immuneML

View on PyPIReverse Dependencies (0)

3.0.2 immuneML-3.0.2-py3-none-any.whl

Wheel Details

Project: immuneML
Version: 3.0.2
Filename: immuneML-3.0.2-py3-none-any.whl
Download: [link]
Size: 735073
MD5: 588b6e2c41c519f35d56a688a0cda4b9
SHA256: d15fbbd1e45fdd77a142a24d7098cfee165f3c8bb868523abd971142a8403eac
Uploaded: 2024-11-13 12:44:57 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: immuneML
Version: 3.0.2
Summary: immuneML is a software platform for machine learning analysis of immune receptor repertoires.
Author: immuneML Team
Author-Email: milenpa[at]student.matnat.uio.no
Home-Page: https://github.com/uio-bmi/immuneML
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU Affero General Public License v3
Requires-Python: >=3.7
Requires-Dist: numpy (<2.0.0)
Requires-Dist: pandas
Requires-Dist: PyYAML (>=5.3)
Requires-Dist: scikit-learn (>=0.23)
Requires-Dist: matplotlib (>=3.1)
Requires-Dist: editdistance
Requires-Dist: regex
Requires-Dist: tzlocal
Requires-Dist: airr (<1.4,>=1)
Requires-Dist: pystache
Requires-Dist: dill (>=0.3)
Requires-Dist: plotly (>=4)
Requires-Dist: matplotlib-venn (>=0.11)
Requires-Dist: scipy (<1.13)
Requires-Dist: bionumpy (>=0.2.31)
Requires-Dist: umap-learn
Requires-Dist: olga
Requires-Dist: torch; extra == "dl"
Requires-Dist: keras; extra == "dl"
Requires-Dist: tensorflow; extra == "dl"
Requires-Dist: logomaker; extra == "dl"
Requires-Dist: gensim; extra == "dl"
Requires-Dist: keras (==2.11.0); extra == "kerassequencecnn"
Requires-Dist: tensorflow (==2.11.0); extra == "kerassequencecnn"
Requires-Dist: tcrdist3 (>=0.1.6); extra == "tcrdist"
Requires-Dist: tcrdist3; extra == "all"
Requires-Dist: sonnia; extra == "all"
Requires-Dist: torch; extra == "all"
Requires-Dist: stitchr; extra == "all"
Requires-Dist: IMGTgeneDL; extra == "all"
Requires-Dist: keras; extra == "all"
Requires-Dist: tensorflow; extra == "all"
Requires-Dist: fisher; extra == "all"
Requires-Dist: logomaker; extra == "all"
Requires-Dist: fishersapi; extra == "all"
Requires-Dist: gensim; extra == "all"
Requires-Dist: fisher; extra == "fisher"
Requires-Dist: fishersapi; extra == "fisher"
Requires-Dist: sonnia; extra == "gen-models"
Requires-Dist: torch; extra == "gen-models"
Requires-Dist: stitchr; extra == "ligo"
Requires-Dist: IMGTgeneDL; extra == "ligo"
Requires-Dist: gensim; extra == "word2vec"
Provides-Extra: dl
Provides-Extra: kerassequencecnn
Provides-Extra: tcrdist
Provides-Extra: all
Provides-Extra: fisher
Provides-Extra: gen_models
Provides-Extra: ligo
Provides-Extra: word2vec
Description-Content-Type: text/markdown
License-File: LICENSE.md
[Description omitted; length: 7359 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.5.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
immuneML/__init__.py sha256=p4IdLCl61obB5hCP9JBrBsSX5zpYlCj8G08vQt2mMb8 182
immuneML/IO/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/IO/dataset_export/AIRRExporter.py sha256=nvBkxrcyqkgY-V7gDV7Ks4-71r9h42BgFRRN4L-IaPk 2426
immuneML/IO/dataset_export/DataExporter.py sha256=SrtJxdUA2sfzboDngEZm1iueZFy8md6YiPdZrrNNA-E 288
immuneML/IO/dataset_export/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/IO/dataset_import/AIRRImport.py sha256=nVU7htCi0E7K2NOHZ7z4VsEwtjuJufbIoVSEVyQPn5A 7934
immuneML/IO/dataset_import/DataImport.py sha256=x8BTXiWX7071v3aJcUoGrsoOm4CcTXxj1SzcwJQq1Dw 13400
immuneML/IO/dataset_import/DatasetImportParams.py sha256=EXitfJY1JN7stiYpUePKMzrApH_1aAuacnv2vHawXG0 4410
immuneML/IO/dataset_import/GenericImport.py sha256=AAI9o29YkkzK43HDbtJmilHaetID8IR1UrumIoFvPMc 9088
immuneML/IO/dataset_import/IGoRImport.py sha256=IguqTd_KaHnKxyDOpYXzUTWv-FPHpwRhcrcX1pjgl_w 9069
immuneML/IO/dataset_import/IReceptorImport.py sha256=sJxfnBoRHF5dB8hhpkTofoWG_-rJ728bxL9wZo8iTYY 17730
immuneML/IO/dataset_import/ImmunoSEQRearrangementImport.py sha256=5DzUt7Oj0TXAz2OsOlyPX7ohVH8IS13UHr9lNiGHKJI 9305
immuneML/IO/dataset_import/ImmunoSEQSampleImport.py sha256=yw3ToV5fQ-PqGOQBKy2v0jqV7Yu1ALkg7yCXraI9I1c 10232
immuneML/IO/dataset_import/MiXCRImport.py sha256=tHt6ceqtcOlonEHwmDkzPeF-xzWjLD08rS7xYfPFN3U 7469
immuneML/IO/dataset_import/OLGAImport.py sha256=F07bt9zCuxfUlE9fj0ib9DEpRCaBwP5mTTD5LQRYsjY 5864
immuneML/IO/dataset_import/RandomReceptorDatasetImport.py sha256=ov3lqq_zUPzWJ3oMKGZRwjNMA5kN7GYBg7Pu1_7pwDE 5886
immuneML/IO/dataset_import/RandomRepertoireDatasetImport.py sha256=AMa_rjzQrg_AKC-BOKMr9STv1hg8bPo2YQGfjtwWlg8 4543
immuneML/IO/dataset_import/RandomSequenceDatasetImport.py sha256=MejLvXRpzMKSUZ6d5CDd8oIxoqgMrKpPsItWM6Do5gI 5143
immuneML/IO/dataset_import/TenxGenomicsImport.py sha256=jSdEYheXLqrR4uOXESq8QdS2RSklLL6RxGMofIj59X8 10243
immuneML/IO/dataset_import/VDJdbImport.py sha256=1SZ2quYFw05J3w5vuoybEgm3dysiAsDUw3r1eU4eZxo 11337
immuneML/IO/dataset_import/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/IO/dataset_import/conversion/imgt_adaptive_conversion.csv sha256=Oy0xerXbyu25f0v1BBpPmQ1aVps3d6b022X_BCrX1ok 14265
immuneML/IO/ml_method/MLExporter.py sha256=41I7fPafNrZyEY9Q2aRmzHwaFrKvGPpe4fwBiwMKsvQ 3095
immuneML/IO/ml_method/MLImport.py sha256=X6d4Bg5KQc9Gqa9eM7F9G3csR29RKqxBz1RgfSpqgEc 2156
immuneML/IO/ml_method/MLMethodConfiguration.py sha256=vZoEWDEykw8uBvZElKQCeVTQnvdTFqxv7ZcnjhyofVE 959
immuneML/IO/ml_method/UtilIO.py sha256=KdZA5aILSL4iBH3o_0nwWdsHeIsRYAr25rs5zgh83cE 1868
immuneML/IO/ml_method/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/analysis/AxisType.py sha256=UJSE6K70QEgyUXU-JX0TgHcvrlv6EdSH1ZEYodH0lDg 84
immuneML/analysis/SequenceMatcher.py sha256=u2hH15BGnYcykMimDGfDkNnBCfXCbuzeGYK79Ew6_pY 5060
immuneML/analysis/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/analysis/criteria_matches/BooleanType.py sha256=omsPwsO41U-uBvz9vi29sxClLjNuQjgod5onmDypSAA 73
immuneML/analysis/criteria_matches/CriteriaMatcher.py sha256=d_JF_9v5n_6QlkWx6k2yKmTAm0WM73oG4XPTlIh8970 5413
immuneML/analysis/criteria_matches/CriteriaTypeInstantiator.py sha256=7y3pcXgI5o4g0BIZ_VQT6LIuFbv62Rt5hAIHGy2-4i4 977
immuneML/analysis/criteria_matches/DataType.py sha256=ldaEX6hCc6gnJG94t9fWt8WlVrAfKHg8TRXzknM_YhQ 62
immuneML/analysis/criteria_matches/OperationType.py sha256=_e4Do28bLkLO3QQ1YsEuLnP60o62vAlwoXrQ42gZtFU 163
immuneML/analysis/criteria_matches/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/analysis/data_manipulation/DataReshaper.py sha256=DF1VoPXpT5m6mzLi_cFSIjAMZk5FhcIoxhEu3315rNg 1928
immuneML/analysis/data_manipulation/NormalizationType.py sha256=Y6DC0xyyj9LUpEid_mfHEcjgpRCKyKqTGw4YD9WEfic 156
immuneML/analysis/data_manipulation/ReductionMethod.py sha256=fggIzhEXNRDr-LHeIDgEhHgTnoUSMI8BYmItBDuusPI 78
immuneML/analysis/data_manipulation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/analysis/entropy_calculations/EntropyCalculator.py sha256=8dfSNRa-rSDWBw5NaDf-qLR7pd94LPAI65VGB_7EjtA 977
immuneML/analysis/entropy_calculations/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/analysis/similarities/SimilarityMeasureType.py sha256=M0UulnXBHvEEuYcDPlc6IywPug7SKLZGe7GUueL_xy8 109
immuneML/analysis/similarities/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/api/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/api/api_encoding.py sha256=6OXw6OvSKjkWYvKdJeLsB1w84LAtamK50vtVGkltlyo 4148
immuneML/api/aggregated_runs/MultiDatasetBenchmarkTool.py sha256=87VHXvWktofkQlYowbCWk4ZwyuoJaG2QnyE-w1ehKhI 9961
immuneML/api/aggregated_runs/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/api/galaxy/ApplyGenModelTool.py sha256=Iyduia13j19HCppDTVYg9ShpatCq8sK0C-yap2FTlFY 2104
immuneML/api/galaxy/DataSimulationTool.py sha256=I5U-0kJtOR-Di6woFjbQ4wn33b97Phw4bBEEEt5-_mU 2206
immuneML/api/galaxy/DatasetGenerationOverviewTool.py sha256=H6ggWOpfG30Q0EBSOmI1nk9UqnvIGoqDeDfuTSEuxH4 4087
immuneML/api/galaxy/DatasetGenerationTool.py sha256=hRd_RUvc7gNYq2IMcnz4Q7ag2OeScBkj7zjGnYxCFY4 4153
immuneML/api/galaxy/GalaxyMLApplicationTool.py sha256=1Dg4PmSVeTuL7xYJnZQR6Nv1_0LyaCQuDouWnv2Ot5M 2076
immuneML/api/galaxy/GalaxySimulationTool.py sha256=Hyb52yYvjO085CDNEisaCQVwPAY392AR3zBVj3C5TKI 4051
immuneML/api/galaxy/GalaxyTool.py sha256=rJrOw03wHXc_WOIAXqzRD31x4d_IMpmqL_YHINItbVk 1106
