eugene-tools

View on PyPIReverse Dependencies (0)

0.1.2 eugene_tools-0.1.2-py3-none-any.whl

Wheel Details

Project: eugene-tools
Version: 0.1.2
Filename: eugene_tools-0.1.2-py3-none-any.whl
Download: [link]
Size: 106972
MD5: 822de6bc23d16e022dfc8d34a6a20fe4
SHA256: a0fd8daf2b0af3745596ab292e9907086001bded0aeb1f6b821ed1dc489f0f0c
Uploaded: 2023-07-20 20:01:06 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: eugene-tools
Version: 0.1.2
Summary: Elucidating the Utility of Genomic Elements with Neural Nets
Author: adamklie
Author-Email: aklie[at]ucsd.edu
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Requires-Python: >=3.9,<3.11
Requires-Dist: Sphinx[docs] (<7.0.0,>=6.2.1); extra == "docs"
Requires-Dist: dask_ml (==2023.3.24)
Requires-Dist: einops (==0.6.1)
Requires-Dist: graph-part (<0.2.0,>=0.1.2)
Requires-Dist: matplotlib (<4.0.0,>=3.6.2)
Requires-Dist: motifdata (<0.2.0,>=0.1.0)
Requires-Dist: myst-parser[docs] (<3.0.0,>=2.0.0); extra == "docs"
Requires-Dist: nbsphinx[docs] (<0.10.0,>=0.9.2); extra == "docs"
Requires-Dist: pandoc[docs] (<3.0,>=2.3); extra == "docs"
Requires-Dist: pytorch-lightning (<3.0.0,>=2.0.0)
Requires-Dist: scikit-learn (==1.2.0)
Requires-Dist: seaborn (<0.13.0,>=0.12.0)
Requires-Dist: seqdata (<0.2.0,>=0.1.1)
Requires-Dist: seqdatasets (<0.2.0,>=0.1.0)
Requires-Dist: seqexplainer (<0.2.0,>=0.1.0)
Requires-Dist: seqpro (<0.2.0,>=0.1.1)
Requires-Dist: sphinx-autobuild[docs] (==2021.3.14); extra == "docs"
Requires-Dist: sphinx-autodoc-typehints[docs] (<2.0.0,>=1.21.1); extra == "docs"
Requires-Dist: sphinx-rtd-theme[docs] (<2.0.0,>=1.2.2); extra == "docs"
Requires-Dist: sphinxcontrib-apidoc[docs] (<0.4.0,>=0.3.0); extra == "docs"
Requires-Dist: tensorboard (==2.11.2)
Requires-Dist: torch (>=1.12.0)
Requires-Dist: torchinfo (==1.8.0)
Provides-Extra: docs
Description-Content-Type: text/markdown
[Description omitted; length: 1062 characters]

