Wheelodex » Projects » genmod

genmod

View on PyPI — Reverse Dependencies (0)

3.9 genmod-3.9-py3-none-any.whl

Wheel Details

Project: genmod
Version: 3.9
Filename: genmod-3.9-py3-none-any.whl
Download: [link]
Size: 1511008
MD5: 20717ad1dd0cc0000f9a8e05441273f5
SHA256: 328c90f7109ca736d696a838d8f94c51b9f54f0fd9d496abedca3e3ecf11d4a8
Uploaded: 2024-10-24 08:31:10 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: genmod
Version: 3.9
Summary: Annotate genetic inheritance models in variant files
Author: Mans Magnusson
Author-Email: mans.magnusson[at]scilifelab.se
Home-Page: http://github.com/Clinical-Genomics/genmod
License: MIT License
Keywords: inheritance,vcf,variants
Classifier: Programming Language :: Python
Classifier: License :: OSI Approved :: MIT License
Classifier: Development Status :: 4 - Beta
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Unix
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: ~=3.8.0
Requires-Dist: ped-parser (>=1.6.6)
Requires-Dist: pytabix (>=0.1)
Requires-Dist: pytest (>=7.3.1)
Requires-Dist: interval-tree (>=0.3.4)
Requires-Dist: click (>=8.1.3)
Requires-Dist: configobj (>=5.0.8)
Requires-Dist: intervaltree (>=3.1.0)
Requires-Dist: extract-vcf (>=0.5)
Requires-Dist: vcftoolbox (>=1.5.1)
Requires-Dist: six (>=1.16.0)
[Description omitted; length: 90 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.44.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
genmod/__init__.py sha256=soVkAIaZExQWNDZTfHcwss2q3M-hEYqbLbO0-0k3nhA 468
genmod/log.py sha256=3taYJR7Abe9TBHCmqV3rp9iSQiVfNrSgPMZ-3ND9Wco 1749
genmod/annotate_models/__init__.py sha256=svJvg0xMwG50MINXhGBLIV2pbwX79bEPIQaT18ZJhRo 268
genmod/annotate_models/fix_variant.py sha256=7bPEcTNEEF21W1J2q8vkiVpZ4zy9VxRm2tURsv7w-uM 3508
genmod/annotate_models/genetic_models.py sha256=5aID5p2qV-c0kdd4WPDebiYKo3lNh5hV4uslAxm7H5Y 20102
genmod/annotate_models/make_haploblocks.py sha256=aEdewv7KAfx_IPTjbvsLYUd_tWMgwRhSox3ak-k9Yew 5520
genmod/annotate_models/model_score.py sha256=6fNLtMNiEe685XANjJjAYpIP5upO6WaVU1ZLze1sWlU 1240
genmod/annotate_models/variant_annotator.py sha256=Rpe-2JMUY9wEkrwhH5Efh8mfe6wU8-u9xmJY9KXOnXg 5842
genmod/annotate_models/models/__init__.py sha256=yF3wrwG3K3khgLJZbRhCagX-jhEqTvIliPBXnlubCs4 272
genmod/annotate_models/models/compound_model.py sha256=M-GTKJbprEFqlaqnUnSgmWBbgey7wLXuW7fQsBiaUrs 4961
genmod/annotate_models/models/dominant_model.py sha256=0mqMcc1HT6Uj9AbqGfLJuPmBjumZAIxzEitbcQ6Wfs8 2799
genmod/annotate_models/models/recessive_model.py sha256=9qU0FNJwBjvY5n-BnAJ6kAQIoXY3NTSStBRakEsQjWg 2287
genmod/annotate_models/models/x_models.py sha256=ceaw44aw8PTwwqq7bFzHAWU91-EGMQRxG63IL4ptLxo 5496
