| Path |
Digest |
Size |
| joint_calling/__init__.py |
sha256=mBLg5bf0js_j1q8KFYNqH1dWqW2C5P_Cufhy3UQSbkA
|
253 |
| joint_calling/_version.py |
sha256=SJ7aLLT-eZ5X7RA6tRXGZZDbsYWv_Jf-LAIaOuaLbMg
|
147 |
| joint_calling/dataproc.py |
sha256=AwpuZBIfcgDOUthejhDRW6Lp6Se7QlifKA7ft7TXhMI
|
3726 |
| joint_calling/filter_cutoffs.yaml |
sha256=5xYVsFASwl7OdYwC1nlNsmnCxBSmuRgYPMhG1Mi2Lf8
|
670 |
| joint_calling/hard_filtering.py |
sha256=3AK5Vp80LtmDmaaUHIamTktVl6ge8VV99DcO9W7TdQw
|
4339 |
| joint_calling/joint_genotyping.py |
sha256=S0c4IeQ8BHb8qIR1RRiCdUWHh5KRkUvMB3pIP7TYhaA
|
25583 |
| joint_calling/mt_to_vcf.py |
sha256=VRER41QX_lguoKzhH-GXVB1GULPkyAB8nONuHnNxQEs
|
1772 |
| joint_calling/pop_strat_qc.py |
sha256=cYkqWnnetJP56pVjAqZ2yfNIM6LjRpVo91Etz3Kp91w
|
18904 |
| joint_calling/pre_combiner.py |
sha256=onrCVaEuxIVkSu_0_5FPhGucl-C4QbvbOHR81M0kDpI
|
19839 |
| joint_calling/resources.py |
sha256=gXRxSWua75-wSkRcU0j70-EZ9oMCPteb1J4AmhpqqbA
|
4458 |
| joint_calling/sample_qc.py |
sha256=DzCmcZ_f74XK6rjdb2ck744-VoTziKqElK2Z53LCC6g
|
25624 |
| joint_calling/sm_utils.py |
sha256=QtwsR5JQkrW3pWbjLEx_g8MoVkr5QRoXizq1QjoCYuw
|
18788 |
| joint_calling/upload_processor.py |
sha256=oerpOHTBfVsviy0jSMujEkB2f96s5PjFlxtcyLsmMWk
|
4389 |
| joint_calling/utils.py |
sha256=UXZmOJ6J9V6IVEYWrEuvpjhgZ1wKOO7knYC7VUQSTSo
|
16915 |
| joint_calling/variant_qc.py |
sha256=3yf8twbRYBMSsWz-rKdxHdT9R9vqpDKe_o0bah-J5ZU
|
15036 |
| joint_calling/vep-config.json |
sha256=_TOIBuwgW_GLoUQhEASv8MDTnygzJQIH9T1GkjDvkWU
|
2830 |
| joint_calling/vqsr.py |
sha256=TXXEktlCfS8F3uU8RZCOILDcxgb6-FKpvhFe0nLSSow
|
42969 |
| joint_calling/__pycache__/__init__.cpython-36.pyc |
sha256=DAS7jEZmgzyZDZH8k9t9lLiNGoya_iaigcagOy4b1MY
|
2187 |
| joint_calling/__pycache__/__init__.cpython-37.pyc |
sha256=I51xsQKUVeDBr8sw4dXvbEGnCrhbgoPRKYNt_S2-ikE
|
501 |
| joint_calling/__pycache__/__init__.cpython-39.pyc |
sha256=Dtk3-EqCr-uPQuHJf6vBiyv1nlSmSNZXSpSLyXI7JMI
|
742 |
| joint_calling/__pycache__/_version.cpython-37.pyc |
sha256=WZmtn5Z9MQC5lKHWfwp7FFTXSsb759VLKeHP0kIcP7U
|
247 |
| joint_calling/__pycache__/hard_filtering.cpython-37.pyc |
sha256=TGYG0iq03EGC80MtVv4QYgO_CsHrdHu3e7GO4P1pfmY
|
6609 |
| joint_calling/__pycache__/mt_to_vcf.cpython-37.pyc |
sha256=0bU4Zv-I4AdKAEHvyLmKWf8PCA38uwjln-8A2wAJWdI
|
1825 |
| joint_calling/__pycache__/pop_strat_qc.cpython-37.pyc |
sha256=H5wkxXpFnbHlMLNuhbgq-6gWwKbvJbJJTnnZoSvBDmI
|
15431 |
| joint_calling/__pycache__/utils.cpython-37.pyc |
sha256=pr8AG2RiD-PSpCV-PdP7YkjjcXMapVkPpL80hqjmbpI
|
15783 |
| joint_calling/__pycache__/vqsr.cpython-37.pyc |
sha256=2JPPCKZgBRLrnLHs1RFnzkZBhPnnPGIN2ox0B1D2k-o
|
35182 |
| joint_calling-0.4.39.data/scripts/ancestry_pca.py |
sha256=BvBDShb46ocWpAhuy7Wt7X7Ds2tYcUanahuQ0WBl1i8
|
4381 |
| joint_calling-0.4.39.data/scripts/ancestry_plot.py |
sha256=sw9o7dqjbRpqjKgWaXhwwgD-4NXXJepzrLVsNvZCvNM
|
11633 |
| joint_calling-0.4.39.data/scripts/annotate_as.py |
sha256=NXAu7b4BLShbxNh7KuW_O21mbhulCcWiBfQ5Gd3cA2E
|
4911 |
| joint_calling-0.4.39.data/scripts/check_pedigree.py |
sha256=yv7Olu57Kg-9pbJGWr-GdkFuPeYDYxFsJ9nbe_VYu8w
|
8570 |
| joint_calling-0.4.39.data/scripts/combine_gvcfs.py |
sha256=1VBW3wQra28p9ITCqnxDKT1ptrDE0EscEnccLRX1it8
