hpo.yaml |
sha256=p4TsIpTioZ4n71twvut3kUYqBXL6cjXFJ2_rONCzkns
|
1296 |
kazu/conf/ontologies/mondo.yaml |
sha256=q75ODXN0oCh98O1MrotKJiP0dCM-ae7Xz_Wo7FjAh6Q
|
832 |
kazu/conf/ontologies/ot_bio_proc.yaml |
sha256=mrFkpZ_9TmUpSSYsuvMPhBHq3SSLDIiZn1lt2q_CL1E
|
986 |
kazu/conf/ontologies/ot_disease.yaml |
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1432 |
kazu/conf/ontologies/ot_measurement.yaml |
sha256=tdaqEarif9arj-69WpsMt3vxiJYdgaeqPMegHqtRiUU
|
985 |
kazu/conf/ontologies/ot_medical_proc.yaml |
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983 |
kazu/conf/ontologies/ot_molecule.yaml |
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916 |
kazu/conf/ontologies/ot_phenotype.yaml |
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963 |
kazu/conf/ontologies/ot_target.yaml |
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1103 |
kazu/conf/ontologies/stato.yaml |
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898 |
kazu/conf/ontologies/uberon.yaml |
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886 |
kazu/conf/ray/cluster.yaml |
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kazu/conf/ray/local.yaml |
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417 |
kazu/conf/ray/local_with_frontend.yaml |
sha256=WAcJRwDgb_hrTV3ErOnRvfDrhP_Zv8sWMeS-en1XAfw
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91 |
kazu/data/__init__.py |
sha256=nFYWk3PykfoEhZBBZWCjbzFrp4Na2BWxiUaCBaagG6M
|
35396 |
kazu/database/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
kazu/database/in_memory_db.py |
sha256=Y_kqdx8H4ZHcJyhQwIPj77sKhuCNvf1-lbpswL29-m8
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5559 |
kazu/krt/__init__.py |
sha256=oHbjffFqsqCBbHOMivWZyZdfiBwnFIKVkstBEuLwKYA
|
575 |
kazu/krt/components.py |
sha256=rkcPByFzrCaifB0aDvsKxKedL8ixpG3Xf2WI5kzm6iU
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19946 |
kazu/krt/resource_manager.py |
sha256=4Mrt7YIoN3MCP02KGXJTzYgiCORCxDoRHYogQoMhFpc
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7600 |
kazu/krt/utils.py |
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3714 |
kazu/krt/ontology_update_editor/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
kazu/krt/ontology_update_editor/components.py |
sha256=qwqLWVQFPx57SXdfFB8WSGFAkyXAUmKiBG40MNNgzO8
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6783 |
kazu/krt/ontology_update_editor/utils.py |
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5481 |
kazu/krt/resource_discrepancy_editor/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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0 |
kazu/krt/resource_discrepancy_editor/components.py |
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6699 |
kazu/krt/resource_discrepancy_editor/utils.py |
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7055 |
kazu/krt/string_editor/__init__.py |
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kazu/krt/string_editor/components.py |
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9174 |
kazu/krt/string_editor/utils.py |
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9919 |
kazu/language/__init__.py |
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kazu/language/language_phenomena.py |
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kazu/language/string_similarity_scorers.py |
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5607 |
kazu/ontology_matching/LICENSE |
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1073 |
kazu/ontology_matching/README.md |
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kazu/ontology_matching/__init__.py |
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kazu/ontology_matching/assemble_pipeline.py |
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kazu/ontology_matching/ontology_matcher.py |
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kazu/ontology_preprocessing/__init__.py |
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kazu/ontology_preprocessing/autocuration.py |
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kazu/ontology_preprocessing/base.py |
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34131 |
kazu/ontology_preprocessing/constants.py |
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kazu/ontology_preprocessing/curation_utils.py |
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kazu/ontology_preprocessing/downloads.py |
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kazu/ontology_preprocessing/ontology_upgrade_report.py |
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kazu/ontology_preprocessing/parsers.py |
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kazu/ontology_preprocessing/synonym_generation.py |
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kazu/pipeline/__init__.py |
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kazu/steps/__init__.py |
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kazu/steps/step.py |
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kazu/steps/document_post_processing/__init__.py |
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kazu/steps/joint_ner_and_linking/__init__.py |
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kazu/steps/joint_ner_and_linking/explosion.py |
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kazu/steps/joint_ner_and_linking/memory_efficient_string_matching.py |
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kazu/steps/linking/__init__.py |
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kazu/steps/linking/dictionary.py |
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kazu/steps/linking/entity_class_disambiguation.py |
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kazu/steps/linking/rules_based_disambiguation.py |
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kazu/steps/linking/post_processing/__init__.py |
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kazu/steps/linking/post_processing/mapping_step.py |
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kazu/utils/__init__.py |
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kazu/utils/build_and_test_model_packs.py |
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kazu/utils/caching.py |
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kazu/utils/constants.py |
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kazu/utils/grouping.py |
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