gilda-slim

View on PyPIReverse Dependencies (2)

1.4.0 gilda_slim-1.4.0-py3-none-any.whl

Wheel Details

Project: gilda-slim
Version: 1.4.0
Filename: gilda_slim-1.4.0-py3-none-any.whl
Download: [link]
Size: 720690
MD5: 1dc4fc988f0016107a46f71236dc436f
SHA256: 4182bf07a2c0531198054d6eb8dd2ba644dc4619dad0b9f98a95349a36fb9b14
Uploaded: 2025-02-08 19:49:37 +0000

dist-info

METADATA

Metadata-Version: 2.2
Name: gilda-slim
Version: 1.4.0
Summary: Grounding for biomedical entities with contextual disambiguation
Author: Benjamin M. Gyori, Harvard Medical School
Author-Email: benjamin_gyori[at]hms.harvard.edu
Home-Page: https://github.com/indralab/gilda
Keywords: nlp,biology
Classifier: Development Status :: 4 - Beta
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Requires-Dist: regex
Requires-Dist: importlib_metadata; python_version < "3.8"
Requires-Dist: unidecode
Requires-Dist: pytest; extra == "test"
Requires-Dist: pytest-cov; extra == "test"
Requires-Dist: pandas; extra == "test"
Requires-Dist: indra; extra == "terms"
Requires-Dist: obonet; extra == "terms"
Requires-Dist: pandas (>=1.0); extra == "benchmarks"
Requires-Dist: requests; extra == "benchmarks"
Requires-Dist: tabulate; extra == "benchmarks"
Requires-Dist: tqdm; extra == "benchmarks"
Requires-Dist: click; extra == "benchmarks"
Requires-Dist: boto3; extra == "resources"
Requires-Dist: pystow (>=0.1.10); extra == "resources"
Requires-Dist: flask (<4.0,>=3.0); extra == "web"
Requires-Dist: flask-restx (>=1.3.0); extra == "web"
Requires-Dist: werkzeug; extra == "web"
Requires-Dist: adeft; extra == "disambiguation"
Requires-Dist: scikit-learn (<1.5); extra == "disambiguation"
Requires-Dist: nltk; extra == "ner"
Requires-Dist: flask-wtf; extra == "ui"
Requires-Dist: flask-bootstrap; extra == "ui"
Requires-Dist: sphinx; extra == "docs"
Requires-Dist: sphinx_autodoc_typehints; extra == "docs"
Requires-Dist: sphinx_rtd_theme; extra == "docs"
Provides-Extra: test
Provides-Extra: terms
Provides-Extra: benchmarks
Provides-Extra: resources
Provides-Extra: web
Provides-Extra: disambiguation
Provides-Extra: ner
Provides-Extra: ui
Provides-Extra: docs
Description-Content-Type: text/markdown
Dynamic: author
Dynamic: author-email
Dynamic: classifier
Dynamic: description
Dynamic: description-content-type
Dynamic: home-page
Dynamic: keywords
Dynamic: provides-extra
Dynamic: requires-dist
Dynamic: summary
License-File: LICENSE
[Description omitted; length: 8122 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.8.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
gilda/__init__.py sha256=qoVrgZYJ8YN_8ps2CAYrGbZ3SAgD6og91V-4sdWnr3g 804
gilda/api.py sha256=kaRpzmgRQrDec0kbg9wo4TbXRWx1XLzXDq7mYyz76iM 9078
gilda/generate_terms.py sha256=mcqh1yxSTdp5GNn3G3uBGbrgex8V60HXE-HeT0yHF5M 28765
gilda/greek_alphabet.py sha256=htjC_jNEWSBSStd2FcfbFtSOah0UGEZaEOG9pGSt6j8 1584
gilda/grounder.py sha256=3FXDOMxBUBbbEJHsX9MxAfLwWO_PKuo9Jm-R5bh9kgk 30920
gilda/ner.py sha256=Aq0o2Ap4XkPB_VAoAeOiEfBwLD1SGm1qkSbDVsBLd_0 8448