immuneML/api/galaxy/GalaxyTrainGenModel.py sha256=qut8teCa7dUeJheYYvsUB1VjG415L7A0ERuh4G0RgNw 3350
immuneML/api/galaxy/GalaxyTrainMLModel.py sha256=bHuzCw6zwPMBYEdwPYjbCQ8iaZwwHzAcaJbeRnLtPYs 3494
immuneML/api/galaxy/GalaxyYamlTool.py sha256=2pWvaMGB2L77W2B0b2ayv69vNENZNK4zIKDhBT4KMy0 1058
immuneML/api/galaxy/RepertoireClassificationTool.py sha256=LX-lUfV2PwzM_Sk1U977pa-17hOPs9j3dhj7-CfesKo 638
immuneML/api/galaxy/Util.py sha256=CYJgk-If7Zf2DaXT7Tvfb5Mmp_jQiuCnXpFNCoGza1k 7745
immuneML/api/galaxy/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/api/galaxy/build_apply_gen_model_specs.py sha256=_jLhxxO5KKL2pkmbWj2IX94BLwtjRuVE-6vCeKPJGHM 3185
immuneML/api/galaxy/build_clustering_yaml.py sha256=Uvne7nP1eDXMUTb2CRlsb3iXxjBc2CceaGwe0EgJgvc 4159
immuneML/api/galaxy/build_dataset_overview_yaml.py sha256=Aq4imT0XQ-vzBEerCJoqq89QrzJK-r5-UjXhgFq05OQ 6847
immuneML/api/galaxy/build_dummy_data_simulation_yaml.py sha256=NVOuzyf_yxIZSXrOegCm3ssszADntnhbLJvNi3F5Co4 2805
immuneML/api/galaxy/build_ligo_yaml.py sha256=EUqlDzdx0MHhmbrtxdAvkciRbyXG95-MprX8v50l-iQ 4743
immuneML/api/galaxy/build_ml_application_yaml.py sha256=k9Y35AQm4ZWtTnVcRHIpfX9MHgFgBhLko6JgmWDR-Go 1965
immuneML/api/galaxy/build_train_gen_model_specs.py sha256=ZJVPSpdrj9NRFHGpVWiVoMVgdaHpXRnIb2n9U3Uu8JM 4689
immuneML/api/galaxy/build_train_ml_model_yaml.py sha256=sSab3-GgQ7A3haacqjzMUCdoohr_AXT39j_aDaNakIM 11184
immuneML/app/ImmuneMLApp.py sha256=6deYtXA1gqMtiZ7EO4JGa3MnyUvX60DcIXx-OW9GxCk 4382
immuneML/app/LigoApp.py sha256=pq7o34bjQbrcoYPkrPScXY8OmAcCJm7z_0nHVztQfLA 2740
immuneML/app/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/caching/CacheHandler.py sha256=UJnJCZ7lYSAbERYzCzfL2GuTqh4FrlWWw9OES2BwZkQ 3765
immuneML/caching/CacheObjectType.py sha256=a3w0Gk7f-jNObuU9CpkylMlpYd3IwXVNpXbNApCJ3zc 107
immuneML/caching/CacheType.py sha256=RZCGjh_qTgNPvh-sru3X36lrvP0zKGXIfEKJwFoIYCk 96
immuneML/caching/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/config/default_params/datasets/airr_params.yaml sha256=C_yPaxBS-MrZlJsfpfW0cTlcGAmmVtR5eAql63LadDk 559
immuneML/config/default_params/datasets/generic_params.yaml sha256=o4m20Ul8j2FE7BJ3gyCSGXScVjBm8ypT9b3z2DMhhxs 444
immuneML/config/default_params/datasets/i_receptor_params.yaml sha256=C_yPaxBS-MrZlJsfpfW0cTlcGAmmVtR5eAql63LadDk 559
immuneML/config/default_params/datasets/igor_params.yaml sha256=MIjrEiJg1V3DF6QvCczwTzYur5eovuedpmhnb9DJjj4 615
immuneML/config/default_params/datasets/immuno_seq_rearrangement_params.yaml sha256=ulhxpQpyNZZiAyOYHkM8SLz-hLyWwdOa9YCgMsgXBGY 961
immuneML/config/default_params/datasets/immuno_seq_sample_params.yaml sha256=EsYKLM_hKHLAEQTnr0rTEM9xVcpdb9p4fy_kTim6m34 923
immuneML/config/default_params/datasets/mixcr_params.yaml sha256=LjPr0hc8lJpJupnAROoMgwDFW7a6Ws_r4Ed-ta5zhnc 811
immuneML/config/default_params/datasets/olga_params.yaml sha256=0NNCRS68RuLCR2asnuuAr9UbCIynQhu-9XXaTUkbWbs 477
immuneML/config/default_params/datasets/random_receptor_dataset_params.yaml sha256=t5-LNYUHKTcSxV1aJrQVVVJLdCbnHkvGaqhrGGqKves 170
immuneML/config/default_params/datasets/random_repertoire_dataset_params.yaml sha256=iGMEVA4tbGTAf7dIfhNl258HzsQTTjK243cDmVgmYVs 723
immuneML/config/default_params/datasets/random_sequence_dataset_params.yaml sha256=NmH-aqAZo2z0YWoTG24YhCgBO1qG8OZWm6R3ridXJRk 116
immuneML/config/default_params/datasets/tenx_genomics_params.yaml sha256=3TX06I_ewTSIc-KX7FDNnTB6YZsCQ3KUJH4zLodlFX0 921
immuneML/config/default_params/datasets/vdjdb_params.yaml sha256=rRNggzN2MzSWNpyB8Dl4Wiu-kgddZmukTUOUePtwduk 697
immuneML/config/default_params/encodings/atchley_kmer_params.yaml sha256=V1LZIg_DuSPqXlu7mhInI2I08MrU9NZxzBKVNz5H8oo 101
immuneML/config/default_params/encodings/comp_airr_distance_params.yaml sha256=w4LmIwMfu02HqjKeazOuiZKWPx90IY9dOqfLx_iseo8 128
immuneML/config/default_params/encodings/comp_airr_sequence_abundance_params.yaml sha256=7k7kdnKc2qXLSqeAZ9Laz2mmGk2vHTwrkgi7DoS--kM 131
immuneML/config/default_params/encodings/distance_params.yaml sha256=rJAN9z4oPPROPjZ1XQ1O4-QqnoZDQRF49IbaVCmkVAk 85
immuneML/config/default_params/encodings/kmer_abundance_params.yaml sha256=cs1ZIS53zfiWZED7WfFqg5ZeJ084k6gfUYgvLKDEi8M 387
immuneML/config/default_params/encodings/kmer_frequency_params.yaml sha256=svhzHAluxECzFFR-9bCaJo4WyQ3VWExuOBKA4UoZuTM 762
immuneML/config/default_params/encodings/matched_receptors_params.yaml sha256=PYiX0R4tNtIhVSNzLEPLj-Rfi8Jyn7qp3324I9yBsSI 188
immuneML/config/default_params/encodings/matched_regex_params.yaml sha256=K6C3Fs628JvmMKnqs-LBdM4NCxi0Xbitj1NO24SOQio 31
immuneML/config/default_params/encodings/matched_sequences_params.yaml sha256=EvJgf1AMLhQ53dL7byDdBlxCsfn_wDKFdNofCFfTAgE 95
immuneML/config/default_params/encodings/motif_params.yaml sha256=Sv8905Yx5PD7M69J-x9PqKRFK6ly45wRTWx2U6HDdA8 104
immuneML/config/default_params/encodings/one_hot_params.yaml sha256=wqf-kiyHHKJ6NG-ij6eA_AccPKQ64Ci9Uqc9Ol2DGhw 269
immuneML/config/default_params/encodings/sequence_abundance_params.yaml sha256=ZggTcN2MPyJrT1-7ZY0GThWx19aKngKzWKvbeeb9ZQ8 114
immuneML/config/default_params/encodings/similar_to_positive_sequence_params.yaml sha256=jzo0sggzar7FJ5-diB1VCB3zWohSZlSS2Qk7vovhY14 98
immuneML/config/default_params/encodings/word2_vec_params.yaml sha256=uXOi64ZBJertTLqtQZLhPmX8nE9iAMLYrEKyIMy27aU 258
immuneML/config/default_params/example_weighting/predefined_weighting_params.yaml sha256=sHBU9hHpisHcIS0k4z_pbjFSeRLqN-U_qOlCoDzpGHE 15
immuneML/config/default_params/instructions/clustering_params.yaml sha256=bQW89Z5_bxL609ON_HaszgsNiaY7-YU_wW_VCR_ig9c 96
immuneML/config/default_params/instructions/dataset_export.yaml sha256=m5swDoMAWwGIUx0GJYCkXtvYRYGMoR5Fl67paK8v1OA 45
immuneML/config/default_params/instructions/exploratory_analysis_params.yaml sha256=jwraPx8fxirctJd4ZXH3t6bX7OyHpkJ3bDRac77cXL8 22
immuneML/config/default_params/instructions/export_parser_params.yaml sha256=PZ_XY0vsg0p-3tx8CmvKPKGj8K7EpNvbZ4u4OwZ358Y 64
immuneML/config/default_params/instructions/feasibility_summary_params.yaml sha256=OncX9-HfzzTTsZsRo8afzxIfPSXSRrZm7W2jIqOhDsY 44
immuneML/config/default_params/instructions/ligo_sim_params.yaml sha256=CDICVttbNbpR_nWX9wcEOndDmcxaTEFzpCCqpkeygq0 69
immuneML/config/default_params/instructions/ml_application_params.yaml sha256=TJ5PUSyKpydea3oD5weiL8UuF-TiiZJuA2rqGDeYdZY 37
immuneML/config/default_params/instructions/split_config_params.yaml sha256=O3DhFWJjgtfpuWVbBFFLNPoUrG6pRNYSoDuOS5nNCHo 62
immuneML/config/default_params/instructions/subsampling_params.yaml sha256=FF0AHJC7oZxczN0mZj7Pbw0rJU1SggqsotjUsEzt-Rc 30
immuneML/config/default_params/instructions/train_gen_model_params.yaml sha256=jGbV_aGeQffmEC8GUl60jdrTZryOl3gmt5qXVx9oeZc 144
immuneML/config/default_params/instructions/train_ml_model_params.yaml sha256=tLnM1-H3osag_XJgLgQcD_1JNeZluHkTNN1ChMtsXfc 1040
immuneML/config/default_params/ml_methods/atchley_kmer_mil_classifier_params.yaml sha256=sRoh1FnfPzmJURlkqB0eHrYLv_-CU3QUZB02EbAGFrg 196
immuneML/config/default_params/ml_methods/binary_feature_classifier_params.yaml sha256=Wu0-EvS7fwDGKNnaY_WKAA2fraIKSz7S7HK1zmVqxPg 83
immuneML/config/default_params/ml_methods/deep_rc_params.yaml sha256=7lElQ64g0t3rU-9tgQYDubpFKorcqBMQmLIb0MoWAF0 687
immuneML/config/default_params/ml_methods/keras_sequence_cnn_params.yaml sha256=n0pWDZJWs-ENOV6k2MINvmCD8CEsAD1VvmA48U97zzc 126
immuneML/config/default_params/ml_methods/ml_method_params.yaml sha256=qxZHJg56cYvfU9RxpVCLznT_2Sn7SFP12oY-x5NZL6A 268
immuneML/config/default_params/ml_methods/probabilistic_binary_classifier_params.yaml sha256=AVk_k8pcjjpVYW3J61GrdNdZYg_WqdAyRcO1MlCRo6M 67
immuneML/config/default_params/ml_methods/pwm_params.yaml sha256=Pi4q86vp9l8mtKEl1XOQjGeZrE-hD0tPAuKSF9w7uHg 48
immuneML/config/default_params/ml_methods/receptor_cnn_params.yaml sha256=PVwAIV63TVt74k63auimrCF9BkfXj8-ubyGfbXChudU 307
immuneML/config/default_params/ml_methods/simple_lstm_params.yaml sha256=krAAsIniMveKjkVma0G9L7psbJD4xNaKeN65Y1g7J6I 148
immuneML/config/default_params/ml_methods/simple_vae_params.yaml sha256=NdepiZZlRkTrsdbyPjezE3Wyf-ThQo7cD8pa_Ad0RF4 353
immuneML/config/default_params/ml_methods/sonnia_params.yaml sha256=GXK71lUVVKNAtDH0qawcBhgKCdKcBgLhXY8WnKzQHiU 81
