janggu

View on PyPIReverse Dependencies (0)

0.10.2 janggu-0.10.2-py2.py3-none-any.whl

Wheel Details

Project: janggu
Version: 0.10.2
Filename: janggu-0.10.2-py2.py3-none-any.whl
Download: [link]
Size: 1288940
MD5: 99e9f3bfb2f87cc8b1ade31e618bba59
SHA256: 3825abe65578509232fcaa1e56f9eb5d71de105d70c9bcc9551357adc7d2fc47
Uploaded: 2021-09-29 08:18:19 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: janggu
Version: 0.10.2
Summary: Utilities and datasets for deep learning in genomics
Author: Wolfgang Kopp
Author-Email: wolfgang.kopp[at]mdc-berlin.de
Home-Page: https://github.com/BIMSBbioinfo/janggu
License: GPL-3.0
Keywords: genomics,epigenomics,bioinformatics,deep learning,machine learning
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: Unix
Classifier: Operating System :: POSIX
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Utilities
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: Biopython (==1.77)
Requires-Dist: h5py
Requires-Dist: pybedtools
Requires-Dist: pydot
Requires-Dist: pysam (!=0.15.3,<0.16)
Requires-Dist: pyBigWig
Requires-Dist: progress
Requires-Dist: matplotlib
Requires-Dist: seaborn
Requires-Dist: scikit-learn
Requires-Dist: scipy
Requires-Dist: tensorflow (==1.14); extra == "tf"
Requires-Dist: keras (<2.3); extra == "tf"
Requires-Dist: tensorflow (==2.2); extra == "tf2"
Requires-Dist: keras (==2.4.3); extra == "tf2"
Requires-Dist: tensorflow-gpu (==2.2); extra == "tf2_gpu"
Requires-Dist: keras (==2.4.3); extra == "tf2_gpu"
Requires-Dist: tensorflow-gpu (==1.14); extra == "tf_gpu"
Requires-Dist: keras (<2.3); extra == "tf_gpu"
Provides-Extra: tf
Provides-Extra: tf2
Provides-Extra: tf2_gpu
Provides-Extra: tf_gpu
Description-Content-Type: text/x-rst
License-File: LICENSE
License-File: AUTHORS.rst
[Description omitted; length: 14625 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.37.0)
Root-Is-Purelib: true
Tag: py2-none-any
Tag: py3-none-any