gilda/pandas_utils.py sha256=oetlsADF6LWirQ9ePCOIZBgFFMUX-dFn4Z79v3YLmrY 3170
gilda/process.py sha256=b8oLc-UClyZEuXj9pdyjJKfBSsqewxhpOYUsrYIWXTo 7755
gilda/scorer.py sha256=YrE8BrfUSPDn9NySkzJoWdp78LNJKN5TXfuXUZZFtWE 8205
gilda/term.py sha256=S23nCIPZIKuhpgedVrGpsdt_wthjLzR7WjsmHvIUsS0 6953
gilda/app/__init__.py sha256=vp9dO1-WOCDDjMNYqtMRmxdtnI60wtf8NJwbSkVFpMw 455
gilda/app/__main__.py sha256=qAT-qKJVDgc0pJPEHYXmBqDdYynaSx5mJKK86_9f1ME 600
gilda/app/app.py sha256=7ULlPCHLxhlqnrqdvolPMCkKmfUKoNfakRRnokM3rJs 14847
gilda/app/proxies.py sha256=qpt1sgD6UqMXHGlIM4MKu2bAsY7NEFLqvB9GI2bwhZA 378
gilda/app/ui.py sha256=HvyLJuUTP3ZZd1mQzkheHk13RKaKTiPCZ21fknDOhuQ 3714
gilda/app/templates/base.html sha256=RBmAsDmaohC8EOygGyBWgM6Amk2al1tQih4O1R3Cc-0 7592
gilda/app/templates/home.html sha256=MBALhoPjoRO8jnEy4oxIZRkdHVpvUTiZ_0jcZzCz9F4 92
gilda/app/templates/matches.html sha256=3dEqrCCyl4N4WL73jyOyEjypUmVYFpBxt0olyImaF1Y 2235
gilda/app/templates/ner_home.html sha256=NiSU3cQXaxDJ1U497WkNRJDrWlpv-R9CmSO45Dn1Bzc 96
gilda/app/templates/ner_matches.html sha256=Tx5h6UhzHWKC-Ato93beqtKQNVqYm-hn3I9NXA-aXJw 2034
gilda/resources/__init__.py sha256=YjpSu7FvxM89PgQcg-JbHm8OJ0yVtfpcl6qLDm8yEO0 2846
gilda/resources/__main__.py sha256=hZ0pDZyeJXk_TV9RAsaHYrRD9N1KaqHeE4DglgfHeXA 130
gilda/resources/mesh_ambig_mappings.tsv sha256=ST7rEJz5fzOa6ohhCWbFVS2kvbYPr2Om-XFI7Qbrr9Q 119892
gilda/resources/mesh_mappings.tsv sha256=6ae9ON9MXuRWPA7mdemrIFv0Q4RpTCIHJb_A0Imnj-k 2128476
gilda/resources/ner_stoplist.txt sha256=7HC0oUhmLZjk9sxRNYXE9gmxlnb02oDyVgLD0bi-WKI 1094
gilda/resources/sqlite_adapter.py sha256=KXejW8vvj28m3FkzaNIuY_f0aEhMsFgMyNhPwC0C3_A 3331
gilda/tests/__init__.py sha256=Z9rPyNUspV9FHVpe5YviOt8bTShVIoN2TGiNsVp0dvo 47
gilda/tests/test_api.py sha256=eyvLehs_m_J7pKXvShzuLOti8VlOtPaquoknfPAJmW0 2022
gilda/tests/test_app.py sha256=ZsLB0U_czfgxGTYzEUryJTF2mJpWHqQB6wBTX__jF2A 2972
gilda/tests/test_generate_terms.py sha256=Hrv1QNy6vwJoN8C8BMhxgFdPastX4hQjt9K0bcb0eTM 5846
gilda/tests/test_grounder.py sha256=YjoJ2XURBwQ-YmiwcXOr4xNZQE7MCXDGcEa6KFQwWlk 9552
gilda/tests/test_ner.py sha256=fRXL4Zlc3SYsEsM8h5oTJJhTIqzySGxhPrNrGGJ45ao 3419
gilda/tests/test_pandas_utils.py sha256=iVp8zMxPDuZWmBKo0pTzzV19MuR2p3wu1UtnFy_uy70 543
gilda/tests/test_process.py sha256=gssXnue7JmYWG0rPEVuvIFBVMRYdL8Enel9SellkQhY 1644
gilda/tests/test_scorer.py sha256=PENh1oZcZkOdgpbm0B-0fqv9zLDTddIn1KhrLpM28aU 1566
gilda/tests/test_term.py sha256=LBI-MtjR4txTYSYUwGaSWQRRd1RCTmVRyi0Xg2GfsZY 1238
gilda_slim-1.4.0.dist-info/LICENSE sha256=enBr3dOhLlKMeIS2kcyjMKbenqPracd0dWj4nFqJvwE 1346
gilda_slim-1.4.0.dist-info/METADATA sha256=YioXqi0tipGGFhM8Bcooi-EOEMCiGMeAtgNViCRe8tY 10282
gilda_slim-1.4.0.dist-info/WHEEL sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8 91
gilda_slim-1.4.0.dist-info/entry_points.txt sha256=hNcPaIBIe194hQmzQ0F-pY235U-mRnNtFnYKmJz10_c 41
gilda_slim-1.4.0.dist-info/top_level.txt sha256=zYMY7se8MIqyWzg9u9GA48IcP_3ViP1isgr_4wu398o 6
gilda_slim-1.4.0.dist-info/RECORD

top_level.txt

gilda

entry_points.txt

gilda = gilda.app:main