immuneML/config/default_params/ml_methods/tcrdist_classifier_params.yaml sha256=F6TopVTX48V7oT_VicbbBs5k66Y9OBnBe2gNXVsXkzc 15
immuneML/config/default_params/motif_instantiation_strategy/gapped_kmer_params.yaml sha256=2S1b7gxV33HxU-ccSpUuRO3Km2zQ4pxvx3hXepmYPPI 105
immuneML/config/default_params/preprocessing/duplicate_sequence_filter_params.yaml sha256=VpBq203Cj85f4bnyvCZ6i2u-_ve7NXPo7fiE1AMzRpI 70
immuneML/config/default_params/preprocessing/sequence_length_filter_params.yaml sha256=Tq3rjbTVuZB0IB5z0-aavzGZr4hzVJDFEiPN-hqzwb4 71
immuneML/config/default_params/reports/amino_acid_frequency_distribution_params.yaml sha256=USKwzg-1lCtthSIUpOq0qYBsWyVuQBaUsJmxVziLRv4 100
immuneML/config/default_params/reports/coefficients_params.yaml sha256=WI0FB5PdifuuEVz6JC7G-H_L_293s7jEZda_1iWRGfc 131
immuneML/config/default_params/reports/cv_feature_performance_params.yaml sha256=XBC0fCMjOF0qHUr8v60P8HjGCw-z6Ybh2HEE0s3bAco 125
immuneML/config/default_params/reports/cytoscape_network_exporter_params.yaml sha256=mylpEC8U1r3wsnK9uRSXmjKYdtqAE8zCEOlg76g_Q5g 340
immuneML/config/default_params/reports/deep_rc_motif_discovery_params.yaml sha256=03Vs5nGp2s-9R8reh7DXUDNAAzOzUBEAH3mKCPanA_U 26
immuneML/config/default_params/reports/design_matrix_exporter_params.yaml sha256=gXyiYWeqlG5psbXmmy_bj-EI3T94zzyuyLEkRwjpm_w 17
immuneML/config/default_params/reports/feature_comparison_params.yaml sha256=38Wd1VMq4N4UONR7X017Wx79eKcHY_-4v3tUzvzrU70 69
immuneML/config/default_params/reports/feature_value_barplot_params.yaml sha256=3IEqOLSkVgOSHlVewAcT0PSOpUqdj0w3z0SErBQAoYk 101
immuneML/config/default_params/reports/kl_gen_model_report.yaml sha256=SzSqG565BcKg4kiE9wVuOfksSOpNzWP6FgeCcBvPWxo 20
immuneML/config/default_params/reports/ml_settings_performance_params.yaml sha256=MHV_XrDxJrr3pWAzYKHx8LlbQKGpjRpUOsEFidgkfZA 73
immuneML/config/default_params/reports/motif_generalization_analysis_params.yaml sha256=1i4_pyuwGHxdp-5jeUhhZ69iJTR8lEA6yY9Au0ZYeGY 388
immuneML/config/default_params/reports/motif_overlap_params.yaml sha256=RJWYz18K8C9jwk1D6JKe_psHt72QxisIfgyU7E5saJo 81
immuneML/config/default_params/reports/motif_seed_recovery_params.yaml sha256=WxTbtOEnLXr5kCYdRU8jIJ9HZSfd72f7mSFKwk7QX3w 38
immuneML/config/default_params/reports/motif_test_set_performance_params.yaml sha256=AXLNqJdvKEWeKyoMRUH3LSo0HYhRSIkVQNUQvhN0i4E 218
immuneML/config/default_params/reports/receptor_dataset_overview_params.yaml sha256=ZOeoh05xNcLjFdU_JcrRULJi8RCB5IL70Na-4eedgLo 17
immuneML/config/default_params/reports/recovered_significant_features_params.yaml sha256=65emSUGf1KT_SoH0xV84SswuyBhp6hofXY594PzGYDw 28
immuneML/config/default_params/reports/reference_sequence_overlap_params.yaml sha256=F0oHZKc8bOGN46AdCQyM9JhJ3DrmDjVqoyBqVwHjfF8 51
immuneML/config/default_params/reports/repertoire_clonotype_summary_params.yaml sha256=KWhG8CqF8w60dH5rc-XqJF0wPr_mZ6l90nY0UM2wxt8 33
immuneML/config/default_params/reports/sequence_count_distribution_params.yaml sha256=KWhG8CqF8w60dH5rc-XqJF0wPr_mZ6l90nY0UM2wxt8 33
immuneML/config/default_params/reports/sequence_length_distribution_params.yaml sha256=Pi4q86vp9l8mtKEl1XOQjGeZrE-hD0tPAuKSF9w7uHg 48
immuneML/config/default_params/reports/significant_features_params.yaml sha256=D_Sp8pk-DNR-eZmHve_pxXMn6qDXH200YbPzjm4-xdE 16
immuneML/config/default_params/reports/tcrdist_motif_discovery_params.yaml sha256=i8uo6RDT4rQzDMAUvGQEqPUqkoWMttItj8LlLA5y3tM 60
immuneML/config/default_params/reports/vae_summary_params.yaml sha256=AVaYuDCxttngIUTiblyNCqjzziBeJCzGNRMgGog_ZeY 36
immuneML/config/default_params/reports/vj_gene_distribution_params.yaml sha256=KWhG8CqF8w60dH5rc-XqJF0wPr_mZ6l90nY0UM2wxt8 33
immuneML/config/default_params/simulation/ligo_sim_config_item_params.yaml sha256=aaqx4KS6A5u2aufiUJUYuq5USex4V-Zp-lEzij_fqys 248
immuneML/config/default_params/simulation/ligo_sim_config_params.yaml sha256=ESMyfZyNdTDM1GtsGYBXaN0Gb2xYunan--vpAlmt2xQ 200
immuneML/data_model/AIRRSequenceSet.py sha256=OeEPo0IK1LJnntSEU8i4V01yFI9BwRQgvrFJthUfrwk 6701
immuneML/data_model/EncodedData.py sha256=d94zwkdV0IfQRCBAZqZttANfo-WC3XpdHWCnfBWTL2k 4363
immuneML/data_model/SequenceParams.py sha256=WtMwqrBT0Twg3M9BJ3ZaUdzuRsszD7QBOFjlT0Z9Bcg 2723
immuneML/data_model/SequenceSet.py sha256=8xZbuxF8wX5Pf7MxSgiObDt-yqsaSM0F5F5tc76TX2A 14221
immuneML/data_model/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/data_model/bnp_util.py sha256=pC4pSGQb4PzKFbPomnApdLu2tv7xT736ZCaKGswCVqQ 9448
immuneML/data_model/datasets/Dataset.py sha256=pFBpjQV0RPWsnlzQhliFx1h20v-vRSrZF0r-ggHoQNs 1460
immuneML/data_model/datasets/ElementDataset.py sha256=fFhKMcaBmbPtu3oJni1WS-I2wJ7-DlWAb1uiSRHXMho 13718
immuneML/data_model/datasets/RepertoireDataset.py sha256=K8Jzw45EgfzTZNxvG0BZdoA2xxRTbQPdh1Typwa0ZL4 10402
immuneML/data_model/datasets/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/dev_util/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/dev_util/util.py sha256=zo1pq-emaPhVjoSqHc4Mrj8HpXgiVpYzzi8mUjowrPo 1765
immuneML/dsl/DefaultParamsLoader.py sha256=MVZpX8TTuToeDF6VqrK0GaSCE5dqi_TJs9MCtiavFfg 1920
immuneML/dsl/ImmuneMLParser.py sha256=ghTEOG5UKotLDXDj-tn_u0Ngza2FwmSHmfwTd-sdyxs 7460
immuneML/dsl/InstructionParser.py sha256=lJI6ME5z2sNxVw-IRYxwwDOy8OrGvENuUOtCNmE1zho 5885
immuneML/dsl/ObjectParser.py sha256=krKVwDx79e_Lmp60yMfkgaXTCO03RNqeThWwzkXlJtk 3917
immuneML/dsl/OutputParser.py sha256=NicGB_Jpda-6Rs39loUG49AwepEIwvdL4MGYxPjLKzo 1225
immuneML/dsl/Parser.py sha256=HlpxDjeZGj2QeYFcgvaQSSj8GoslYm0fgGzdRjIyWVM 139
immuneML/dsl/Util.py sha256=XHTWIOjRwjSRGdU8cwxzaW8jr0An9t7m814hKpS86cE 847
immuneML/dsl/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/dsl/definition_parsers/DefinitionParser.py sha256=7pQoC82fckycx_CELCpeyGeyP_U8az-GvBH9k6d7ZC8 7731
immuneML/dsl/definition_parsers/DefinitionParserOutput.py sha256=WNS0z1sr0MD0Xfa-uq8apltrHVz4dS7kHUEQxB2dD3w 637
immuneML/dsl/definition_parsers/EncodingParser.py sha256=WDZs7Ppj5wldckTVXN5SWEMff5GDUGyGEGZItmEhwZk 1522
immuneML/dsl/definition_parsers/ExampleWeightingParser.py sha256=ed1i70-W0O4INVrSLXFJLTZI0YnXR_Wg7cwQzKGBGDU 1756
immuneML/dsl/definition_parsers/MLParser.py sha256=Fc-9s3BaLbyEq-wodsPdUwNbMTS-Tz8XkV7zUm_39AQ 7118
immuneML/dsl/definition_parsers/MotifParser.py sha256=zfRXWLVRLAZ89EOTmyEz6akjlz0CiPi79g96D8K1IyE 2316
immuneML/dsl/definition_parsers/PreprocessingParser.py sha256=M2dQa5VQoo6mG6MPjoRc0Uj3TBScmS_obkGh6T7-K-4 1377
immuneML/dsl/definition_parsers/ReportParser.py sha256=v9jF0qwKpO6BawNd7lwx_bLtVWMXDx_ySgOvUZObSLQ 1219
immuneML/dsl/definition_parsers/SignalParser.py sha256=hvvzNL7-11-tbF6YUAV5SXJ3DI8CtNAywuTduf2gW5U 3938
immuneML/dsl/definition_parsers/SimulationParser.py sha256=uh3sSVw0OJkVzp43reScBGpqPW0-EUsGDK25RRJ7-0s 14168
immuneML/dsl/definition_parsers/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/dsl/import_parsers/ImportParser.py sha256=jWPQCvOmoK9iEFwLsaoja0iqI6OR6EgAcFMSRh_Kjok 5110
immuneML/dsl/import_parsers/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/dsl/instruction_parsers/ApplyGenModelParser.py sha256=gGwnOcpr_0UBUObKB_7zoFFx9lZQMohzKz3BjMuAwgk 3533
immuneML/dsl/instruction_parsers/ClusteringParser.py sha256=AJ6vi-DO_g6wRHzVhSfnSD31AHtDYJt86hgfHi8x9Jw 10235
immuneML/dsl/instruction_parsers/DatasetExportParser.py sha256=tzCVHljR6oyDm3aI5XmxUWogGWKBznqmRCP6EVPn69w 3539
immuneML/dsl/instruction_parsers/ExploratoryAnalysisParser.py sha256=t60gfuPu-LKvCBbonBMo7hSydfB-WYDDOppy7wW6zRg 5625
immuneML/dsl/instruction_parsers/FeasibilitySummaryParser.py sha256=vyuhrRCHtLM4R4MF9EreJRQqwE1wD9ngHPbbqpDN9Uo 1433
immuneML/dsl/instruction_parsers/LabelHelper.py sha256=Kt0A8JwJ8gxuIUgyZBrr82YffnIBk5z3po8--rvBtnA 2826
immuneML/dsl/instruction_parsers/LigoSimParser.py sha256=fCHSJCbLQJY0UhDrpTsK21y6ZeNwNqhzv50X17CkHwA 1914
immuneML/dsl/instruction_parsers/MLApplicationParser.py sha256=d-bnKmVK51KJahgAmxui5lp0Ud-75STd5NSGXQpSwOI 3342
immuneML/dsl/instruction_parsers/SubsamplingParser.py sha256=nmtlin281M5RhThyMehRCojsf06McszB8YCdOK-ZuK4 2323
immuneML/dsl/instruction_parsers/TrainGenModelParser.py sha256=2zGxlfBnuTjwuQVY9-EKwNd9VUtUVOWCfJCXHgRgvs0 3297