genmod/annotate_regions/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genmod/annotate_regions/get_features.py sha256=gYBSqK-RvAaj1czAQR07RFzj3EDBKmW3afIVU4aza08 949
genmod/annotate_regions/parse_annotations.py sha256=l9kQYsWX0fTZpDrc8kUKSrrU5GC1-X91uOgz0LW5ukE 3146
genmod/annotate_variants/__init__.py sha256=oB8N_-2yLVcToaj0JXORjFZOsfBXrilDsrPWdjFDYnE 167
genmod/annotate_variants/add_annotations.py sha256=ldzYueVlvH5Aw64uaB3l7_k969DRlaXNVjI9UQuQ4is 3112
genmod/annotate_variants/annotate.py sha256=f8FPqAQgyZ6h6a99Jai4IuCQan90PXnTykUtI0YOfFs 2975
genmod/annotate_variants/read_tabix_files.py sha256=YQUs-lT0tgsm9tJNuJa1CJwwSssBipNIBl2w-Dvv7lA 5060
genmod/annotations/__init__.py sha256=CuTuxDGN4oUMaN2qkZvWVMSkzZ85cYdSC2icASnW-cw 288
genmod/annotations/ensembl_genes_37.txt.gz sha256=m3bnNQ1ySe1C1LJsayYIMDYR95RyKCXg054LfT7fuik 671660
genmod/annotations/ensembl_genes_38.txt.gz sha256=VCIEe4CDvMo636bJIp-SRksrmkh98gP5NMg0WJbH3Nc 747918
genmod/commands/__init__.py sha256=VcmuNjfW9ERGsf1BBO5qa7gQhusfGDOMdFr6xylpYZE 376
genmod/commands/analyze.py sha256=290e0igpGDEY2il8Cxv5vmNhn9x5yAsZDA0E6CSMMfE 24459
genmod/commands/annotate_models.py sha256=Ie5_lc2JMBm7Sk7DhKmW0-jORWra02AszQK5KN_VydQ 13737
genmod/commands/annotate_variant.py sha256=CGXniTkdF8N-S7rBT5tzApQiHjtiubGwQUCQC2Jm8KQ 7316
genmod/commands/base.py sha256=zqCa--sHDzBGWZOj8ZsiJFP_ZBwRbNHXTC1Cq-UhGEs 2201
genmod/commands/filter_variants.py sha256=AIgZoFx6sc2E39KrBYnsd4voPiMfUQauwym_72g3eFw 4348
genmod/commands/genmod_sort.py sha256=nDHeGMZsY9WaA1KG1BCoblq4txf34cRe8V5bhgZGPkI 4191
genmod/commands/score_compounds.py sha256=hvv-aci45huEXc3_dHgM_SHvu7CY97Rwap9oVmx_7WA 6502
genmod/commands/score_variants.py sha256=Rz5534eQxmTHbKrOYfOsheXsV1hliRz_PwflZK9_lIY 8139
genmod/commands/summarize_variants.py sha256=MJjo8i5kuttA1wNaVDIZExftQVSBIsqkkTLcR3BzQ1o 12490
genmod/commands/utils.py sha256=HUDcqcPEO4w2S9qRdcT9ci--RMEgAaRMKMTk7OZj5_E 1427
genmod/configs/genmod_test.v1.5.ini sha256=_Q8rI5D5-F7Lbtkb5IJ5CZ7hVHZtto2vitaeL08-nt0 9080
genmod/configs/rank_model_cmms_v1.7.ini sha256=YazUTi5EUROOiUNfH82fSEIs958igEEPnV4QkhXerbI 9274
genmod/configs/rank_model_cmms_v1.9.ini sha256=VUvjii3dVnf3R4H872nckMv0BcnvIAtsXuXpYirfmLM 9276
genmod/errors/__init__.py sha256=EhHrC4fdJF_t26mKoydER0767e65QMUk0mtT7DmieFU 65
genmod/errors/warning.py sha256=f8DIsOlt_S9yK3dB3pdhoe5M_5frIqgczyP1XegBthA 478
genmod/score_variants/__init__.py sha256=zP_TYRrNE1EMnKqHCLlNZsiTh8rcyrjyM73StKP3bUw 359
genmod/score_variants/cap_rank_score_to_min_bound.py sha256=QEERNeZMfIFL9GfaODjaL8kvjv9OJ-wEwExuUyMn-0I 1121
genmod/score_variants/check_plugins.py sha256=o0Yxy0HB84LfZp1fbP2T1QT6UFZBpw4lJyliLtElfAA 1452
genmod/score_variants/compound_scorer.py sha256=6n_mGoToQtx0ZSS2ivT882oK4gV2qejFUR4eoPZ0sBs 15796
