isovar

View on PyPIReverse Dependencies (0)

1.3.0 isovar-1.3.0-py3-none-any.whl

Wheel Details

Project: isovar
Version: 1.3.0
Filename: isovar-1.3.0-py3-none-any.whl
Download: [link]
Size: 110533
MD5: ee452e5386e5d8ae25ce207a399c4c5a
SHA256: e228f393b5ae1cc5208807aa5638634671e7fa7484927926c78c305b59d8ccca
Uploaded: 2023-08-01 17:55:48 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: isovar
Version: 1.3.0
Summary: Determine mutant protein sequences from RN using assembly around variants
Author: Alex Rubinsteyn, Arman Aksoy, Julia Kodysh
Author-Email: alex.rubinsteyn[at]mssm.edu
Home-Page: https://github.com/openvax/isovar
License: http://www.apache.org/licenses/LICENSE-2.0.html
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Operating System :: OS Independent
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: six
Requires-Dist: pysam (>=0.15.2)
Requires-Dist: pandas
Requires-Dist: varcode (>=0.9.0)
Requires-Dist: pyensembl (>=1.5.0)
Requires-Dist: cached-property (>=1.5.1)
Requires-Dist: psutil
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 18032 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.41.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
isovar/__init__.py sha256=W_gmG8VTJe98XHo8JlDEcskH4TJQ8IM3EpyM_lTnodw 1454
isovar/alignment_score.py sha256=EiILeTOZbCkcTWMMr6hNMIgKLKmTBZQY_FYp25HUksk 3318
isovar/allele_read.py sha256=UqoVUiDzCS5aZX5dE8GFQe1e0pRrwmjpFbdsfs4Ugbo 4090
isovar/allele_read_helpers.py sha256=jz6i6-OqjVxmJJRwzNRnVZOmPyh09XQVu0itbjXbmC0 3711
isovar/assembly.py sha256=DD1OcDACJAa4TBqHDjWKeHUuuViLKtTRpigBof3ubFw 5798
isovar/common.py sha256=TkiZNVDUKQJIBTTLnIuw3zgehdRA0IKEsqsp0uElrWw 2461
isovar/dataframe_builder.py sha256=pcF5mWYSqpIG5Ln8bBhq5QHUk5BXQjTNRx1ABSsBZQI 7356
isovar/dataframe_helpers.py sha256=E1upXQkoOOx2DtDexL7doODFNBymOBxaJhbLU8OdPc0 7369
isovar/default_parameters.py sha256=VrIxJfqO72a6qIy8-HuKLRHE4HWBJEjch7lGrU_1KHE 5310
isovar/dna.py sha256=V4QQm3_7LE2eYncxkxQM0z3pgFYALSOy2xHre69fo74 1476
isovar/effect_prediction.py sha256=stO70tzaG8MEaCMXnI4buwOBW14iYAw8gcGwNQZHUjE 5848
isovar/filtering.py sha256=oCoeGkbUM-wQKB41shvUKhxJn8CFJ5xm4l1ePYYph7s 6449
isovar/genetic_code.py sha256=W3s7SuScdkOFQfjsbNyG1zv2r_kkCnbk3254Se_w0WA 8454
isovar/isovar_result.py sha256=4nZbNaIKO3WiKQMGWdyg5XFsRFsiMEi8jgCvAdfHloo 37719
isovar/locus_read.py sha256=WTByLs_WHK7_GV-kmaXrEWzx0Bt4U0N2Z2Aa9bYAFkg 6248
isovar/logging.conf sha256=EGmjv3ypo8kPqhyE72AqUqD5rmq_PU-ug21BsluLTJU 909
isovar/logging.py sha256=k9P7xy9oFdz6HIm6191p5vhZ99f718oMoItNvJyWD8A 827
isovar/main.py sha256=5SuzXjN9GAoMP_kOwklRHsXNNcAB6pcc60Hna1uXKmw 6725
isovar/phasing.py sha256=O2NCO17aSwvw07iWk5P60eGJK9rSgHevZqV22_z8yWk 5319
isovar/protein_sequence.py sha256=w9xpavqtmMse6d4AxjhWGc4Q7x--2OhfLGVCsqvO90Q 15146
isovar/protein_sequence_creator.py sha256=vbC9J6ee8nAO6La6sWAPy_wA0PlITRYMPObAPT_gRRY 16686
isovar/protein_sequence_helpers.py sha256=3F94RU7M9KLcTqS2SDdxaDH3H4dqdLwwQw0-zggYpnI 1889
isovar/read_collector.py sha256=ir7IwmCmkJUbuWu92CRaGsT2Xt4naW98PmztZPwTQzg 22442
isovar/read_evidence.py sha256=w-VFLwA9h3nnz7UgV9uIiJVQdcx1ndwwLRAUQcBJcfM 3998
isovar/reference_coding_sequence_key.py sha256=_qeXVdG6aWtYD0qu7WRI-19qTa4et-c2lfXyi1cRGG4 9572
isovar/reference_context.py sha256=gmrtUz38DLjTWkg5nXrQbiqMWiIJTr21IvU0Ii5V2NI 4067
isovar/reference_context_helpers.py sha256=_WBGOLgOQAiulkLKMpyDpAgSO4UzUVKHNWSnITurxIY 3404
isovar/reference_sequence_key.py sha256=JnxEyJOED0YnWQVopSEhdWqFI3lXrvlg4wVsj6QnbTQ 4439