immuneML/dsl/instruction_parsers/TrainMLModelParser.py sha256=QgkBklmCPlLdTXPkeFrsp0kflZC4NFDuUPyOmxTc5RI 16927
immuneML/dsl/instruction_parsers/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/dsl/semantic_model/MLResult.py sha256=0ikp_QmPfWzKw--nFVpto-B3xmf96hPwB3MRuyUIm6A 72
immuneML/dsl/semantic_model/SemanticModel.py sha256=vAoXNQSeAecubYnTh4_v8wEvbwxKmCC0cyXgkxRIsDU 1882
immuneML/dsl/semantic_model/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/dsl/symbol_table/SymbolTable.py sha256=O_CA4dYJ6k0JmhUQaVCPDkOUlfjE9WO6CqA_-FkDEl4 2513
immuneML/dsl/symbol_table/SymbolTableEntry.py sha256=AxSH5eYQZ5JFiLtO2jhEjh2P16tIHWUvJGTiOtfLVfQ 298
immuneML/dsl/symbol_table/SymbolType.py sha256=WFteUxJYYN97cobsUBqckAjxP3vfsRAQLGuAA7_nc4M 239
immuneML/dsl/symbol_table/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/DatasetEncoder.py sha256=q0hmQWo5bVUVlIjdQav2Rm4rxGMmz4l1N-mToA3L_uo 7934
immuneML/encodings/EncoderParams.py sha256=jetQiG9yubeNFXvRd6dInXqe6sUdMiNl8usil_5Nnv0 875
immuneML/encodings/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/abundance_encoding/AbundanceEncoderHelper.py sha256=XrV_GBY9O_9RagexvRplZe28z9sCHHlv2eIbLysPxBQ 5959
immuneML/encodings/abundance_encoding/CompAIRRBatchIterator.py sha256=OeMJfNkNoNJhLSOfifSxoBaBFOdMuythgs5oKk3RwNA 1757
immuneML/encodings/abundance_encoding/CompAIRRSequenceAbundanceEncoder.py sha256=QmARKroX4SsCpr3SAF3I8FBafahanF1Nad2QXDj5810 19859
immuneML/encodings/abundance_encoding/KmerAbundanceEncoder.py sha256=RvXZoMzOOw3qomYp_V-42v5exY0-h50IiZisb1etxTc 13764
immuneML/encodings/abundance_encoding/SequenceAbundanceEncoder.py sha256=QdBfTxH5KtrlHPsaFSvfxBu4br6Sy7lr3viiwiXLQ0s 10579
immuneML/encodings/abundance_encoding/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/atchley_kmer_encoding/AtchleyKmerEncoder.py sha256=D5gDIqKvEAkxactYgbh0ybGC96MofgXJSUCD7Hag3_w 10538
immuneML/encodings/atchley_kmer_encoding/RelativeAbundanceType.py sha256=DCOuNpVHsE5hhUr3MWz6vOwKAGBksKa3TdJnmXayrS0 162
immuneML/encodings/atchley_kmer_encoding/Util.py sha256=pDJLKSqxsO58UC2ND21RsdpUTig2OKZW7ocCoDlfSKc 5766
immuneML/encodings/atchley_kmer_encoding/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/atchley_kmer_encoding/atchley_factors.csv sha256=ObjIk_2bHOqe6vE46s8YK_pgbEfwj_zJNAUtB9wglWM 751
immuneML/encodings/deeprc/DeepRCEncoder.py sha256=EhzU016qZPCcGoFl-IFYcwGu8czvQ2RsRdkq-gw3WhM 4893
immuneML/encodings/deeprc/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/distance_encoding/CompAIRRDistanceEncoder.py sha256=bz5pU2lvyQC3Jt-RhhQ7j0hSV-lUMgF-jvwqNicZtEE 12101
immuneML/encodings/distance_encoding/DistanceEncoder.py sha256=oMVAqaJOUBzt1Xii_5a-j1qZ94qEjTvxn_ofakjFdTc 6946
immuneML/encodings/distance_encoding/DistanceMetricType.py sha256=1rL2etXBgsTSgdCiSEd5V7ECach6hSJyxrBlqeaf9VE 116
immuneML/encodings/distance_encoding/TCRdistEncoder.py sha256=jhs14dpu52yZMzTOpouUoQWjUilDOdnDrGfTHr2HKHY 3519
immuneML/encodings/distance_encoding/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/evenness_profile/EvennessProfileEncoder.py sha256=IBDXHmT2rMdV6FsAv7acSEzrGsGBOHgyyMiYVhwxzyI 5455
immuneML/encodings/evenness_profile/EvennessProfileRepertoireEncoder.py sha256=CIdEvXcYC5RLoSbE8orEHXZRw6RMhPeOwAyHLIODPFc 3322
immuneML/encodings/evenness_profile/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/kmer_frequency/KmerFreqReceptorEncoder.py sha256=uFwrgh1jgws_bwaDKF4_AYGYQNx8rt2tKzNe5g9wQNk 2284
immuneML/encodings/kmer_frequency/KmerFreqRepertoireEncoder.py sha256=GASXsxwXGFCBk4gV80tT37eKFQ2KUHjYacQRdap4WAs 2940
immuneML/encodings/kmer_frequency/KmerFreqSequenceEncoder.py sha256=gnX1qjdOWK0CU4hYU1fwK6-BEccBS6mHzOeK3RVQkNI 1415
immuneML/encodings/kmer_frequency/KmerFrequencyEncoder.py sha256=QghstPqvG75-NpAlZR8roDhgVR0DmjbvPUdlqsSjNvY 15981
immuneML/encodings/kmer_frequency/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/kmer_frequency/sequence_encoding/GappedKmerSequenceEncoder.py sha256=0gW_XN9yt4HXEh5Un_QY6Mk1YqaPlj1axWE1gbe7tsI 1970
immuneML/encodings/kmer_frequency/sequence_encoding/IMGTGappedKmerEncoder.py sha256=lCYZPktEcsz3-FVnAoUPovAyFYp2uo1MeI_aJ6AzC6Q 2392
immuneML/encodings/kmer_frequency/sequence_encoding/IMGTKmerSequenceEncoder.py sha256=w2coVE061eYdyal4F-w6kjm74rSA1iNMGj6D5RxSSRA 1860
immuneML/encodings/kmer_frequency/sequence_encoding/IdentitySequenceEncoder.py sha256=8L3yJtIC77OJT62N7ogcXmrQsw5HclaHl0XIkEXbjMo 1819
immuneML/encodings/kmer_frequency/sequence_encoding/KmerSequenceEncoder.py sha256=yxl7jygox690h3SwHlnENdXt6FZtM2KJGLDuDXEsx9c 1256
immuneML/encodings/kmer_frequency/sequence_encoding/SequenceEncodingStrategy.py sha256=IEtdh7eIzKBn8z68BPDqMwLR-45u6Mb7H_DQgqZZgeQ 427
immuneML/encodings/kmer_frequency/sequence_encoding/SequenceEncodingType.py sha256=UCm9dbSW6n8qUVHuJlw0K61fswj01exnIACNrkiri18 289
immuneML/encodings/kmer_frequency/sequence_encoding/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/motif_encoding/MotifEncoder.py sha256=cdxHlJg1BFsuE5dc964IwShs1O7d9X67KnHWV4Lp5p8 22857
immuneML/encodings/motif_encoding/PositionalMotifHelper.py sha256=M6uu5QbeFUEo7Qimu5qTJ89lNSeSIwqIn65u73ymJp4 16939
immuneML/encodings/motif_encoding/PositionalMotifParams.py sha256=hauwMDcSnwZYtF2_4ZfmGYguxmiUoA30vgVC8MuLZns 232
immuneML/encodings/motif_encoding/SimilarToPositiveSequenceEncoder.py sha256=QG6lmZFo4LCe8XGY4sOG6Z2XmEPyAPVCcqb7cPPoZc8 12459
immuneML/encodings/motif_encoding/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/onehot/OneHotEncoder.py sha256=XP45Z5orFiR1O7FDduKfVIDZwxNWJQ6MJH2yHV1dLYo 11931
immuneML/encodings/onehot/OneHotReceptorEncoder.py sha256=C3mpvfE5yzdEg0RIYVzGUN-qyJBLXRNjTDEALIYtGSE 3305
immuneML/encodings/onehot/OneHotRepertoireEncoder.py sha256=0TtuALTtA4tNclQorFNZ58bnuhd-mxMU6C0IS2Dj8S0 4781
immuneML/encodings/onehot/OneHotSequenceEncoder.py sha256=fbYC0K6MwQrMbJvPONCyA7S72T4C3QL3WQgKR9pgMTw 2503
immuneML/encodings/onehot/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/preprocessing/FeatureScaler.py sha256=QrD_S0_hG9md0tHtF0_i2q9xYFdZ5H4Mn3-vJlp8wbQ 2922
immuneML/encodings/preprocessing/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/reference_encoding/MatchedReceptorsEncoder.py sha256=MumLotU2yaYx0ttezf-HgCho6AkX6GQj-wOrsNzLONM 15270
immuneML/encodings/reference_encoding/MatchedReferenceUtil.py sha256=M2E-c1R4-mkp54bCdq_eaWwTQtbUkcvC44b3txBGxmk 2857
immuneML/encodings/reference_encoding/MatchedRegexEncoder.py sha256=pfs4Y-99Uw9q8oU6lBdZXR5be07dvM-SH-iWJpbVOz8 8471
immuneML/encodings/reference_encoding/MatchedRegexRepertoireEncoder.py sha256=yiV6j2G3CGFGkY4SwmGQrpZEp2chs59Qrc4AgpwuYKc 5199
immuneML/encodings/reference_encoding/MatchedSequencesEncoder.py sha256=E06l466ex9BP6kHJqkjAnDOUValQokN09rNubKhmbhY 11687
immuneML/encodings/reference_encoding/SequenceMatchingSummaryType.py sha256=GHPflIu0h6LZIAlv74dr52E2fkhanJA8L25DekBvJcs 124
immuneML/encodings/reference_encoding/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/word2vec/W2VRepertoireEncoder.py sha256=eC9J_Z1t5Vx523zFKrkIlMMsDXsyd2LWyEL6KSQus0k 1513
immuneML/encodings/word2vec/W2VSequenceEncoder.py sha256=6NJ3ApKvvmdvL5gp7tKjqJOyDusjS2TNfpvlcTdLFVE 1223
immuneML/encodings/word2vec/Word2VecEncoder.py sha256=ZW45xVSRiGUGHw3fjFVST3tY7Tq3sKPIuD-iHCfxEBI 11958
immuneML/encodings/word2vec/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/encodings/word2vec/model_creator/KmerPairModelCreator.py sha256=BAVape4wEpL9IrhFbyE4NA3rJNkPmifYE8RKo6cUa2M 1388
immuneML/encodings/word2vec/model_creator/ModelCreatorStrategy.py sha256=Q5m9PBTsTb3f9Jw_Ys_OfSaFW7mlb7KI21WNAg6OA6g 623
immuneML/encodings/word2vec/model_creator/ModelType.py sha256=uRQmeT6DDkLEofVAZcKF3dK7lBXzERjpW6b978OA8_E 83
immuneML/encodings/word2vec/model_creator/SequenceModelCreator.py sha256=KgocD5rjRvWYjgg3vN6BPkr_42ckm1ytpdKwRSpBiY0 2176
immuneML/encodings/word2vec/model_creator/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/environment/Constants.py sha256=9uEujI7Q7edwR62Ac3mTId1KveOigzREsNVURo5TWZQ 432
immuneML/environment/EnvironmentSettings.py sha256=Vb93UafsCpT8ZT5GLLrM4cJzJQjdqv4pBOJ9X2kLf_Q 3501
immuneML/environment/Label.py sha256=ubxtxx1TYre8i2bTuwsSNJtIcb7lVEDoFE3k0xS4ToI 2547
