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gene-normalizer

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0.4.1 gene_normalizer-0.4.1-py3-none-any.whl

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Project: gene-normalizer
Version: 0.4.1
Filename: gene_normalizer-0.4.1-py3-none-any.whl
Download: [link]
Size: 58286
MD5: ddc7445900d82273747d69619f3bf7f3
SHA256: c353f4549e9fd87f4e0aa47110b12a507c7af86cff8b24b1b574c8cbb57646f3
Uploaded: 2024-07-19 14:40:21 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: gene-normalizer
Version: 0.4.1
Summary: VICC normalization routines for genes
Author: Alex Wagner, Kori Kuzma, James Stevenson
Project-Url: Homepage, https://github.com/cancervariants/gene-normalization
Project-Url: Documentation, https://gene-normalizer.readthedocs.io/en/latest/
Project-Url: Changelog, https://github.com/cancervariants/gene-normalization/releases
Project-Url: Source, https://github.com/cancervariants/gene-normalization
Project-Url: Bug Tracker, https://github.com/cancervariants/gene-normalization/issues
License: MIT License Copyright (c) 2020-2024 VICC Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Classifier: Development Status :: 3 - Alpha
Classifier: Framework :: FastAPI
Classifier: Framework :: Pydantic
Classifier: Framework :: Pydantic :: 2
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Requires-Python: >=3.10
Requires-Dist: pydantic (==2.*)
Requires-Dist: fastapi
Requires-Dist: uvicorn
Requires-Dist: click
Requires-Dist: boto3
Requires-Dist: ga4gh.vrs (~=2.0.0a10)
Requires-Dist: pre-commit (>=3.7.1); extra == "dev"
Requires-Dist: ruff (==0.5.0); extra == "dev"
Requires-Dist: sphinx (==6.1.3); extra == "docs"
Requires-Dist: sphinx-autodoc-typehints (==1.22.0); extra == "docs"
Requires-Dist: sphinx-autobuild (==2021.3.14); extra == "docs"
Requires-Dist: sphinx-copybutton (==0.5.2); extra == "docs"
Requires-Dist: sphinxext-opengraph (==0.8.2); extra == "docs"
Requires-Dist: furo (==2023.3.27); extra == "docs"
Requires-Dist: gravis (==0.1.0); extra == "docs"
Requires-Dist: sphinx-github-changelog (==1.2.1); extra == "docs"
Requires-Dist: gffutils; extra == "etl"
Requires-Dist: biocommons.seqrepo; extra == "etl"
Requires-Dist: wags-tails (>=0.1.1); extra == "etl"
Requires-Dist: psycopg[binary]; extra == "pg"
Requires-Dist: pytest (>=6.0); extra == "test"
Requires-Dist: pytest-cov; extra == "test"
Requires-Dist: mock; extra == "test"
Requires-Dist: httpx; extra == "test"
Provides-Extra: dev
Provides-Extra: docs
Provides-Extra: etl
Provides-Extra: pg
Provides-Extra: test
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 3408 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (71.0.3)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