WHEEL

Wheel-Version: 1.0
Generator: poetry-core 1.6.1
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
eugene/__init__.py sha256=TbVe5pKJO9NBXmCGzZZlhGbHs6rI6gjmT2XZ_totxyY 584
eugene/_settings.py sha256=gqPOSbZRVBtmymPMFDWUMZzsG5XUo9H-K57NK3W89Ys 6279
eugene/conftest.py sha256=ZosRfDaVtI6nfkstnqyvCdc35s3rbifp92fNCA3leSg 1455
eugene/dataload/__init__.py sha256=WmAxH4vVtvRMoJoiPYplgw1fDmVI6acI_JDwh_Ryy0A 73
eugene/dataload/_augment.py sha256=71nHv4iOHbJbneddcuSUynbxgxNlCj3kPdOgJnjyAYY 2709
eugene/dataload/_utils.py sha256=vCVfCbR_8_OrgVJlWX4Db9ZPopDjJVgv1meU6KZkmbQ 2263
eugene/evaluate/__init__.py sha256=LsD7QLRlwepGrOfjkq4f1uAvuzq5F8pRHArORkfxBpI 258
eugene/evaluate/_evaluate.py sha256=JCmcAhfY1f6EQTfFhbWkL4r-Qz980-U8FS8g7W-ytWw 1179
eugene/evaluate/_predict.py sha256=b3HkdTlEmLkgfyhNlTrgVXmBVO6zdGuiB1iaE7a-mAE 13118
eugene/evaluate/_utils.py sha256=3XBUzme26DOI_tcJsKsVkHWbWCHR5YEFeS4YnH9raig 991
eugene/evaluate/metrics/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
eugene/evaluate/metrics/_binary_classification.py sha256=Y4pSrpYkx3NnuTzLzb2ogEZp1F7qm-6oO2LCRcD4ou4 2741
eugene/evaluate/metrics/_multiclass_classification.py sha256=SjDAnGO1kAZksXRtYDF78inhMqDqkFBrDKwxB-tHP2k 541
eugene/evaluate/metrics/_profile_prediction.py sha256=UzE5wpQT0YosuMAvqnZ8i7Jrjza31ye-pkiDd7xOlSU 13629
eugene/evaluate/metrics/_regression.py sha256=v-Wviy6Yr_IOuq12s_R408kAu7fvv9nS-vBkgdkEW2I 745
eugene/experimental/_AdverserialModule.py sha256=uMDGGJYcwujGPxSdFEE9FlLmasLQN8a2_9rAuCzNwlE 3049
eugene/experimental/_AugmentModule.py sha256=7_OQVY8wgk1mPPQT3LiEiu3hSJRk8ITYZXGuCEa_yDg 8244
eugene/experimental/_GenerativeModule.py sha256=QcLQP_jJMR0buc1M6omBg3Ss52bdN0QbUn7rEwHpSvo 7013
eugene/experimental/_LanguageModule.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
eugene/experimental/_hyperopt_wandb.py sha256=3Ls59RNeV3WGRPSytu4qE1VwZsc4jGGXuGN1ey4RCcY 1204
eugene/experimental/_language_models.py sha256=EPtnNx7LjH5E8HMTizHGQYBW9KC58FxYmcaGWq4GAzo 7154
eugene/experimental/_preprocess.py sha256=bQGFfrMhJD1SitUty3BXZiEmbCXbjXLZV65xV3-nvxU 1905
eugene/interpret/__init__.py sha256=qDxcAPJVi8g272olf91aR-116pPc2e5hmGG7TyGzvv4 218
eugene/interpret/_attribute.py sha256=N31ENn0b_46dmL9C8Dt9XaxQ3-4KDuTsWG5n40s3FVQ 4089
eugene/interpret/_filters.py sha256=c9yUYeo2qL6TCSULtB-Btca73YTTMLUOa8a4foNpSII 8720
eugene/interpret/_generative.py sha256=qeO6Jo2NF7jQNqv5rfoM_g-DxfX5KVP6lmc0AvqCMHc 3703
eugene/interpret/_gia.py sha256=UYh-7YiN3hIM7wOewTulqsAyFGedjWIwQn1oF8FUWaM 6549
eugene/models/_ProfileModule.py sha256=N-plKK9KIzdVFHqtOiAtwGv4K9w9fPzs33npZ0KhzY4 10508
eugene/models/_SequenceModule.py sha256=GcwR4PUr5lwnFKGolMLqAAqHzqHC91JTkkbt9Zy3UYc 14478
eugene/models/__init__.py sha256=rfwl7zV9Wy2JTrLcJKgnlJs_0cvLZf0yrymu5oELDjw 346
eugene/models/_utils.py sha256=l_Ww-8KDiwFuI_RnPYNr9cahujPnX86El6GqgwDKtq4 2043
eugene/models/base/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
eugene/models/base/_blocks.py sha256=Jgt1jYAScbjI04eAazC3LxtfH-uSmp4Go4WTJNZ3GEY 8986
eugene/models/base/_initializers.py sha256=kBwp50FxMKnf51pQunBXw7uldaIzupzlXd4DkkZW9uU 5621
eugene/models/base/_layers.py sha256=nzbpgsfdPu74iiNrx_3BKpnkJH2eHGAJFiU1We9vJK0 11661
