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gemsembler

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0.9.0 gemsembler-0.9.0-py3-none-any.whl

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Project: gemsembler
Version: 0.9.0
Filename: gemsembler-0.9.0-py3-none-any.whl
Download: [link]
Size: 3106816
MD5: c43bc7647b0cf05e81a68a6522b5d75a
SHA256: 3142ef429eb66836b30538f8711b5b5a9cf2571bb3be660a5a278e381165bb16
Uploaded: 2025-01-27 09:53:31 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.2
Name: gemsembler
Version: 0.9.0
Summary: A tool for assembling and comparing several types of Genome-Scale Metabolic Models.
Author-Email: Elena Matveishina <elena.matveishina[at]embl.de>, Bartosz Bartmanski <bartosz.bartmanski[at]embl.de>
Project-Url: Homepage, https://git.embl.de/grp-zimmermann-kogadeeva/GEMsembler
Project-Url: Bug tracker, https://git.embl.de/grp-zimmermann-kogadeeva/GEMsembler/issues
License: MIT License Copyright (c) 2024 Zimmermann-Kogadeeva Group Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Keywords: genome scale metabolic models,metabolism,biology
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.9
Requires-Dist: cobra
Requires-Dist: metquest
Requires-Dist: dill
Requires-Dist: ncbi-genome-download
Requires-Dist: numpy
Requires-Dist: scipy
Requires-Dist: networkx
Requires-Dist: pandas (>=2.0)
Requires-Dist: pyarrow
Requires-Dist: seaborn
Requires-Dist: pyvis
Requires-Dist: h5py
Requires-Dist: platformdirs
Requires-Dist: pyyaml
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 3104 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.8.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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gemsembler/__main__.py sha256=Wz6nUY-tXk-T0zwEvKkAkYVZhTu4hCSftD24ZyxuNaM 896
gemsembler/anticreation.py sha256=ufwIsq0HQq8jPeDg8iLOnsQs2GcjLLS51myYyvHU_rg 10293
gemsembler/comparison.py sha256=oGj0uD7N1j3Ed4p12447_sdsV2zjIdCK8Z2mhQay3L0 19906
gemsembler/conversion.py sha256=1-mCGvE6WOSaZs5ZqvHSO9eS-DPDbCOVxYrbzTXbNx0 15049
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gemsembler/curation.py sha256=N795U8N-H-sT52MWxdq20KkNvgL9rmjINKk950zkjbM 4300
gemsembler/dbs.py sha256=AMti7_kovAhqidPxcXp6dIMovs5i3OPtKzfe3g0nJ1U 10388
gemsembler/downstream.py sha256=CmZXV2V1BO2vghBs48e-izf_bZR0x2R8Oo0_KxAEKBg 50296
gemsembler/drawing.py sha256=jye3LGpwuASgNVYSoPB8vRDbfHUKib-jdBnVr-8ud4c 25681
gemsembler/gathering.py sha256=dB7M1VGi2r06ya3AeX3M_-WjGjxNkkoewfrNTIrJUCk 26005
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gemsembler/genes.py sha256=1IaaN7fPDlCJc9XE_CqQNaMpYkgyhwZ0If5IJ1ZliSA 13734
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gemsembler/data/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
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gemsembler/data/LP/LP_WCFS1_agora.xml.gz sha256=qhzpCXn6BDsQKu7Diq5vEIr43yn38vumnA13Gp_Qtjw 151435
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gemsembler/data/LP/LP_protein_fasta.faa.gz sha256=CqwnkiuvbFDiXXCR2G86vC14HDgFrfDhgqQgzvBCvcE 547669
gemsembler/data/LP/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
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gemsembler-0.9.0.dist-info/RECORD — —

top_level.txt

gemsembler

entry_points.txt

[console_scripts]
gemsembler = gemsembler.__main__:main