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exodeepfinder

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0.3.14 exodeepfinder-0.3.14-py3-none-any.whl

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Project: exodeepfinder
Version: 0.3.14
Filename: exodeepfinder-0.3.14-py3-none-any.whl
Download: [link]
Size: 76132
MD5: 19c66a7bd391507ddcca0f63be628b76
SHA256: 6ed50fab8cb1fc98bd09f116510a524b7262e21e2e628bda443e8038fd77af95
Uploaded: 2024-10-28 16:20:55 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: exodeepfinder
Version: 0.3.14
Summary: ExoDeepFinder is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.
Author: E. Moebel
Author-Email: emmanuel.moebel[at]gmail.com
Maintainer: A. Masson
Maintainer-Email: arthur.masson[at]inria.fr
License: GPL-3.0
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Visualization
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
Classifier: Topic :: Scientific/Engineering :: Image Processing
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Operating System :: OS Independent
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Requires-Python: >=3.9
Requires-Dist: numpy (==1.26.4)
Requires-Dist: lxml (==4.9.3)
Requires-Dist: mrcfile (==1.4.3)
Requires-Dist: scikit-learn (==1.3.2)
Requires-Dist: scikit-image (==0.22.0)
Requires-Dist: matplotlib (==3.8.1)
Requires-Dist: openpyxl (==3.1.2)
Requires-Dist: pycm (==4.0)
Requires-Dist: SimpleITK (==2.3.1)
Requires-Dist: tensorflow (==2.16.1); platform_system == "Darwin"
Requires-Dist: tensorflow[and-cuda] (==2.11.1); platform_system == "Linux"
Requires-Dist: tensorflow (==2.11.1); platform_system == "Windows"
Requires-Dist: PyQt5 (==5.15.10); extra == "gui"
Requires-Dist: pyqtgraph (==0.13.3); extra == "gui"
Requires-Dist: Gooey (==1.0.8.1); extra == "gui"
Provides-Extra: gui
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 31884 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.2.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
deepfinder/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
deepfinder/inference.py sha256=6wiOJudAQSQ2mJ5Nz8Y25GopiN122Ds3Ed6u2BGndDI 11474
deepfinder/losses.py sha256=OKoQLoRoeUZTV-zE-VcNJyd7zbuH2Y2s5_Nx9wxCTo4 2020
deepfinder/models.py sha256=FkHN-XBjQtr6LaMs2rdFIHh6T3R21cqkhRPOjE4Ulvk 2295
deepfinder/training.py sha256=KWBS6LEKBYyFx9a4KQycqPbtOPw5P8q74kSqTZ_zJNo 25207
deepfinder/commands/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
deepfinder/commands/convert_tiff_to_h5.py sha256=dupsklcPLcuWiTlPCSNYzj-NE3qQhtXih_Kx-Aq4KBU 4590
deepfinder/commands/detect_spots.py sha256=8tMfligYBtZ0BAW2AHzTJZuwU4oEyMrhKWgAECHGLCo 2856
deepfinder/commands/detect_spots_with_atlas.py sha256=JKE196XwfIkTbhXHfm5sGhR5LrFlvYbJEvAYv--IZL8 3944
deepfinder/commands/exodeepfinder.py sha256=A5hfQ16JlA-FrBzxEXh6HOqKpnI8nnIm7UNIC64V58Q 5272
deepfinder/commands/generate_annotation.py sha256=5_CsjB6_v3bDYdqa4UEEBh8RkrBfSsE1EWTStx0xhh8 4757
deepfinder/commands/generate_segmentation.py sha256=Wv-YqttT55T5MZSLQ1t3sU4SfkW-YFlTDmCZ0vvVsI4 6142
deepfinder/commands/merge_detector_expert.py sha256=q0N7FG17WWkQZdHAjj22PwygTRu6eYIxYDFVjmOlbcc 12489
deepfinder/commands/segment.py sha256=DwSfPcGy0HB08eHeoFTOlryUNUW0jwV7_6_98vkmUGU 4143
deepfinder/commands/structure_training_dataset.py sha256=uplxfv8Q9YkW9DpGNP7PG3mmOjbJ-WwdLDWxFiGK8pE 4750
deepfinder/commands/train.py sha256=5pDRA4bGZvXoLX8bfyb5nEZSzvYxRWspNAqLm_N-SUA 5040
deepfinder/commands/utils.py sha256=Oa9J-vfGNE09E7PAwTMxCXG5bXQ3dIxehIq7Nj7xiHg 2567
deepfinder/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
deepfinder/utils/common.py sha256=gdXRMIH6dxK_3F_65JTEXqzrgIq5Z2kSWZHXaMGMg0A 14737
deepfinder/utils/core.py sha256=rF-kPjU2iAz5xF8DxBgVIm3Y_cykHtcBHCC50IckoW4 11748
deepfinder/utils/dataloader.py sha256=e-yYOvVsspCP59ax7oLulOzVkPRO0bT6uHjEp7gyErk 2154
deepfinder/utils/eval.py sha256=0a-aF0nmLCGXvcvnCBqfiRowtRx-1hJVKzdNHcYSG1E 10751
deepfinder/utils/objl.py sha256=6k7TGJAk0FjrdGcF5kq3boFVm1uiaHiKryIW4FfA-Ec 15378
deepfinder/utils/params.py sha256=rd_Mpa7QuLrL4tdhc9K-WcExo94tTSE6Uw2hf4u2Qck 11188
deepfinder/utils/smap.py sha256=uZ-h9tkhdOHPTMIYhAvNzCR9H8Fy8AWIh16J-yVBwBc 2710
exodeepfinder-0.3.14.dist-info/LICENSE sha256=ixuiBLtpoK3iv89l7ylKkg9rs2GzF9ukPH7ynZYzK5s 35148
exodeepfinder-0.3.14.dist-info/METADATA sha256=lSN1xJEzTJJXlGuWEHMne61SDCBSmsbuugXh9NIGEGo 34763
exodeepfinder-0.3.14.dist-info/WHEEL sha256=OVMc5UfuAQiSplgO0_WdW7vXVGAt9Hdd6qtN4HotdyA 91
exodeepfinder-0.3.14.dist-info/entry_points.txt sha256=YWoOsIQ4SG7TQE2UmpJr8xq--VkvcaLgM8yhZtNJjEE 674
exodeepfinder-0.3.14.dist-info/top_level.txt sha256=SuRoqBblMoMZye4rfmOhMLtRi0bJn5PFc0qc-ElSpb4 11
exodeepfinder-0.3.14.dist-info/RECORD — —

top_level.txt

deepfinder

entry_points.txt

[console_scripts]
edf_convert_tiff_to_h5 = deepfinder.commands.convert_tiff_to_h5:main
edf_detect_spots = deepfinder.commands.detect_spots:main
edf_detect_spots_with_atlas = deepfinder.commands.detect_spots_with_atlas:main
edf_generate_annotation = deepfinder.commands.generate_annotation:main
edf_generate_segmentation = deepfinder.commands.generate_segmentation:main
edf_merge_detector_expert = deepfinder.commands.merge_detector_expert:main
edf_segment = deepfinder.commands.segment:main
edf_structure_training_dataset = deepfinder.commands.structure_training_dataset:main
edf_train = deepfinder.commands.train:main
exodeepfinder = deepfinder.commands.exodeepfinder:main