immuneML/environment/LabelConfiguration.py sha256=Db_Xzct8QIlu3Px1mU-zRkHgYXJ4mw0jDXfqvLsDON8 3367
immuneML/environment/LabelType.py sha256=OxZ923GDY22GWE-9uUIsd85DFgftsNsjaUgrCfh5UnY 89
immuneML/environment/SequenceType.py sha256=pxU5TTMf-dIkOWfR68VV_7fdhltVsXVykO1ShM_SQ7A 109
immuneML/environment/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/example_weighting/ExampleWeightingParams.py sha256=2LW7OVeJ57fxYJVgzRgYA-MXjvoeiLyWoirM-8IneFs 176
immuneML/example_weighting/ExampleWeightingStrategy.py sha256=mnMNJVHMQmOKQ4LZ6w_g0WrgKEq5LsXzlkqBIZPLtSE 479
immuneML/example_weighting/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/example_weighting/predefined_weighting/PredefinedWeighting.py sha256=jMjf1VU9_babeUETOyZdhv4kK6JGEFc7jrS_zzZlSSU 2520
immuneML/example_weighting/predefined_weighting/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/hyperparameter_optimization/HPSetting.py sha256=dt932Te-y8UPXWLgThrH-W_K6CljcwXMbKpKYM-jCUI 1054
immuneML/hyperparameter_optimization/HPSettingResult.py sha256=4qrr9faSPgb_8aGDGpbjNhPWa__fYhNK9l0Im02eoPM 688
immuneML/hyperparameter_optimization/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/hyperparameter_optimization/config/LeaveOneOutConfig.py sha256=IJpxkIuxL0Y3BQgB3l460dxHUxIljuyWekVECWF17H8 125
immuneML/hyperparameter_optimization/config/ManualSplitConfig.py sha256=zDQZ34LdGCGsua9U1J9qIRSCjFVWTy_xDvHlQyaiDPs 171
immuneML/hyperparameter_optimization/config/ReportConfig.py sha256=xfZWeIevDX_W6SD77rRat-F9qj_quuxZo9WBqdc8Bvg 3541
immuneML/hyperparameter_optimization/config/SplitConfig.py sha256=eHOqy8kE7fSZvHGo9VG0UDVUgcEt3ejnE0Ll6eCijnw 7691
immuneML/hyperparameter_optimization/config/SplitType.py sha256=XBm0xudtGOqndcdpcWpFXlxZkqticH_2YjmP2xOwGaA 170
immuneML/hyperparameter_optimization/config/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/hyperparameter_optimization/core/HPAssessment.py sha256=Db-Zc6kPyMN_w1E0vVbgcsjXBpbh9ufElpWvOrZjD5I 8857
immuneML/hyperparameter_optimization/core/HPSelection.py sha256=a9S5CvXz_7GjoiMD8wk9E8uBnOgQ3Rd1Qwj-kksupuI 4877
immuneML/hyperparameter_optimization/core/HPUtil.py sha256=N68C905NhGO81aW1xe-mECVl_WVupRLoUhfIZDim3iw 8146
immuneML/hyperparameter_optimization/core/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/hyperparameter_optimization/states/HPAssessmentState.py sha256=oWAlQuk-WMgYF75XGtVmyXhqgxhed1ZmRE02SkMscms 797
immuneML/hyperparameter_optimization/states/HPItem.py sha256=N8Jhd_yNGoUhlHJAg4UXiASdCroa8AjKPTqWNUrRS5Y 991
immuneML/hyperparameter_optimization/states/HPLabelState.py sha256=Yb2azMrTTusw9NoqWctqW4pHxlr0Cp7f5EAW4UZCTCI 478
immuneML/hyperparameter_optimization/states/HPSelectionState.py sha256=Qett-zFDxJ1HjexfFYO9jHR95W4Ns4HESH_kavaT88U 713
immuneML/hyperparameter_optimization/states/TrainMLModelState.py sha256=Bgz-r10APaCfqAh7m4921LV9xehYpOhXGl1RINKMGiM 1974
immuneML/hyperparameter_optimization/states/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/hyperparameter_optimization/strategy/GridSearch.py sha256=5wqGxaPA3PaHavcT3dSDWUt7d6fw49mRT7TOkYea-bY 2328
immuneML/hyperparameter_optimization/strategy/HPOptimizationStrategy.py sha256=ZcbJnBq5GHKA5dn_OnrpQcsymRD_nez5w01A_NnVOO0 1598
immuneML/hyperparameter_optimization/strategy/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/ml_methods/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/ml_methods/classifiers/AtchleyKmerMILClassifier.py sha256=eBWp-8tZbIQx3w0Juy5Xpf3c1ijn25eCPTrusidRzP0 10046
immuneML/ml_methods/classifiers/BinaryFeatureClassifier.py sha256=SUsCIVUgvzXhlAjhdykkgTsUsiQcwjIYYtSWWcZ4J1Q 18194
immuneML/ml_methods/classifiers/DeepRC.py sha256=it4Y1RyApDkXG8LCvMvcCshihFHTkkIWixtmWpAtT18 23867
immuneML/ml_methods/classifiers/KNN.py sha256=3EeXURmuv9meBj60u8mVbdFUDjoHHTEC7U1yEeBRyls 4024
immuneML/ml_methods/classifiers/KerasSequenceCNN.py sha256=9PHr8C-keBw-F698HDk-bkHDC6UrbDDlse2xYnQOVYs 11035
immuneML/ml_methods/classifiers/LogisticRegression.py sha256=0oDpLynlqT5nDW6hRDmmN49afiWetpQjMwXEZW_ESw0 3413
immuneML/ml_methods/classifiers/MLMethod.py sha256=4RPeBHoJAD5AUoZHc7TmGLhM46Ppg8HpUMdYH26BayI 16100
immuneML/ml_methods/classifiers/PrecomputedKNN.py sha256=5iCW8KgKRFfm0GmCmSXR7TBNVlM0EUMHDdwguTnPwNA 3375
immuneML/ml_methods/classifiers/ProbabilisticBinaryClassifier.py sha256=rYDIVb0XyNRodP3xHZua0v3hfAsh3-kDb-26mZWXi54 19287
immuneML/ml_methods/classifiers/RandomForestClassifier.py sha256=0JK0EYBIMjmqViubbHJek6liNGhYsvqfmOud9GYNM9w 3316
immuneML/ml_methods/classifiers/ReceptorCNN.py sha256=TcYYxTcvo1wt0quMR9om6z0zRPHvbvXVwauaX5BMxyE 15917
immuneML/ml_methods/classifiers/SVC.py sha256=CReW4bfw-qVc6nIBIaQlfe2_V8XlUuGApkxj1aGZ4VI 2855
immuneML/ml_methods/classifiers/SVM.py sha256=G95jYjhj4KInl69EYfuz_ghqM2j0VzdjoclbdkKsX0c 3016
immuneML/ml_methods/classifiers/SklearnMethod.py sha256=uf185tOOMe5obElhhsjsv3oXk5niReYbIxb2UCAbs1g 14299
immuneML/ml_methods/classifiers/TCRdistClassifier.py sha256=Nsj3PoOeueI6L13expbs3S4QJlhE-WGGrc58QsO_Z28 3076
immuneML/ml_methods/classifiers/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/ml_methods/clustering/ClusteringMethod.py sha256=D64BL097974UI0Jm-mGgDKbyUT_eu9H2oZT-aZgSwRY 951
immuneML/ml_methods/clustering/KMeans.py sha256=0N-ld8tuc0obZDZ9lsY7tEquBszOc7dgqDWpiDkUJdA 1328
immuneML/ml_methods/clustering/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/ml_methods/dim_reduction/DimRedMethod.py sha256=cT5pjTHOhwpQrQOPb7XLgLw655ZMFZi6-9fwUnXzlQk 868
immuneML/ml_methods/dim_reduction/PCA.py sha256=7EYvr2cS_NCrw858LZqexz3dLcOhQuppIw0KiBPmmI4 1345
immuneML/ml_methods/dim_reduction/TSNE.py sha256=rXc_g71XOqnHKvcCkMmwJdmt4h_0Ot5EUTfGJHdfs9k 1650
immuneML/ml_methods/dim_reduction/UMAP.py sha256=GiTsqmNYDxrFerBXbANrBJ74oBmekUW5jeosAOGMPCc 1565
immuneML/ml_methods/dim_reduction/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/ml_methods/generative_models/BackgroundSequences.py sha256=w-hAjzv8TkiXTtR5ceLTyTHNjrQAKMp4OpXmgqm_5xU 727
immuneML/ml_methods/generative_models/ExperimentalImport.py sha256=V-3jKvPtZ4LLYR2aoTk8ZzrF1ZGySeEtN7B3Rl87BHI 4551
immuneML/ml_methods/generative_models/GenerativeModel.py sha256=pL29OYU_ola9IXHFjkEXDXVICMFtLFITedH7dWdlKWM 2088
immuneML/ml_methods/generative_models/InternalOlgaModel.py sha256=revGgI7RG4UaaZDvd4NwwWCtHenR0p6-HL9o-4RGlFA 510
immuneML/ml_methods/generative_models/KLEvaluator.py sha256=5eG41MzzEdJlviw8PQp39n26yfjieaSqy8_5s8cNGVQ 4652
immuneML/ml_methods/generative_models/MultinomialKmerModel.py sha256=B-IQECglm9We9WKolqE5KowdzqRxf2bcjTHUX32-e1Y 4763
immuneML/ml_methods/generative_models/OLGA.py sha256=ylMOxnp3lfIe-wlYVKpx4MTFuTpTInMcin6H_qgi8ts 13830
immuneML/ml_methods/generative_models/PWM.py sha256=XvFSBjkbX9kYc_L4XYjDI0oDyQKYNmYkV0TY0lRc11M 8318
immuneML/ml_methods/generative_models/SequenceTransitionDistribution.py sha256=-fZDJhpgbOd89raO7mdh3G5fTECTxownyM_RsXBGyHQ 6245
immuneML/ml_methods/generative_models/SimpleLSTM.py sha256=dEQc7DxhxaqcJhjdHQ4u54AQTDdoYAkB441qOF0A5sM 10828
immuneML/ml_methods/generative_models/SimpleVAE.py sha256=PmuLczob5wWalveD1m8h_mJpE3Jj4BWcxoW4GN4WrOg 18234
immuneML/ml_methods/generative_models/SoNNia.py sha256=h0KO6cchB5u3U4d6Cg2fWlQHB8dEA5ip9-TUSEEGkJs 7887
immuneML/ml_methods/generative_models/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/ml_methods/pytorch_implementations/PyTorchLogisticRegression.py sha256=7BMH-L-zRbGFxBFPA1PC9wsJQovD8zorZy-GEV2Wb3Q 531
immuneML/ml_methods/pytorch_implementations/PyTorchReceptorCNN.py sha256=F2eu1llc6dd0yS5HzRjLpPkDYLaOD-V7J8JEBWlB_Zo 6058
immuneML/ml_methods/pytorch_implementations/SimpleLSTMGenerator.py sha256=2l_QV39nx_QT0QqwBIIAf5Lib9eosNWtz2G-U0zjuK0 1240
immuneML/ml_methods/pytorch_implementations/SimpleVAEGenerator.py sha256=COaP44qfm-iQ-Cev-zYND2Llqj38BdiZYWsKw-ee8uU 5019
immuneML/ml_methods/pytorch_implementations/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/ml_methods/util/Util.py sha256=dOEqce7OVfRhcNqaQqLtI5NqOLtdqcjypGxeu38GftQ 5795
immuneML/ml_methods/util/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/ml_methods/util/pytorch_util.py sha256=Z4177MPF6UxA7r43ew_2aesgYSGFPlscfKomZHht3FM 279
immuneML/ml_metrics/ClassificationMetric.py sha256=6TgEM2yTR9fw_JY1R49xOvr46_L_j1MdZpSugkefHC0 1267