|
7583 |
| joint_calling-0.4.39.data/scripts/create_rf_annotations.py |
sha256=AlseQwnyxioxY608E96aHsRPP9Ssw1_EKPpOFhI5wsk
|
6754 |
| joint_calling-0.4.39.data/scripts/evaluation.py |
sha256=9qKOD7dHzFxgrjeu43bK0hNtIHUXaVPWq05HmCdieKY
|
16270 |
| joint_calling-0.4.39.data/scripts/final_filter.py |
sha256=uE0TtKtAlL2xTtkzDoaI2Kmho_Llj0H10H9Ydq5fc4I
|
16478 |
| joint_calling-0.4.39.data/scripts/final_mt_to_vcf.py |
sha256=rNtocW2Dc4NLYrrIiWsjXVZIQRRIv5jQfIkMEhHsuJQ
|
2662 |
| joint_calling-0.4.39.data/scripts/generate_freq_data.py |
sha256=6HM2VW41xOEY8GLQSJp_UwKr7p1FpmgSRiNDL4VNKnE
|
10226 |
| joint_calling-0.4.39.data/scripts/generate_info_ht.py |
sha256=eacpX_UvkkZope_h2YPxRuiWR6lpWGnk56kd9bwoGng
|
6268 |
| joint_calling-0.4.39.data/scripts/generate_variant_qc_annotations.py |
sha256=EQ-X3RHRdj2ussmsmZWwdll2_LvvMjGoxOmR4h4bVOc
|
11771 |
| joint_calling-0.4.39.data/scripts/load_vqsr.py |
sha256=w7NZPqNRtfcULyC6VNo5HyGcU2ClSNk2TQ_m3xdW-Rk
|
3375 |
| joint_calling-0.4.39.data/scripts/make_finalised_mt.py |
sha256=kMDLxwi3AQkx9eDJz3CD4p6JhJRHy2egv4xKkUAMlac
|
5382 |
| joint_calling-0.4.39.data/scripts/make_noref_mt.py |
sha256=3FujRLzmaeFWaf8JBfuNUYVKojMhgERN8ktkJ1dOR8c
|
2201 |
| joint_calling-0.4.39.data/scripts/make_subset_mt.py |
sha256=RHO2KR8iXIxcbgLgjANfgu-xOBlOEFSPFLl2mDsQjco
|
2852 |
| joint_calling-0.4.39.data/scripts/random_forest.py |
sha256=cdfLLIKqZ0DeMsHUhLqjwmtsLp78Un-SLhOimRrD3XM
|
13360 |
| joint_calling-0.4.39.data/scripts/release_vcf_export_chrom.py |
sha256=5Weo9sCMzogCWL1LSQxFHjYewBTwUnOYVtQ0uQa-tAo
|
1951 |
| joint_calling-0.4.39.data/scripts/sample_qc_flag_related.py |
sha256=XCvcnWDcv5hvd58Tmap4NWXFF-IrZ5lYkvzhiJ2PNsQ
|
2462 |
| joint_calling-0.4.39.data/scripts/sample_qc_hard_filters.py |
sha256=BxaHAHBtnqniOP6Y8STf4x3v74cXHLx7bYSUvyQQI0A
|
3939 |
| joint_calling-0.4.39.data/scripts/sample_qc_pcrelate.py |
sha256=7-XUpuUSdODmp1loF3lKY48Rcxa8G6U6_tnTgxyeEU8
|
3552 |
| joint_calling-0.4.39.data/scripts/sample_qc_regressed_filters.py |
sha256=IwTcg4ya_YV7VB8w0TiYn3Lj2zCHk0_D1svqDvEQkgc
|
2162 |
| joint_calling-0.4.39.data/scripts/sample_qc_somalier_to_ht.py |
sha256=vVRKvP0arInohOvF6G_EM_IbbaG34eYLVaJ-ToFfa8c
|
1692 |
| joint_calling-0.4.39.data/scripts/sample_qc_subset_mt_for_pca.py |
sha256=wkN32m_N5Qx_cB6D3F8h9JctJA-2SsW1CVyk3OOIiR8
|
2836 |
| joint_calling-0.4.39.data/scripts/sample_qc_write_metadata.py |
sha256=wuad5zJQSZrpqeVrZgkKU5Qjmu9hdGl2mhy5d2CHYvM
|
9488 |
| joint_calling-0.4.39.data/scripts/siteonly_ht_to_vcf.py |
sha256=ju4qnkKjum8-LXXjgCtSqFLIUyEIiaPePgizsXTcnOY
|
1948 |
| joint_calling-0.4.39.data/scripts/variant_qc_plotting.py |
sha256=-CiHmpVDxUGYS6NVy9mSgLNn551Nci9igccT40r3LeE
|
29252 |
| joint_calling-0.4.39.dist-info/LICENSE |
sha256=_j76fb5CFKt53Dtm63dJhy9O-MDtf1DN2z5pChlbobw
|
1075 |
| joint_calling-0.4.39.dist-info/METADATA |
sha256=k-n06pDKwE544bGKxvCv4VCQwcSKYoJpWO7RoyMUcnM
|
10804 |
| joint_calling-0.4.39.dist-info/WHEEL |
sha256=G16H4A3IeoQmnOrYV4ueZGKSjhipXx8zc8nu9FGlvMA
|
92 |
| joint_calling-0.4.39.dist-info/top_level.txt |
sha256=DgwBlili7RW7eDVPBy_JYq2cBNpmvriIa3nzG8lSY9M
|
14 |
| joint_calling-0.4.39.dist-info/RECORD |
— |
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