Reverse Dependencies of harmonypy

The following projects have a declared dependency on harmonypy:

• cellanova — Cell state space analysis of variance for signal recovery with batch correction
• cytopy — Data centric algorithm agnostic cytometry analysis framework
• metatime — Beta MetaTiME: annotate TME scRNA cell states
• oggmap — extract orthologous maps (short: orthomap) from OrthoFinder output for query species
• orthomap — extract orthomap from OrthoFinder output for query species
• panpipes — Panpipes - multimodal single cell pipelines
• pyLemur — A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
• ReadyCellOne — Computational tools to enable task-centric cell engineering
• SANTO — SANTO: a coarse-to-fine stitching and alignment method for spatial omics
• scab — Single cell analysis of B cells
• scanpy — Single-Cell Analysis in Python.
• scanpy-scripts — Scripts for using scanpy from the command line
• scATAnno — no summary
• scdataloader — a dataloader for single cell data in lamindb
• sceleto — Tool to aid in single cell analysis (temporary description)
• scib-metrics — Accelerated and Python-only scIB metrics
• scLift — scevow: Excellent optimization of variant function mapping through weighted random walks at single-cell resolution
• scslat — A graph deep learning based tool to align single cell spatial omics data
• sctk — single cell analysis tool kit based on scanpy
• smashpy — SMaSH: A scalable, general marker gene identification framework for single-cell RNA sequencing and Spatial Transcriptomics
• symphonypy — Porting of Symphony R package to Python