immuneML/ml_metrics/ClusteringMetric.py sha256=fx_CKfPR7goxmQmBphx9kycfAzOsbnhq0BjJHtNON9Y 528
immuneML/ml_metrics/MetricUtil.py sha256=xASzue88IoMT_hj4js-cgwhm0iOdmJHrex7Q2KuQl9c 2190
immuneML/ml_metrics/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/ml_metrics/ml_metrics.py sha256=4iJ4NvMmqCiT3KCuf29afvwqg71LFqQ_TSGTIpFprxc 1150
immuneML/pairwise_repertoire_comparison/ComparisonData.py sha256=LxY7nxfZ5DcbBPxKaoLrHRE9Ya-SJLrWDUasmzWJk4s 8614
immuneML/pairwise_repertoire_comparison/ComparisonDataBatch.py sha256=_Jun20vI253OUe-EO2EZF0w2K8-2VVbiiZflVLMys_U 2509
immuneML/pairwise_repertoire_comparison/PairwiseRepertoireComparison.py sha256=lX9HesPafU5SEVXMcEf9FvRXPE6xGa_bc5pTMCZro4I 3437
immuneML/pairwise_repertoire_comparison/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/preprocessing/Preprocessor.py sha256=0Ig8vB2_511nPcjrCw7nDJgGWq3ZtuPw6E2MLYBxKsM 1283
immuneML/preprocessing/ReferenceSequenceAnnotator.py sha256=C-d-WbDzG5z_FCbTH8a2IVu_r8QHPy76sfdMhES90zM 10374
immuneML/preprocessing/SubjectRepertoireCollector.py sha256=aT_to0EwG4tQ8lDJmy7PphWSPAOt-4GlOd2QZQjqr3w 3274
immuneML/preprocessing/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/preprocessing/filters/ChainRepertoireFilter.py sha256=hwSXFx--UHknSmQ4cmz0G4f8AX1yvBAIM8nrFyn9Vwg 2348
immuneML/preprocessing/filters/ClonesPerRepertoireFilter.py sha256=sIw0rd16IRlBqE9qa4gAFx6Vb6vFyAclO1jXj2i3KtY 2646
immuneML/preprocessing/filters/CountAggregationFunction.py sha256=URwS6kRFcVK-M4yQBMbbNzbKfnUjXAEx8Z6GpPgRZGI 166
immuneML/preprocessing/filters/CountPerSequenceFilter.py sha256=fRUOaktf5iSGHcfs1yOvKrrJHwvl4AdvVlD73DrWgF0 4367
immuneML/preprocessing/filters/DuplicateSequenceFilter.py sha256=ARourSGgQ64d82IKLXu6jrBBvN2d5BA-Ck3_tSoHhcw 8062
immuneML/preprocessing/filters/Filter.py sha256=nr-PoieLFifCTFExneZ8QSogyDSk_EYuNjJ1aXDTLCc 1924
immuneML/preprocessing/filters/MetadataRepertoireFilter.py sha256=ON0BCNinkEZM6pNkgmHuUjaO9cdiElhchSGsHO_djbg 3037
immuneML/preprocessing/filters/SequenceLengthFilter.py sha256=RKhAhGVEMDumoB5FJ0xZeX88yWCwZn63e8EFlsa1rIo 4989
immuneML/preprocessing/filters/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/presentation/InstructionPresentation.py sha256=U97evVZKNOQ98Ljn8kBHvA-A869Pn7cevt0FYjhRcRE 170
immuneML/presentation/PresentationFactory.py sha256=cLFvTyVTpJfiYLjtAMJorNqIUoh6MirExyZ10FHhbGg 3426
immuneML/presentation/PresentationFormat.py sha256=AfeAERrhwJM0jmWMYQZT96-_FxsGNxq7gSG25rlbK_8 74
immuneML/presentation/TemplateParser.py sha256=zpy60tIrAhRNF9YY_6v8TLUpVHAwHfJpnZvXqHthnCA 456
immuneML/presentation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/presentation/html/ClusteringHTMLBuilder.py sha256=eluZwWJFgDc7nGHlTm5h2B5JYdA3tmbgFlN02Ect-SI 9432
immuneML/presentation/html/DatasetExportHTMLBuilder.py sha256=7Wu5ILhw6DAOXwfrjE7sMvN381569hDIk-VMml6TRq8 3072
immuneML/presentation/html/ExploratoryAnalysisHTMLBuilder.py sha256=IayzRP0FEpLzA5vANLHUVeFhqNxp_orGScv10ZioNts 4953
immuneML/presentation/html/FailedGalaxyHTMLBuilder.py sha256=1XTrpaXr45RkwRKrjCK5luJjDI1KH1BIvNgNWL4sEVQ 1159
immuneML/presentation/html/FeasibilitySummaryHTMLBuilder.py sha256=u_ctw3DPxKA5__DnixvMh8zIizMogwv0pzLHrIY5oUY 2915
immuneML/presentation/html/GenModelHTMLBuilder.py sha256=UuVf8o5hEFvj91X4IoCAGY_F7KhuxUHV6LCSRBs60Kg 3254
immuneML/presentation/html/HPHTMLBuilder.py sha256=CKglcAjloKW5YWkxeyU_sBy-DpqVhu9UoTNMS8RlzO8 21106
immuneML/presentation/html/HTMLBuilder.py sha256=pyMSQzMweD1ZjUPyZ_4t_7ho3OHsFwLgJo5IZOUihic 3441
immuneML/presentation/html/LIgOSimulationHTMLBuilder.py sha256=Hkt7y5uxA8YjhYEAIrk_o5ERbOjrn72Eo1tBAsEU-q8 3779
immuneML/presentation/html/MLApplicationHTMLBuilder.py sha256=Nhrqsg4t-V9lKsW_ZLinpiLI3TYAPwsG2-G7swMyvus 2328
immuneML/presentation/html/MultiDatasetBenchmarkHTMLBuilder.py sha256=dNpvuxIAuXpxS_S0ftqnz9A_b6AtQ2xn14_CqfRS8Ow 1651
immuneML/presentation/html/SubsamplingHTMLBuilder.py sha256=5yF1bnztu8OINk8TrSCc3GAkdlFa5Ru6GgVM5SgdAh0 2715
immuneML/presentation/html/Util.py sha256=IUCqtf7mEsbokzbigWGgz1CJ6kb2KzFTkxBYGTH6YKw 6268
immuneML/presentation/html/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/presentation/html/templates/AssessmentSplitDetails.html sha256=1LKnDz7i4i9a4wt73Z4YOsNFHZIeH7ufotX2VxLM6GY 7651
immuneML/presentation/html/templates/Clustering.html sha256=pkk9MJwXHyemzDtPyqpM2ngAt5q9ZQEJzR36CD_zL6I 5620
immuneML/presentation/html/templates/ClusteringSettingDetails.html sha256=5pCDvGQeVzSJOtgrL275z_yFOM2xh_-jX6FMzDmiYcc 1967
immuneML/presentation/html/templates/DatasetExport.html sha256=D_nEicJp7JPGf0f47-muyG40sLkNZNk-BItLs4VBjlE 3908
immuneML/presentation/html/templates/ExploratoryAnalysis.html sha256=vl5AyR5LdkR3VnnkyFz1LtR3YI4EqzxVks04Xgy0SjA 7466
immuneML/presentation/html/templates/FailedGalaxy.html sha256=PF8BSs7gekyVEWHRZFcCgYhfIwqEt5Q3EWDKdxyZ8so 905
immuneML/presentation/html/templates/FeasibilitySummary.html sha256=8LQY4uULizKUkgLk1djEEpH4yJd_Ku1DpvBWvgM6zck 7292
immuneML/presentation/html/templates/GenModel.html sha256=FunjANgbSXvMRUBZjlUjMeclJC38-WdJPCXn-s-tvD0 5256
immuneML/presentation/html/templates/HPOptimization.html sha256=DC7x7Ww7-EEZNK__mBB0kZkfTt8gz9fbd0MPhqsi3YI 7008
immuneML/presentation/html/templates/MLApplication.html sha256=NqnP5DOJr0YGmFrFixxDWwYZUAgv89vD4UznFjPEYEs 2591
immuneML/presentation/html/templates/MLTraining.html sha256=N2FQPd00AfxkXwd5uYLZAAv66h5Xcp0Fg5uWKmoRppM 2614
immuneML/presentation/html/templates/MultiDatasetBenchmark.html sha256=eLrgBzjcxqczeeaPUzqdE50j-QUyDXFNdsAKrXVI-zI 1799
immuneML/presentation/html/templates/Reports.html sha256=oDpcFPS0IIx9rhkVJJB9LlX80ojlWBM2gGCy_5GXaQw 2889
immuneML/presentation/html/templates/SelectionDetails.html sha256=HAHY-Hs3yP6TyBpOvDXwOrDKamltmXmC7hTCdqGO7Uk 9566
immuneML/presentation/html/templates/Simulation.html sha256=A1XOfoxNqsuhMCiMNh8-Ih6Kef9PoFe8mR8hfPrXwGU 3580
immuneML/presentation/html/templates/Subsampling.html sha256=gUSXLeJfen2VMl6u4xCu1Uy2UKctS72Z6sr277GwTBk 4191
immuneML/presentation/html/templates/index.html sha256=AImJit817OPyilPrzbDt07g9aDyUpp61TBOcI3i-7j0 688
immuneML/presentation/html/templates/css/custom.css sha256=KbGCCAjjCy-eBN_YbDf77OTfOI-7i1zOxPPO7n09uMo 3031
immuneML/reports/PlotlyUtil.py sha256=P0Cu-CcAbjRFt9ByXmPoopx7LSD3wyf0RViUiXCXx7E 2672
immuneML/reports/Report.py sha256=yxmdEt3gK8pvkpPzeHX0cxwW1Y91T1eyFm6LjL7ge7Y 7823
immuneML/reports/ReportOutput.py sha256=1bGA33J9DlQXIx_oV8wEXkI_Gq_kvumsItJt9FHgxKU 201
immuneML/reports/ReportResult.py sha256=GsNZk9U0Fj-WFeBc_iaEptaDDpNbB6B9j--IuWOicgc 511
immuneML/reports/ReportUtil.py sha256=BhAmjviVIL4ZCjm7MRlzh3HwTSs1LAXsKrqt7p9e8mU 3367
immuneML/reports/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/reports/clustering_reports/ClusteringReport.py sha256=IjiotGLPCIhZpyeKCKhHVWNu5pf7N3ngZA-bIldv1o0 290
immuneML/reports/clustering_reports/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/reports/data_reports/AminoAcidFrequencyDistribution.py sha256=pXQHfnP_n5LpXILeu6rnAOYz7bm5y5yNK_VNQZiPQRY 18387
immuneML/reports/data_reports/DataReport.py sha256=vz-lbLFz6714s9xjWPud670Lq9JUj3FfdWQfvayrPmc 2424
immuneML/reports/data_reports/GLIPH2Exporter.py sha256=bT6N4vABQ964brFcw7AgfPkUvVUYJUmrREL0ejYLW5U 3448
immuneML/reports/data_reports/MotifGeneralizationAnalysis.py sha256=xeZV3MVLiOCcIHOOQEMpYxkn_OFjyOtkgKsUSLTluyQ 26752
immuneML/reports/data_reports/ReceptorDatasetOverview.py sha256=zD_fqQp-sAj9yu8PV0TOJM0C6UfXKICpwpMrBf1NiC8 4263
immuneML/reports/data_reports/RecoveredSignificantFeatures.py sha256=vVcyUcYlWgiHDCTNIjabSQZgtNOUT9Xo-7yvznugnWg 13071
immuneML/reports/data_reports/RepertoireClonotypeSummary.py sha256=HGfESxUtDiLbDa1zegf_uJlAP0_E7P9bocNTVV5ftT0 4261
immuneML/reports/data_reports/SequenceCountDistribution.py sha256=ha6uk255h-qJLXg0Q138lEMtcqRaeFj-fK0yyNq0kP4 5922
immuneML/reports/data_reports/SequenceLengthDistribution.py sha256=1m5ZNkNBQLWQR5R6D5mXiDZEGmsV4puKxEB8NEKGUbE 6566
immuneML/reports/data_reports/SequencesWithSignificantKmers.py sha256=AmIkCHaWvYo2qHuxUDLXKn7S1o2RrZVzizoj9XrT7Uo 6981
immuneML/reports/data_reports/SignificantFeatures.py sha256=xpEnztTc9mGm3EKKMNkVcBVTwwRMFjgTwcYU162U2Zg 13697
