Reverse Dependencies of HTSeq

The following projects have a declared dependency on HTSeq:

• aimhii — A pipeline for mapping insertion mutants from whole genome shotgun data
• circtools — circtools - a circular RNA toolbox
• daric — DARIC, a computational framework to find quantitatively differential compartments from Hi-C data
• fuma — Fusion Matcher
• htseq-clip — htseq-clip: a toolset for the analysis of eCLIP/iCLIP datasets
• HTSeqCountCluster — A cli for running multiple pbs/qsub jobs with HTSeq's htseq-count script on a cluster.
• imfusion — Tool for identifying transposon insertions in Insertional Mutagenesis screens from gene-transposon fusions using single- and paired-end RNA-sequencing data.
• inferelator-prior — Inferelator-Prior Network Generation Tool
• pyreference — Library for working with reference genomes and gene GTF/GFFs
• RiboCode — A package for identifying the translated ORFs using ribosome-profiling data
• RiboMiner — A python toolset for mining multi-dimensional features of the translatome with ribosome profiling data
• ribotools — Ribo-seq analysis tools associated with the Rp-Bp package and more
• scAllele — A versatile tool for the detection and analysis of nucleotide variants in scRNA-seq
• telescope-ngs — Single locus resolution of Transposable ELEment expression using next-generation sequencing.
• utrcalling — Package with tools to calculate molecule UTR sizes from RNA sequencing reads.
• zgtf — gtf conversion utility.