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1.6.0 ensembl_genomio-1.6.0-py3-none-any.whl

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Project: ensembl-genomio
Version: 1.6.0
Filename: ensembl_genomio-1.6.0-py3-none-any.whl
Download: [link]
Size: 412150
MD5: 34f457b71fd6d72e1da7b9359f0d6ef1
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Uploaded: 2024-12-19 15:09:15 +0000

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METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: ensembl-genomio
Version: 1.6.0
Summary: Ensembl GenomIO -- pipelines to convert basic genomic data into Ensembl cores and back to flatfile
Author-Email: Ensembl <dev[at]ensembl.org>
Project-Url: homepage, https://www.ensembl.org
Project-Url: repository, https://github.com/Ensembl/ensembl-genomio
Project-Url: documentation, https://ensembl.github.io/ensembl-genomio
License: Apache License 2.0
Keywords: genome_io,ensembl,bioinformatics,annotation,setup
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Requires-Python: >=3.10
Requires-Dist: bcbio-gff (==0.7.1)
Requires-Dist: biopython (>=1.81)
Requires-Dist: ensembl-py (>=2.1.2)
Requires-Dist: ensembl-utils (>=0.5.1)
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Requires-Dist: build; extra == "build"
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Requires-Dist: ensembl-utils[mysql]; extra == "mysql"
Provides-Extra: build
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Provides-Extra: docs
Provides-Extra: mysql
Description-Content-Type: text/markdown
License-File: LICENSE
License-File: NOTICE
[Description omitted; length: 7526 characters]

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ensembl_genomio-1.6.0.dist-info/RECORD — —

top_level.txt

ensembl
tests

entry_points.txt

[console_scripts]
annotation_update_description = ensembl.io.genomio.annotation.update_description:main
assembly_download = ensembl.io.genomio.assembly.download:main
assembly_tracker = ensembl.io.genomio.assembly.status:main
database_factory = ensembl.io.genomio.database.factory:main
events_dump = ensembl.io.genomio.events.dump:main
events_format = ensembl.io.genomio.events.format:main
events_load = ensembl.io.genomio.events.load:main
fasta_chunk = ensembl.io.genomio.fasta.chunk:main
fasta_process = ensembl.io.genomio.fasta.process:main
genbank_download = ensembl.io.genomio.genbank.download:main
genbank_extract_data = ensembl.io.genomio.genbank.extract_data:main
genome_metadata_dump = ensembl.io.genomio.genome_metadata.dump:main
genome_metadata_extend = ensembl.io.genomio.genome_metadata.extend:main
genome_metadata_prepare = ensembl.io.genomio.genome_metadata.prepare:main
genome_stats_compare = ensembl.io.genomio.genome_stats.compare:main
genome_stats_dump = ensembl.io.genomio.genome_stats.dump:main
gff3_overlaps = ensembl.io.genomio.gff3.overlaps:main
gff3_process = ensembl.io.genomio.gff3.process:main
manifest_check_integrity = ensembl.io.genomio.manifest.check_integrity:main
manifest_compute_stats = ensembl.io.genomio.manifest.compute_stats:main
manifest_generate = ensembl.io.genomio.manifest.generate:main
query_db_meta = ensembl.io.genomio.database.meta_getter:main
schemas_json_factory = ensembl.io.genomio.schemas.json.factory:main
schemas_json_validate = ensembl.io.genomio.schemas.json.validate:main
seq_region_dump = ensembl.io.genomio.seq_region.dump:main
seq_region_prepare = ensembl.io.genomio.seq_region.prepare:main
seq_region_rename = ensembl.io.genomio.seq_region.rename:main