immuneML/reports/data_reports/SignificantKmerPositions.py sha256=7UKrzTwnk0Sw-bUrexYwELrhdu3X_ytwoB77bRB8KWw 9903
immuneML/reports/data_reports/SimpleDatasetOverview.py sha256=dgzyowITkhjkBWeiYg-xKB8KJ4gFvwO-EJDPL-txtJs 4240
immuneML/reports/data_reports/VJGeneDistribution.py sha256=vzeMets5PL9AlT9yzIL83gheBJldOboZcbeOu0c8tS8 19043
immuneML/reports/data_reports/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/reports/encoding_reports/DesignMatrixExporter.py sha256=-s0vb_jhsIv6IeTEDV4Z50gzqIDzKcmw0vBcQSnvxlA 5706
immuneML/reports/encoding_reports/DimensionalityReduction.py sha256=Sv4CFYTJyQiJoo9Asyk79dxTwzs1gy04ksWfeOCwc7o 3390
immuneML/reports/encoding_reports/EncodingReport.py sha256=rDAZzhROdT6kV53yMJAgkPZz6xUvJNOoGaky6nBPD8I 2450
immuneML/reports/encoding_reports/FeatureComparison.py sha256=U1bSo5juLutRzZvEVQRLIqHeJzj6destU9MNpS3-hx8 12266
immuneML/reports/encoding_reports/FeatureDistribution.py sha256=kuwc6lkPC0j5U_rO1qTFnpbsg7BuFaPmBHfhexqLRX0 6671
immuneML/reports/encoding_reports/FeatureReport.py sha256=giroXHWAHpkO8guZPfYXqQbNE8XPK-HBti7G0j5OjYI 3522
immuneML/reports/encoding_reports/FeatureValueBarplot.py sha256=9Q-GHrgblgpzCHsBz8iLX9McYHm2D9lczuf2misMxsc 6823
immuneML/reports/encoding_reports/GroundTruthMotifOverlap.py sha256=7JbengyrgcVPwxUWi6BTvDsvAI_fhu6nWlSWkgP4f7E 8659
immuneML/reports/encoding_reports/Matches.py sha256=VQXZ7jMmR4RkbWIbgH416jb7Na0pDpby8Czr5k6qTbY 12372
immuneML/reports/encoding_reports/MotifTestSetPerformance.py sha256=MyTJRsC9scVx7N__-piUz0FO4_7ga4lbMd9SpDDCxPA 19984
immuneML/reports/encoding_reports/NonMotifSequenceSimilarity.py sha256=-QA6TENrD4to5ceXNDQ_8TMjr7ae7i19QHy6sCxFyc8 8021
immuneML/reports/encoding_reports/PositionalMotifFrequencies.py sha256=7mMVi89wx8Zb7w4oCquexjpR0Pklswb0HUksaxoqoUg 12138
immuneML/reports/encoding_reports/RelevantSequenceExporter.py sha256=5WzTtb8XjZ3iz-x5zhI8vAXhtaEGolgP4momtcQOn9U 3231
immuneML/reports/encoding_reports/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/reports/gen_model_reports/GenModelReport.py sha256=qC9JWwTm-DdWtId7Or9xEHX5iKe6rKTtePgCggos4TU 683
immuneML/reports/gen_model_reports/PWMSummary.py sha256=xpJ3znVJamq6uOfcXWDE1Ec56PxlUymffUcce75hVeQ 4328
immuneML/reports/gen_model_reports/VAESummary.py sha256=yuppHFJ4l_gSOtQzRLTXoXNCz5XxJzCzxI8FB3z3pjY 8913
immuneML/reports/gen_model_reports/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/reports/ml_reports/BinaryFeaturePrecisionRecall.py sha256=-DI5DWVGweacud1cSSe6PL-rH0ePwrL3fWN6udSJRak 7423
immuneML/reports/ml_reports/CoefficientPlottingSetting.py sha256=g7Hw5k0MhhBQgzs8aq2Lq4EZInY3nn-h1F6gAJFRKPI 154
immuneML/reports/ml_reports/CoefficientPlottingSettingList.py sha256=JP6xIikdynDsbqSXxOFwCyFpk7CPS47xGUQh90vfn6Q 825
immuneML/reports/ml_reports/Coefficients.py sha256=I9EKXu2KhdpiBUIW47I5iA4MSnQJHFYK6aW2rqpyRmU 10591
immuneML/reports/ml_reports/ConfounderAnalysis.py sha256=VoAHadfWb320y6_E8Z0g3Blx1OSPH2555tCAWmWm6mA 6122
immuneML/reports/ml_reports/DeepRCMotifDiscovery.py sha256=qlv-urwY9xwpcTlnMzlvPDz3wJLY_iAPi6QEG-W-y_Y 16060
immuneML/reports/ml_reports/KernelSequenceLogo.py sha256=Y_bodzRqIML9rXWT4noOhbx3USUzbqBD1aoZOSedOjI 6254
immuneML/reports/ml_reports/MLReport.py sha256=bGx13wQJbAWpn19BWENrJJTSyhFe-y5btN6HRITFJKc 2844
immuneML/reports/ml_reports/MotifSeedRecovery.py sha256=X7lD1dYfgSu7phooXt_NYTQjJ6Ada_Mdcw2P73P8S8M 14789
immuneML/reports/ml_reports/ROCCurve.py sha256=nI2If25Buczz9OXnm1GV55mSRKLSrUnjqHs8X4U2KE8 3710
immuneML/reports/ml_reports/SequenceAssociationLikelihood.py sha256=gp2PyZIg7llYzkpyuIhESsmC5qEfMi71I3fMmMll0iM 4465
immuneML/reports/ml_reports/TCRdistMotifDiscovery.py sha256=tEW4hD5O4zQhE6jzVDbaRmAj55xmoa6EoNjtE_j5aTc 9676
immuneML/reports/ml_reports/TrainingPerformance.py sha256=OYQB8HrzaJBRA67HTxQDd8_aT6rOO4bKrga6JOmXlEs 7587
immuneML/reports/ml_reports/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/reports/multi_dataset_reports/DiseaseAssociatedSequenceOverlap.py sha256=Bdvgh1UxP7WUA8HDLosTWeHZeHGz73RLVa6NQe2ys4M 4455
immuneML/reports/multi_dataset_reports/MultiDatasetReport.py sha256=_AuG8Yp7KlDzonNbwttEvE-v-e11ND5-DUB9DpDWTlc 2061
immuneML/reports/multi_dataset_reports/PerformanceOverview.py sha256=viHcNJHgNlcIbdqhokBZqjN5lHiJGCondEbyCx9RWhw 7553
immuneML/reports/multi_dataset_reports/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/reports/train_gen_model_reports/KLKmerComparison.py sha256=JfI0u5cPJ7pVEKJChNwQvYONjWukTJZqizSomPGVjmw 7910
immuneML/reports/train_gen_model_reports/TrainGenModelReport.py sha256=cQaJoxdFqKfXqsnTpxFrMY1FomxwMQ2HEqx_tbNo2TQ 2388
immuneML/reports/train_gen_model_reports/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/reports/train_ml_model_reports/CVFeaturePerformance.py sha256=7C0sk_1s0r9JduPPHxr8amSALboGAZ83c8rW7AtCS5E 7986
immuneML/reports/train_ml_model_reports/DiseaseAssociatedSequenceCVOverlap.py sha256=Jk_Fpu_XsvKMvR8ptNY5KL2F2KwVvtK7CNqBGYs-2FQ 7460
immuneML/reports/train_ml_model_reports/MLSettingsPerformance.py sha256=NnoiByBdtcx0dWsO6U7eS5jU2-ayTh3LUlk5UxyYKk8 8008
immuneML/reports/train_ml_model_reports/ROCCurveSummary.py sha256=0AfetZjGsWniQpTnz64FwCqHgvOj1WIEjE-MmYae6LM 4921
immuneML/reports/train_ml_model_reports/ReferenceSequenceOverlap.py sha256=C3dOxCYKGrqicAqTv0nsNgdS6Wi0PVnJ7QUs8sCrgMY 10393
immuneML/reports/train_ml_model_reports/TrainMLModelReport.py sha256=Geqz3kv7JwPk6tCrc1RujI1Aw1owY0JdVz7liSu0UYk 1884
immuneML/reports/train_ml_model_reports/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/simulation/LigoSimState.py sha256=wdeXdP_QBQmbzMGHt9OUN5i0dU_0OffE5GRn-Zu2dAs 599
immuneML/simulation/SimConfig.py sha256=KVNnawOrEbIJa2jIFSR4A3B1DTLtT3bTiLW_OB1l8tA 5127
immuneML/simulation/SimConfigItem.py sha256=VVMLH6brmUN0QuxDxf4psz_Q7HVSpZcvpqyzuU2QpFg 5137
immuneML/simulation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/simulation/dataset_generation/RandomDatasetGenerator.py sha256=5st5QzQV0JV8tQ4zDWj9ZCVNjUuTfQsBaPLJl8JjpaA 14549
immuneML/simulation/dataset_generation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/simulation/implants/ImplantAnnotation.py sha256=KtPsLboYuZRgKFJjow7un5-RlPYfWGAeOxacH-u-9NQ 274
immuneML/simulation/implants/LigoPWM.py sha256=NM8djaJrK4hhI-mQtjd4_8Lcszlz9UeFKOTEBWVqSB8 2772
immuneML/simulation/implants/Motif.py sha256=yZ9cctgoxpXMaB5FxPnwNq6tANOVZApgDVY3OVGCm4o 883
immuneML/simulation/implants/MotifInstance.py sha256=mbyxOJ2kIZz0HbC4DK2xv5CMXrPgFbu7T6H2_UYQ_vE 734
immuneML/simulation/implants/SeedMotif.py sha256=ZcRWcGTXX-ISzPk3ePVF6yXe_jCj7nxK6YV4MiJ8Wyk 10207
immuneML/simulation/implants/Signal.py sha256=zAiKlPEvt87v8J9vj8vD_4YVVwZ0CukcuBGIpN_tETY 6067
immuneML/simulation/implants/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/simulation/simulation_strategy/ImplantingStrategy.py sha256=GZz5IhXfDJfb3mGETWJnpATPc5sMbahW_fU5TuibR_A 11870
immuneML/simulation/simulation_strategy/RejectionSamplingStrategy.py sha256=No_WS3Mf59MJ1qJ4JWnOyGNCfGrCrDQEVuA3MueEZvc 1472
immuneML/simulation/simulation_strategy/SimulationStrategy.py sha256=O8zSeBIOqubYOfIDRKm0LI4AeVY69zguEqj31A02h30 617
immuneML/simulation/simulation_strategy/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/simulation/util/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/simulation/util/bnp_util.py sha256=ZZCOgoaEeMesv59i_RKWqKLPxLNyFvq2FPD4AXKdz3E 1002
immuneML/simulation/util/igor_helper.py sha256=D4JXd3EiFE09C5Pm9DqeSa5G0NoAOydHgLW9hP43pyI 5363
immuneML/simulation/util/util.py sha256=0OxT9vcGg06VxTK7mOSxWRqqOSIHkkNWT8APz52jqy4 25098
immuneML/util/AdaptiveImportHelper.py sha256=9Zmaj38uydIupyNbSAjm762S3hyq2sl_oWk9Hq3JxtU 5782
immuneML/util/CompAIRRHelper.py sha256=QYyoa7XhPe9BCA1ondTFAnv2AXC2j-lGwegbPylKKhI 8484
immuneML/util/CompAIRRParams.py sha256=f_hpaKQitaXjYF9DPrdi5HnfVUKVqF6jQAMJg7T95_0 447
immuneML/util/DistanceMetrics.py sha256=5dRG5gwPmoL7BwCvveSTE-GVp7B0D_immUPD2oHsBh0 448
immuneML/util/DocEnumHelper.py sha256=Gp0QjFYfpR3w2CWJBL6eOY-0CyADgAP3KGsLWPDtqu0 405
immuneML/util/EncoderHelper.py sha256=eyEHBW6jDES88OP5TMRcNKo4DIjl52WY3rllHk4qiaU 6899
immuneML/util/ExporterHelper.py sha256=j6-hJI3DMhvLBCD0XEQkoAKfaSZyWYiT-ddIE5-lqhc 762
immuneML/util/FilenameHandler.py sha256=WALHIl7pseOZaQ4GBBGvsUraDOGyB4nl2nsdd2kbV5U 1143