RECORD

Path Digest Size
janggu/__init__.py sha256=5fnCfpz9SLgbdZiOeG-md8kZl5oVEUlpZq4GrBGg1Hs 1113
janggu/__main__.py sha256=iv4r-ysHc_Lcdwj2z_KJkGHnzuaBSl4CIG8HGzECBfc 359
janggu/cli.py sha256=OVVvyxQLomDRWSafQAsA1TDWcSpB-sevjizJ6U_KnLc 17307
janggu/decorators.py sha256=59iC8Lc91xYQNYDk6p34RFoUUWk2tqYodGEjGVnEd8g 4291
janggu/evaluation.py sha256=_Ix_Ng3r5KnqxFxb-_82FjTop5cM08U6_whHzbscz4A 12965
janggu/janggutrim.py sha256=LDrpuSCLlQqX8VdMoZ2IQsrscOPQc2Vvci4fFnnY61Y 1046
janggu/layers.py sha256=U1hvFjKJ32irK9sz5vsOlAdqsiOHH3CfamuFbuhXAiU 9679
janggu/losses.py sha256=9v0Wis4FE_q_73ihSqrjhPxgDBVXy4VtwJ5bv6p8QEU 604
janggu/model.py sha256=x6Cusi-yG1sRKFfOGIHDbzL0iH8w7udlSSowLvm7ZQ8 52773
janggu/utils.py sha256=j6JRyRbhDPV6Ft_UAkwjAy0GD_LbP4SMqVqNyKUmEkA 29096
janggu/version.py sha256=6Gz6_u_nKtoWnwBZ6DKkqisAmPHl8EwUw9-OHLUH7FQ 19
janggu/data/__init__.py sha256=Wd1g2BVg1KOhtzkzDy9DJJDZH-KOtiWgjmxHuyCQ2Cc 6357
janggu/data/coverage.py sha256=Dj84QDcMU9S-uC8yOgKol5YbVpiw1VrfnUC_UW_4yEM 65585
janggu/data/data.py sha256=dYxn7PqfUwDxQCMq_DXlOFSV9l7dBHA5fH4FaFN6IGY 6650
janggu/data/dna.py sha256=wgTHosH_QIhm0cjBcn3pCwOq5knbvpLUlHwk3M7e7vg 33659
janggu/data/genomic_indexer.py sha256=2y_hz5sNQD6VQnhybVJJ6OfpTBXiyGHN--9kPS6VE0Q 15766
janggu/data/genomicarray.py sha256=BQMe82hE9B2aJjdTdzhOK9MuDyIVb38_5I7z6H5ax5k 46797
janggu/data/nparr.py sha256=bmSkxkvykyu9dYMYt1Tw6Lp-aKqGwHARng-QKWgKyls 11727
janggu/data/visualization.py sha256=9uaXZLEqEYglCkMkxQD2MTJFc3JmDcJwOHlPWZox2lc 10932
janggu/resources/10regions.bed sha256=F0BPB6C8k4wghw1xyGamjT16PNAQZXe_QI2Q5dRDVoY 14
janggu/resources/bed_test.bed sha256=P2UdUbFNDEj-JmKQAl8LjuHMYlLlnqg3GuZbLKNLWSM 16
janggu/resources/positive.bed sha256=K2GnLgj16CYDwAf12BgJYFmUxruN-pWriCaUqg6mtVg 375
janggu/resources/positive.bedgraph sha256=9zL1t6_1QkYtb1SFyg7LF9GyebcNCvMRhwzZHpi0a3Y 95
janggu/resources/positive_gap.bed sha256=KMSf0oQGOsCFuYB11nOkkiykn8-1QeKYZeNw4H2NEXI 30
janggu/resources/positive_shift.bed sha256=40weprghqBMW5REvK_AcIRrYjjX2VLsRtaYKLvejkbg 15
janggu/resources/pseudo_genome.fa sha256=_s8cYsB7Z1aQB1ZDg3YR4Geq9hLuk6uNrHfVCgsdFj4 1626119
janggu/resources/pseudo_snps.vcf sha256=jg--gTyWYrbNLxoqTmZ38bMFD6JxgvfCdXvoWyY85Og 1688
janggu/resources/region_w_strand.bed sha256=NiqxIYcirLBI3GskB6GFsNgykM0gd2ZsLAV2Oj97QUI 66
janggu/resources/roi.bed sha256=abjsBxtYR934T-C_zGn4sVpItVdjG4laZ2V3pgj_KJU 34
janggu/resources/roi_test.bed sha256=UZvMUXRg1D_l5cbQaJ-fMfarFrGj2B2yfzGbcwqtSk4 16
janggu/resources/roi_train.bed sha256=uidCZqoNTWoIhRd37FQrPmYd8B0F4_mv6RtukaNx-F4 18
janggu/resources/sacCer3.chrom.sizes sha256=KQLohC92-HxrX0nSBZpOX6bzdau8UdJnwo_3EzAgVHk 229
