Reverse Dependencies of fair-esm

The following projects have a declared dependency on fair-esm:

• alphafold3-pytorch — Alphafold 3 - Pytorch
• alphafold3-pytorch-lightning-hydra — AlphaFold 3 - Pytorch
• berteome — A library to analyze and explore protein sequences using BERT models
• bio-embeddings — A pipeline for protein embedding generation and visualization
• bio-transformers — Wrapper on top of ESM/Protbert model in order to easily work with protein embedding
• conplex-dti — Adapting protein language models and contrastive learning for DTI prediction.
• DeepSecE — A Deep Learning Framework for Multi-class Secreted Effector Prediction in Gram-negative Bacteria.
• DeepTranSyT — Transporters annotation using LLM's
• evodiff — Python package for generation of protein sequences and evolutionary alignments via discrete diffusion models
• fennet — Fennet
• geodock — no summary
• kolossus — Predict kinase-substrate interactions.
• kolossus-test — Predict kinase-substrate interactions. TEST VERSION!!! JUNK OUTPUT!!!
• lbster — Language models for Biological Sequence Transformation and Evolutionary Representation.
• NeuroPredPLM — an interpretable and robust model for neuropeptide prediction by protein language model
• pairk — motif conservation in IDRs through pairwise k-mer alignment
• PerturbNet — PerturbNet
• plants-sm — PlantsSM
• pMTnet-Omni-Document — Document for pMTnet Omni
• protein-sequence-annotation — Protein sequence annotation with language models
• proteinflow — Versatile pipeline for processing protein structure data for deep learning applications.
• proteinworkshop — no summary
• proteusAI — ProteusAI is a python package designed for AI driven protein engineering.
• pyprost — PRotein Ortholog Search Tool
• python-katlas — tools for predicting kinome specificities
• raygun — Protein Redesign using Raygun
• scprint — scPRINT is a Large Cell Model for Gene Network Inference, Denoising and more from scRNAseq data
• senseppi — SENSE-PPI: Sequence-based EvolutioNary ScalE Protein-Protein Interaction prediction
• tf-bind-transformer — Transformer for Transcription Factor Binding
• torchdrug — A powerful and flexible machine learning platform for drug discovery
• transmep — Transfer learning for Mutation Effect Prediction