immuneML/util/ImportHelper.py sha256=gJ1I4zyMT07Qt_ZztYDWoD6NAs-993P_4hoFpTH1vA4 14094
immuneML/util/KmerHelper.py sha256=emA9q71yEVHbG2-EBLUW6Wj2lqkGzOq7lI8wjPQhdsk 5605
immuneML/util/Logger.py sha256=RBpyui--aPaHLUEr048QD2VG0y7sCQYevkVzJ7qvPWc 1231
immuneML/util/MotifPerformancePlotHelper.py sha256=FimVWJBSnirGZw3qRcFdCS216mVnmlY4so6AKAm5Vac 16045
immuneML/util/NameBuilder.py sha256=kbEwOgmIOCnOxjx2n_R5CgSNr8Z8dsv9a5fI_YRNpHs 1043
immuneML/util/NumpyHelper.py sha256=kU-6VbmY7FSPbwv9kjTbsfEM9opjGyyTNW8hAgJcrIU 1601
immuneML/util/ParameterValidator.py sha256=Lrh7OjRSqkxquo74ox2o1sJBzlQZm4ZkvK-ezX2wiD8 5925
immuneML/util/PathBuilder.py sha256=FqvSCyqACXWJuYzBc9ZLGrXSDYIJY3-5rPuslGe6_2k 761
immuneML/util/PositionHelper.py sha256=KvnNHYWI4xBV5eBzpotG1FG8V4d0CGnInscLXB9GAUg 6529
immuneML/util/ReadsType.py sha256=zk0EBZCCEYdMwIi1wnXgPmuQDRpLPeW0Vpwf5DJJ6K4 85
immuneML/util/ReflectionHandler.py sha256=gf-4LzS5J5J_qAwEVr7yLlvB_fL_u2AI2UEF9wIYwHk 4406
immuneML/util/RepertoireBuilder.py sha256=1uv4EJLYrgc7lkV5KEdPBcNTeTOS2JMhyfTVkc55tmU 5330
immuneML/util/SequenceAnalysisHelper.py sha256=usOikxWEaqXgewwIJNh2f9YHKmnQ1-b6QMGleIM79aI 1927
immuneML/util/SignificantFeaturesHelper.py sha256=Rs80aahSVuVI7gacEcP3QaIOV_C5gFpmUOfQP1c0H24 6696
immuneML/util/StringHelper.py sha256=gShI4lVK9oFbBjQyFl0AgmJgpbgCpbnUsRA6sgfa8w0 759
immuneML/util/TCRdistHelper.py sha256=tNZr9iTtbo3CMhPFmzGA5ztynSinzRjkzHJdfIj73OA 5205
immuneML/util/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/instructions/GenModelInstruction.py sha256=VE39EjDdBH96999d8q7sshxrxZ-sYdj1dn4tw5w3-Vo 3293
immuneML/workflows/instructions/Instruction.py sha256=EsgwxM6o9VLgUGUHe1i0DRySwlvqD-ioCVUvEncVFdw 156
immuneML/workflows/instructions/MLProcess.py sha256=9H00YS8P2izd5IcKQcuaBDLSHjL5It25DhYjMN9DVN8 10839
immuneML/workflows/instructions/TrainMLModelInstruction.py sha256=CKQP2QT6K16JxwLTGqxZGNtYgBLrA0426tmB5Fhb4es 19853
immuneML/workflows/instructions/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/instructions/quickstart.py sha256=-AjL8VJrdMkyvWPWZ4LTgEyBvtvHwNrEd1HA8WF4BPI 7712
immuneML/workflows/instructions/apply_gen_model/ApplyGenModelInstruction.py sha256=QHBb7LrVtGOTpG3_7Z89snZ7wm5sBj6De8f88UgMyfM 2205
immuneML/workflows/instructions/apply_gen_model/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/instructions/clustering/ClusteringInstruction.py sha256=Yk8LSsBrCBJqnYl0BJICGB_iI0x-rvn2C6TEvMJpXb8 15768
immuneML/workflows/instructions/clustering/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/instructions/clustering/clustering_run_model.py sha256=6v6mQTRRFYqevaxj9r9fB9Nljxaeo1R3gKrSY6t3bWQ 1713
immuneML/workflows/instructions/dataset_generation/DatasetExportInstruction.py sha256=YtH3i67o0CoPtuhqjwoCw9-UOc0yhR7sS_5SNv5fnDM 5144
immuneML/workflows/instructions/dataset_generation/DatasetExportState.py sha256=YRWfAIrFUgH9DICW_6F9MtmVTVGTGsqDBsGZoGKkBQc 391
immuneML/workflows/instructions/dataset_generation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/instructions/exploratory_analysis/ExploratoryAnalysisInstruction.py sha256=wKnUAZl2S5aJsxd2WAoF_48hyiCq0YamvviE9OLTypQ 9134
immuneML/workflows/instructions/exploratory_analysis/ExploratoryAnalysisState.py sha256=TbVmd9XqsiPgPx3r8-i3yNwpTynvEf8hyfGWLGWLCZU 191
immuneML/workflows/instructions/exploratory_analysis/ExploratoryAnalysisUnit.py sha256=zvRrrhFbxQf0yJOcOkT9_beWj_vuMKsx-KaSvXYpWGM 852
immuneML/workflows/instructions/exploratory_analysis/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/instructions/ligo_sim_feasibility/FeasibilitySummaryInstruction.py sha256=JVUbuDDe6P3YiLQmBaMt968F2Hh2vlRQ-hwwtT_5cPM 13733
immuneML/workflows/instructions/ligo_sim_feasibility/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/instructions/ligo_sim_feasibility/feasibility_reports.py sha256=y1ZcATKFme1pw2_f_udXrbV0OtieJ7cyxsia8WkTj6Q 7478
immuneML/workflows/instructions/ligo_simulation/LigoSimInstruction.py sha256=O4jXPfWLXPWHDD1k7IA_4NJRcIEbPiv9qpk1ezlQlH0 25507
immuneML/workflows/instructions/ligo_simulation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/instructions/ligo_simulation/runtime_reports.py sha256=DBuaJ5d3xZGRKgHMsm91i-6xtr2el2FswRYv_Dz01y0 794
immuneML/workflows/instructions/ml_model_application/MLApplicationInstruction.py sha256=BM1YSD4M8we1Pc2EIERpHwj4-4wPsVOE2mtx6buMzko 8506
immuneML/workflows/instructions/ml_model_application/MLApplicationState.py sha256=wikMz55p04dqe6Lj0EttkcEnln03uU6ApqiBMip90Ak 525
immuneML/workflows/instructions/ml_model_application/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/instructions/subsampling/SubsamplingInstruction.py sha256=D4jWFXLDWicwapBByLMMMBG5-7Td8hxn-CDXs8fcg4c 4409
immuneML/workflows/instructions/subsampling/SubsamplingState.py sha256=Mv0yXwIHAdN7HXEJL1JbqMHCby-Y2T5_uq8oGl8SQbg 598
immuneML/workflows/instructions/subsampling/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/instructions/train_gen_model/TrainGenModelInstruction.py sha256=148BjsETNP0n13yQuwSsb1bsD1G5XLEtBKFagn68iQs 11451
immuneML/workflows/instructions/train_gen_model/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/steps/DataEncoder.py sha256=pEQOEHFwiOwfuMyQ-ukISuuW_14I4uZ2DM7O41Rn7pg 1261
immuneML/workflows/steps/DataEncoderParams.py sha256=YgdRTZntdwvBBSHBjuL_RbihXf6M4iXi8GbEA78lqpU 405
immuneML/workflows/steps/DataWeighter.py sha256=ysJZqmlLODVrr_L4ItLVqKkzCQP8DnU3JeQICBwhNrw 1012
immuneML/workflows/steps/DataWeighterParams.py sha256=CiQLz2Rxp0VFSQBaUNbdHJKt-4JOHqUvGbz-AKH6Pa4 492
immuneML/workflows/steps/MLMethodAssessment.py sha256=Dn-_RC0lX7r3FbWR4UIrJ0nx55U8Ayz8b0dyCubmlak 4961
immuneML/workflows/steps/MLMethodAssessmentParams.py sha256=PjLX-MDTGZdA8K0xS9KXJJACEfM2ZojUxl39XMtDNiM 922
immuneML/workflows/steps/MLMethodTrainer.py sha256=_v1KsjnOOZ6QP4tvy7Sze4ntE-cKpk1ZCP4PVMhR-e4 2692
immuneML/workflows/steps/MLMethodTrainerParams.py sha256=zmZondJWEhm2tPtsm6dvoW5-mylZv-HTi7EbOTI9GAU 962
immuneML/workflows/steps/Step.py sha256=tGPbVAHk4tCUYlEzRSLVpygFafL-dCMKVnCuzhXy2iE 677
immuneML/workflows/steps/StepParams.py sha256=anFsXja6TP2dckWDYv0ZVUu-aIXsUvsGn5zH12GAM98 63
immuneML/workflows/steps/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
immuneML/workflows/steps/data_splitter/DataSplitter.py sha256=xQ8BlMNFwu6xQegV3dsB0aJFMycl-2QmTCLpuvhIcMk 4662
immuneML/workflows/steps/data_splitter/DataSplitterParams.py sha256=77w8zMbwm6zn4k46Ch1xKeOYYPbUBqZYM0uVne0xLi4 642
immuneML/workflows/steps/data_splitter/LeaveOneOutSplitter.py sha256=c0SB6F_SPtRiY-2sAJ6NBRrLVI5rforxEgbEVc9fq9Q 4158
immuneML/workflows/steps/data_splitter/ManualSplitter.py sha256=LhZlUXLYsEl5KGnsoT4tJh-V-5n4sBY-OMi4Bd2Xa0w 3833
immuneML/workflows/steps/data_splitter/Util.py sha256=sU2GLmQKMuVGfdCH-w08AV-WGw4Ch8kiUu_UwBeljIE 699
immuneML/workflows/steps/data_splitter/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scripts/DocumentatonFormat.py sha256=PyPOcot6NQH6FqOg3Z7j34jKIxhwqf5S6CrdNm9q4uQ 326
scripts/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scripts/check_new_encoder.py sha256=z7ftMSCt1NQcDZvdnMpVFL0ge_KHhFOF-vQMhZoe0zk 17716
scripts/check_new_ml_method.py sha256=tz2SLWADhN2YgCh1bxsScuhamCKD3x11F_tliKQY1rI 17966
scripts/checker_util.py sha256=3xMSPykRCPixgOuYidRi2ONgOy44iuWvptDuq4TurOo 3779
scripts/specification_util.py sha256=gYIxxgKw8VBB9hcWqHa8aH8rn3dzyxUvo2KM81JgfiI 1303
scripts/specs_docs_generation.py sha256=n8-rz6Xg15OrDs7iIkTsK9Qy5TYdpZC8UQmsVjlsuJY 878
immuneML-3.0.2.dist-info/LICENSE.md sha256=hIahDEOTzuHCU5J2nd07LWwkLW7Hko4UFO__ffsvB-8 34523
immuneML-3.0.2.dist-info/METADATA sha256=t8UYt9qnCGegOP7lL4GidVZLyAKPw5YAmd9ibbIt5m0 9628
immuneML-3.0.2.dist-info/WHEEL sha256=R06PA3UVYHThwHvxuRWMqaGcr-PuniXahwjmQRFMEkY 91
immuneML-3.0.2.dist-info/entry_points.txt sha256=iB6H7sL5hAwxXbf_R50EyCBMLazNFzKI72KB1pU9A1g 164
immuneML-3.0.2.dist-info/top_level.txt sha256=mVksbG_ET4SuWWm-pHt-Y6PYFPaCL4jBKtKik9EU6bA 17
immuneML-3.0.2.dist-info/RECORD

top_level.txt

immuneML
scripts

entry_points.txt

immune-ml = immuneML.app.ImmuneMLApp:main
immune-ml-quickstart = immuneML.workflows.instructions.quickstart:main
ligo = immuneML.app.LigoApp:main