janggu/resources/sample.bam sha256=D3MZCyaiDGCNOqcosbAx2Q4bNdX69wXbnqWIWHbuh60 2948
janggu/resources/sample.bam.bai sha256=yoJ7reoIJb1L1NxlWQZq4YTb1bc25gZMha5NERIAaoI 240
janggu/resources/sample.bed sha256=dC-kIVkingq2OyY-bJrl975_dLimwDUCvF56sfNdzVc 46
janggu/resources/sample.bedgraph sha256=b-eHsjIkWc3ojByw-E2YF_c34OnnIzkQhtjAkJBQ1Yw 81
janggu/resources/sample.bw sha256=-qb8trLx_GBHP9SVJccDmfFRXoBaJ0peUtZyMoYzCJ8 1200
janggu/resources/sample.chrom.sizes sha256=4TTSv8e1PwNb3k-z_FOFVrNYetWkuibjcEnJ9l49G1E 22
janggu/resources/sample.csv sha256=FkD1192X_gg9wPfts16J0ewYem784M0-SisRxeiUl6w 200
janggu/resources/sample.fa sha256=7_7xQXrSyhJRTVpP5ydBqq2nspwWVTZVxO2ErYNkDoI 880417
janggu/resources/sample.gtf sha256=vwSgKY0fe_Nw2CIr-S0e6yFDOgPAurOpsEEVAYHlrK0 147
janggu/resources/sample.vcf sha256=OzTjIhAU6wnQMnPF2HrADBzyVWsQjwOCs--Et7TjU-M 2130
janggu/resources/sample2.bam sha256=rc43Xe4YW6HjlSVIYrjh_P2IdwxK3Ror9Wn2w39FzhQ 287
janggu/resources/sample2.bam.bai sha256=mhO6ju5CNxRPomcD0HEJRBQhF5BXRvQcKjGxlRuCI0k 176
janggu/resources/sample2.fa sha256=Aij54Ba9kcZCUmE2JwtO_vddwpFvkG1HeF--EcD7lPg 881158
janggu/resources/sample2_test.fa sha256=AUzfwWo7V_yY9L-KeIXbvfj55KawOjgTZajdtBXyf18 22590
janggu/resources/sample_equalsize.bed sha256=Rv_E83UqiHqMXE58c8_EK5YQd4EUy_mFzhOksizk0e4 68
janggu/resources/sample_fulltile.bed sha256=K4N6oH3WswkiA6BK8SaLU-8tPZCYwIaZd5pKDmyKCv0 26
janggu/resources/sample_fulltile2.bed sha256=s8ZgGS8HzgCsWjDPDSXXgQSNb8ADWOU3ukp4aK4vx4Y 57
janggu/resources/sample_genome.fa sha256=7Gs-2qai8SqIl1tBIJlqLGg7MDb0neZw2TvBgVLzx3Q 61012
janggu/resources/sample_protein.fa sha256=2xquz_pLyYLN8N-LV_1rUAPVQyVOKLtGEz_6nf2tmdw 1409
janggu/resources/sample_test.fa sha256=iXLaTsTdLeWPUtoRPrLVx50VhPsmYqo6QzSeeLCyNyQ 22576
janggu/resources/scored_region.bed sha256=uxOHHlYxVzOPq043h4OxcjvM8_c1PiNu3QMATDZOozA 84
janggu/resources/scored_sample.bed sha256=WpTXcP2XDSMoy4kNa5Kw7oy9v-XsNWiH0tAl5-2S_N4 104
janggu/resources/scores.bed sha256=4xXsoIkQ4ATwzjy4bqRvEE0tDGSGOXmzUMA6DcYtG7c 33
janggu-0.10.2.dist-info/AUTHORS.rst sha256=mw-b5QLJiAvC5iLWA7m6Cml9pOsaTee6ssEQVrCGf60 415
janggu-0.10.2.dist-info/LICENSE sha256=5X8cMguM-HmKfS_4Om-eBqM6A1hfbgZf6pfx2G24QFI 35150
janggu-0.10.2.dist-info/METADATA sha256=xmXJvf1bQ_q7UUSRihG3pJv26XBuKdSpNjuItVnQnGk 16352
janggu-0.10.2.dist-info/WHEEL sha256=WzZ8cwjh8l0jtULNjYq1Hpr-WCqCRgPr--TX4P5I1Wo 110
janggu-0.10.2.dist-info/entry_points.txt sha256=GvtLc5qqyTPuYfSWEW5Xw9QHOSbgv-EEGcenL3DT1ro 81
janggu-0.10.2.dist-info/top_level.txt sha256=RN6pbrSyaVGKh92bCBAaIR1KQOkAI_G5bh2pyfFNblc 7
janggu-0.10.2.dist-info/RECORD

top_level.txt

janggu

entry_points.txt

janggu = janggu.cli:main
janggu-trim = janggu.janggutrim:main