eugene/models/base/_losses.py sha256=sThbyF4MuuPULHMloOTSlgAuft_i2PChg4SvjcXTWFM 3654
eugene/models/base/_metrics.py sha256=BQdWldsgZvNYGxp6HrqCFTlYTcId3JLnU-8wMeEDflk 1827
eugene/models/base/_module.py sha256=FJtvRbcRhNqR7duUirPTynY6zwSHUMn1i_P72bdsf3c 10447
eugene/models/base/_optimizers.py sha256=iAKJ5_pobJ8D8CXxdb5kB8ObSWJTFe_OF8rMh9EBKtM 83
eugene/models/base/_regularizers.py sha256=--mgH3WOFUnbdwQzM2XsuuB6Z56z6kY-6UkOrJDWunU 3311
eugene/models/base/_schedulers.py sha256=fPsnVOcE843paUdZsdum37i4_PW-opCVSt5G617pu88 121
eugene/models/base/_towers.py sha256=3n5nNh6j8W4gqyKbz4uZigssxg-di072Uo0RFSHVXdg 12485
eugene/models/base/_utils.py sha256=LjpVMB4jhWC7o1T7LW0fYXRzMLrVdjZT26GkGrk_clU 1731
eugene/models/zoo/__init__.py sha256=yTFRVcKRYvX1q_RLDsa9nPLRJ431q8Pynru3yDylR_U 347
eugene/models/zoo/_basic_models.py sha256=VYp1R664I1jJtOrhMkwyMgUdDU67S2tELHZ4nVYa2I0 27146
eugene/models/zoo/_cre_activity_predictors.py sha256=gb8Es-LjrEwQQj4lHTpwWB6y57FCw01AxSlAyycYnbU 5615
eugene/models/zoo/_profile_predictors.py sha256=neXuR2ZDyGen4oZpHDGqmbQDpJJpwiablWOmeRFJjN0 6596
eugene/models/zoo/_regulatory_classifiers.py sha256=zASq2_3swUQGW7RjYPPyjJwdRggoO0M9dmC1aW8WP7Y 18311
eugene/models/zoo/_single_cell_predictors.py sha256=Vb5pv0HofOTSdt0D6j90ZCAOfBJr_7xXrNvUFemKECM 3291
eugene/models/zoo/_tf_binding_predictors.py sha256=PL0Rkchhx1G2o4P74ipqfnVsep_OXaHUtsA0qSh4NGM 13955
eugene/plot/__init__.py sha256=81Yp5JFFl-XqW0VB0f-GH1L6YRHuwTnUE5sBJk8K4Q4 483
eugene/plot/_catplot.py sha256=wVHRqy7TR8wKipK2yCih_wgGjJGjW7EdTngtEPbMXyk 7410
eugene/plot/_classification.py sha256=puHZ-fjZaRtXz3RPsq8j7OOmB5qtcISiWARTU91p9_Q 8227
eugene/plot/_experimental.py sha256=Z7hbim2MLVK0JcjW8cIeW9Z-PboHcBSGe1qjiPssGS8 3545
eugene/plot/_gia.py sha256=tcFo8vSaUGEF5zPl96gPOg0mLYl_mxgFxfYmCwIk8wU 4458
eugene/plot/_regression.py sha256=4JE_JuBdS4yzlwIEAbdNueIS7Oj8q_q3RBZsjoetVzg 6317
eugene/plot/_seq.py sha256=ue-oZwljBX83zBG1JyD1kwizzGQZH4sbpYe9alwlMXg 21089
eugene/plot/_summary.py sha256=tmoJh-j1isgD06jMHc2RP-z-8Y6cks_AmWe4CpuFoHk 11244
eugene/plot/_training.py sha256=pUkXYg5MM2B5S-wu4dh1KERfQyLy_WXOokU150flJUE 4835
eugene/plot/_utils.py sha256=tWBz3TpyyCg97aD1MOTPhXd8KiG8KQkPPtM_4Z4pfes 9721
eugene/preprocess/__init__.py sha256=JmKt_2lc9vzIFwsx_v4YXrvrA5iKHYSeGGsk4w89NlU 231
eugene/preprocess/_seqdata.py sha256=Au7lxpQK7smVJCxzUwXoje6KlOuKnhvkWsgYF5Mc75A 12762
eugene/preprocess/_utils.py sha256=3qWewlmbo3K9a4YgI7AR9FiPNSBOQxZwt5u5nqXAX2A 850
eugene/train/__init__.py sha256=14b8CZotogW1bo-XcytVzIWHIVo8tRBh7W0biqiE-hw 322
eugene/train/_fit.py sha256=zMXY4cl05nNSiSEQARK1HXthlLuTAZ0Tjn0yr443ryA 10310
eugene/train/_hyperopt.py sha256=fyoNTG8DiwGfQ6zPCyLZXXbIfxnRMuzcfe6nDhTkSSE 13397
eugene/utils/__init__.py sha256=hlIzI0uvAO7AGSv7TtHAghzWL4ugKROxOKC8uyBCNkg 30
eugene/utils/_utils.py sha256=bwqQOibPxU33nIHc5B7J3phXE1z_sEFF6Rhwpd7RBxU 723
eugene_tools-0.1.2.dist-info/LICENSE sha256=z5XWvwXXC_aTflUl89euT75S2XqFSA1bky7gwJfW4aw 1066
eugene_tools-0.1.2.dist-info/METADATA sha256=FTbddX64Xf0DYJlG40p4gzXVg7VZqBwC35UKT5myHxA 2632
eugene_tools-0.1.2.dist-info/WHEEL sha256=Zb28QaM1gQi8f4VCBhsUklF61CTlNYfs9YAZn-TOGFk 88
eugene_tools-0.1.2.dist-info/RECORD