gene/__init__.py sha256=rIloaMwPogdTGzgRbSxpi-wBLrLGfmdkzAhhz5tpgiE 1271
gene/cli.py sha256=Y1HXpOs6mLEG-5jCtnUsr2DKX2cuaHFlni7pV6EzDvc 11279
gene/main.py sha256=GTIwb6G_bqsUoswMn8NTaTWoR4zX5QJLAaOV3KEYPAI 4987
gene/query.py sha256=pUtsgVJGTSN-1sgMCMEL5-59cCruwRw-Hstauvi2X-E 26634
gene/schemas.py sha256=B3HZQKykFpfcdLEq145gkB9NsMUQNUD1fYjMC55356U 23797
gene/database/__init__.py sha256=VLpkHDr9dP8S5wmJmrPKBGh4y3tuYMP-0fK-VyYJ0O8 233
gene/database/database.py sha256=tkslaJOmjdKmvgv3mstoPD0WSOLmIeQIigLbkNgbQyk 12512
gene/database/dynamodb.py sha256=mh5RCkiqSNUDCrzkwWguaTvZyJu8Sw3FWywUegF46gI 22314
gene/database/postgresql.py sha256=ZhByxLuTvKX2Yz3z6_frTnnMz18KVmVGE1zUZhSy0-0 32951
gene/database/postgresql/add_fkeys.sql sha256=adLK2ssuSvQ4UShNQGy4T-E9vekggQmmWZjIxOoYL_g 713
gene/database/postgresql/add_indexes.sql sha256=czELGut8KHBCOhRECywzrWhhy99g9o4ETSF3kQMTAhY 630
gene/database/postgresql/create_record_lookup_view.sql sha256=pVh_8wk7N4suGqP0hSeFPX9ZrvY8dfjRoZ33LsKDNwY 1269
gene/database/postgresql/create_tables.sql sha256=0NvArO-wlhKwzUToVb_quAVgG-sT6TxFn-AbeLNvZqM 2028
gene/database/postgresql/delete_normalized_concepts.sql sha256=yCBYxYqzf2fWfBKtg6xlKXA_TqL_IWE6IW6zrZNGifE 960
gene/database/postgresql/drop_fkeys.sql sha256=rFT8u_dW3A5DidX0pwsBJYihI3ftRe7Xnu4-RySDKqE 383
gene/database/postgresql/drop_indexes.sql sha256=1KaKKg8kw06H_zjY75d7KfaG_t3LAJ6MzX-tIBx2IBg 381
gene/etl/__init__.py sha256=eoR-WjuzvcYt0kYgkU8poa8j7o0EN4zMdWplsGg-LBw 382
gene/etl/base.py sha256=TiyhvpR17RhFIVIYCJsT8vSNtOiShnsO7tSBGDzmG_0 7958
gene/etl/ensembl.py sha256=2psj9vUTQ-xE0KHecVlWGMpY74tP6Mye3ZwjM5td9dA 7245
gene/etl/exceptions.py sha256=RL6Xt5TxeF_RqjxaV7OndxEiQZoyyjUQ7ywPL8aKic0 447
gene/etl/hgnc.py sha256=g0jRE3te4kTkDwkLtacIvqFSesiTlqMH8MglGOme95I 8880
gene/etl/merge.py sha256=r5vGh9f_XhzhMcfcb0kICqt2GQM1ruvGMn9KzfBRrFk 7746
gene/etl/ncbi.py sha256=jDgiwttDTAZoo1y9VmVulaC76e_4gB7bYFSUCqx9z2w 19165
gene_normalizer-0.4.1.dist-info/LICENSE sha256=2MWu1cvPxxBM08BbuOMIaMRWGJEYi9mSm87-uwinl-k 1066
gene_normalizer-0.4.1.dist-info/METADATA sha256=UCvKNU5F22TpJbJj3dI0SBv1vjJahrKIC_urG9y01Zs 7024
gene_normalizer-0.4.1.dist-info/WHEEL sha256=-oYQCr74JF3a37z2nRlQays_SX2MqOANoqVjBBAP2yE 91
gene_normalizer-0.4.1.dist-info/entry_points.txt sha256=PIfv9uayPR3JDDOj75uB2ujZb8ZqhcWZ95cHnZBlodQ 200
gene_normalizer-0.4.1.dist-info/top_level.txt sha256=Elv6f5gXUJHX9xyTxOEayOhcegKi_sRtN4P0F2wd57w 5
gene_normalizer-0.4.1.dist-info/RECORD — —

top_level.txt

gene

entry_points.txt

[console_scripts]
gene_norm_check_db = gene.cli:check_db
gene_norm_dump = gene.cli:dump_database
gene_norm_update = gene.cli:update_normalizer_db
gene_norm_update_remote = gene.cli:update_from_remote