isovar/string_helpers.py sha256=NOJJgJxbL7Jkp8tfEb2C1Yd6ZS0HlU7zYHgJdzGTxjA 1823
isovar/translation.py sha256=ngoSJzVXAl2xqteO2pg0XYSk6y6pdbxaaKvADkYv9xI 5389
isovar/translation_helpers.py sha256=SqDgKkH6FnheBOLhj56zI5nJSr60cuHM7f2V_taNHIM 4388
isovar/translation_key.py sha256=u2FA5Ld1UHNM9p_RyNpzAD4f8GZiQZbOtz9hl1F1Rlk 1770
isovar/value_object.py sha256=0A6vC0SRM-i10QzOPwuULFO1Pw4h6Cdo4LKXH4Derww 3288
isovar/variant_helpers.py sha256=QzMclGigYyZvP7lDejKgaM2m42FnwsDCepKIhMAWF_s 6696
isovar/variant_orf.py sha256=3lEHYhhT6K9enpNe-WJ4yAX7dp9EdGWNfJTttmvkQG8 11831
isovar/variant_orf_helpers.py sha256=svvHk22CXpSrQIToojVRXUsMCi63FYwVEqb2l7-yVKM 5017
isovar/variant_sequence.py sha256=ar7JD2z-yBRSG4Z2CA01mhIcTSZLrL92mTE1hfqEGL0 10005
isovar/variant_sequence_creator.py sha256=HfvBs5Y5FE4V-uDwaFXoaP5rSrlBDDWzVEaRIa--9Dc 7813
isovar/variant_sequence_helpers.py sha256=LvwtLDCqOwyIucycvNQVvP7sz7fZBFTDC0LsgzKa3Yo 5842
isovar/cli/__init__.py sha256=9llUDQ3fjXLZDGu_uXXWhOu5JbXEAXbW9K2bKEqsv8g 1012
isovar/cli/filter_args.py sha256=8xW9dl29lKhayXLhupoe9O_XlEGuUCejCZah-E0K6_I 2959
isovar/cli/isovar_allele_counts.py sha256=GQiockCby9wys48_cLChGOKiJ_xauJH5JRfPnijZJQI 1359
isovar/cli/isovar_allele_reads.py sha256=yCJybDLlqg-hAMTNKXN3rM2KGqDIUjYUO5a43C6_37o 1220
isovar/cli/isovar_main.py sha256=uitckceD-iHFyXrwO0K_ejhpWUbciDFXw2gP3vwTsv4 1480
isovar/cli/isovar_protein_sequences.py sha256=o0tXINpQqHdsqnNMAbdhYWj-CpChuzxN0Y3hjfK7ft0 1437
isovar/cli/isovar_reference_contexts.py sha256=VuOe0WbMt8D1pEIbzY93vWr7v6zEpDjo4uHi7Hg6rkg 1272
isovar/cli/isovar_translations.py sha256=YbB52TZfYf1FC9_eg6bY-yFI4uM81i3tJWO79QeLtu8 2669
isovar/cli/isovar_variant_reads.py sha256=x3GshMXwCfkZhRhxfAIoBq0E-JapbSKSZEPtda-yfNI 1347
isovar/cli/isovar_variant_sequences.py sha256=URIg30XK8PuNFo6RmZANqyfFDMzY_Q869GKqV_Xvz0A 2322
isovar/cli/main_args.py sha256=Za9QzxU6QlqiLwkDQGaTh9kLqCPHa88QAVRdo7Ch8rY 1990
isovar/cli/output_args.py sha256=gk4rnAvcBPIj8khmNxNSgkuhqCiyH4jx36e3PpB77Hk 1723
isovar/cli/protein_sequence_args.py sha256=KrHyGv5TJI84Tb4eFnBOIXd_8-0wUR9d_KJUN3Mgzcs 3454
isovar/cli/reference_context_args.py sha256=j6ziR-gIUUkzdKf74wQiJ383WJ6mVLADNcB4L1r71wQ 2337
isovar/cli/rna_args.py sha256=O0Xd7YDaxZQe0UeLYIddMgSPLzHVX1jlDJwEWhuTdmk 4593
isovar/cli/translation_args.py sha256=VJJNkxbsSp2Pz8rwtfCvlVfVhUvD5kQDZvV4HDyjkxE 2912
isovar/cli/variant_sequences_args.py sha256=P0z_4Vb3T26jyOb__5tqjJCV0BizWm_77WsIwQRBdfk 2582
isovar-1.3.0.dist-info/LICENSE sha256=tAkwu8-AdEyGxGoSvJ2gVmQdcicWw3j1ZZueVV74M-E 11357
isovar-1.3.0.dist-info/METADATA sha256=1I1_doO-2azZzH_tUFu75Osi7dc-1UQH6z0agQIE8Bs 18968
isovar-1.3.0.dist-info/WHEEL sha256=AtBG6SXL3KF_v0NxLf0ehyVOh0cold-JbJYXNGorC6Q 92
isovar-1.3.0.dist-info/entry_points.txt sha256=5oM7rXa_LTO5D1R5sDkfuz2ZFdSmNp-VVRx4WWn48Xg 489
isovar-1.3.0.dist-info/top_level.txt sha256=3TY8D_5agPNw_XI1aj0HRCIhubo3-lnYTA3H7tKc70E 7
isovar-1.3.0.dist-info/RECORD

top_level.txt

isovar

entry_points.txt

isovar = isovar.cli.isovar_main:run
isovar-allele-counts = isovar.cli.isovar_allele_counts:run
isovar-allele-reads = isovar.cli.isovar_allele_reads:run
isovar-protein-sequences = isovar.cli.isovar_protein_sequences:run
isovar-reference-contexts = isovar.cli.isovar_reference_contexts:run
isovar-translations = isovar.cli.isovar_translations:run
isovar-variant-reads = isovar.cli.isovar_variant_reads:run
isovar-variant-sequences = isovar.cli.isovar_variant_sequences:run