genmod/score_variants/config_parser.py sha256=d4uaHSe8W4jNEYbK18bAEHfHwGb48DOlqXUsK1iObF0 15213
genmod/score_variants/rank_score_variant_definitions.py sha256=l54tgN7nWJY73QJWCDV1W_1GHpMJCFmaN61SqMNiloo 424
genmod/score_variants/score_function.py sha256=UhUdnvZcBPLpOMoCOFetaUjdmck7At-DMSEgtMlmJ3s 9567
genmod/score_variants/score_variant.py sha256=UBniWPqHxi6IgN7q7RwiDv6ciV-5RJxUeyrNCi3ZxuI 6097
genmod/utils/__init__.py sha256=LkwBrtbHnJ2_YDvd4RSezV25LVRraOU8oyUNbBv4MSc 2451
genmod/utils/check_individuals.py sha256=y3n5um8TMwhPvsSq4G8_MRzgNbEEPejd-949JFkm2BE 548
genmod/utils/get_batches.py sha256=5oQLaVstf39MkijYM-12cqPReUtkD4yK547On2-3XdY 6786
genmod/utils/get_features.py sha256=EHebIXhysg82RkZyQVo5XnzLWFq5p_C34BWH-yGdmWc 2303
genmod/utils/get_priority.py sha256=nEXXzfkg9CzgnFvv4B_l9yIRktZ21MbuK7Qca0M4GmA 2808
genmod/utils/is_number.py sha256=TSP34pJtqtrxcGAbj0MkG83Ng9WZVUX_a7F0te4MdUE 489
genmod/utils/pair_generator.py sha256=Fkwac_zkJErIMF16q7Hu5gOe6zdIzZg-ZkRlmOkY964 1009
genmod/utils/variant_printer.py sha256=uovvf7CbaLorrQAWfOlTFpmIYDaIWboqTJvJiy_NGH8 3248
genmod/vcf_tools/__init__.py sha256=VUpNDGpAT4YXQ8ix1nDquAk7eRh6GUyxzjzUL4_FflI 708
genmod/vcf_tools/add_metadata.py sha256=FxmdPoLalyy9AzxDa1an3jdLPBHVBTPv1vcUmyix0CM 3699
genmod/vcf_tools/add_variant_information.py sha256=tRUzlgG0MgqrWgFFRwpRSwspaOJDFsn5poOHVqxdBjI 4213
genmod/vcf_tools/check_info_header.py sha256=mO1vU739nxh06rg1z2LvpGYItWvUinSh-_LlacvYjgw 577
genmod/vcf_tools/genotype.py sha256=WcOjK09ZhX9lGvqlcasHkW2GQVbJZGPGpQzdsvvGlmE 4279
genmod/vcf_tools/get_genotypes.py sha256=ELRKiXZTK7dB3EtWH9xkmW4Isrfv2t66s3lc-3XhDv8 877
genmod/vcf_tools/header_parser.py sha256=A4uP_hI8Zdom-T2TXt7duvmAwlceoeiguPUw0_v-3-o 13002
genmod/vcf_tools/parse_variant.py sha256=FdqVkC_74AUZC9AAuphtxWVp0c5AIwACBVDmIXxCeyM 2974
genmod/vcf_tools/print_headers.py sha256=KZM_dbW0rkOWF0tvG33GU38lF8Q3is8hNr-AqBs8p4k 841
genmod/vcf_tools/print_variants.py sha256=isbhukLEtGWc5cbQaYArIGNwo9gocBFWd-G-DMPXaqQ 3388
genmod/vcf_tools/sort_variants.py sha256=c5oMCYCXARMGjQLGJmgfbAjOr3gMS4M4JU1BM8vpZg8 1745
genmod-3.9.dist-info/LICENSE.txt sha256=urpFcJXw3elN9kV2fFutc-lXegjuu2lqP_GSy8_CAbs 1054
genmod-3.9.dist-info/METADATA sha256=Cp5GC2CFtJhVLxUWkRUDoBZNxHKJhN2zntKo0E6Xu2g 1069
genmod-3.9.dist-info/WHEEL sha256=eOLhNAGa2EW3wWl_TU484h7q1UNgy0JXjjoqKoxAAQc 92
genmod-3.9.dist-info/entry_points.txt sha256=S0BTFOhxBDiMLIVum2Z-5p0dV6k71JRaylwOK8WjUV4 53
genmod-3.9.dist-info/top_level.txt sha256=jzGkaHdFydP1f6FVsi26tSrbdLyGCaeMbllStVzvB8o 7
genmod-3.9.dist-info/RECORD — —

top_level.txt

genmod

entry_points.txt

[console_scripts]
genmod = genmod.commands.base:cli