hicberg

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1.0.0 hicberg-1.0.0-py3-none-any.whl

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Project: hicberg
Version: 1.0.0
Filename: hicberg-1.0.0-py3-none-any.whl
Download: [link]
Size: 417462
MD5: 67ce386ec17b2900a9b6a2539955e738
SHA256: 1597c5b5926013d3044b35617c55040caf21201b414def0e668cb333574d45c3
Uploaded: 2024-12-31 10:11:36 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: hicberg
Version: 1.0.0
Summary: Standalone command line tool to visualize coverage from a BAM file
Author: sgradit
Author-Email: sebastien.gradit[at]pasteur.fr
Home-Page: https://github.com/sebgra/hicberg
License: MIT
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.11
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Visualization
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX
Classifier: Operating System :: Unix
Classifier: Operating System :: MacOS
Requires-Python: >=3.11
Requires-Dist: bioframe
Requires-Dist: biopython
Requires-Dist: click
Requires-Dist: cooler
Requires-Dist: funcy
Requires-Dist: hicstuff
Requires-Dist: matplotlib
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: pysam
Requires-Dist: scipy
Requires-Dist: scikit-learn
Requires-Dist: statsmodels
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 39829 characters]

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hicberg
tests

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hicberg = hicberg.__main__:cli